Public informatics resources for rice and other grasses

Plant Molecular Biology

Volumn 35, Issue 1-2, 1997, Pages 241-251

  Cartinhour, Samuel W ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Comparative mapping; Genome Database; Grass genetics; Informatics

Indexed keywords

POACEAE; TRITICUM AESTIVUM; ZEA MAYS;

EID: 0031238705     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/978-94-011-5794-0_23     Document Type: Article

References (71)

1. Report of the Invitational DOE Workshop on Genome Informatics, 26-27 April 1993. http://www.gdb.org/Dan/DOE/whitepaper/contents.html
2. The C. elegans Genome Project. http/www.sanger.ac.uk/~sjj/C.elegans_ Home.html
3. SGD, the Saccharomyces Genome Database. http://genome-www.stanford.edu/Saccharomyces/
4. About RiceGenes. http://probe.nalusda.gov:8000/plant/aboutricegenes.html
5. Rice Genome Research Program. http://www.staff/or.jp/
6. National Agricultural Science and Technology Institute. http://sun20.asti.re.kr/astiacedb.html
7. GenBank Overview. http://www.ncbi.nlm.nih.gov/Web/Genbank/index.html
8. European Molecular Biology Laboratory. http://www.embl-heidelberg.de/
9. DNA Data Bank of Japan. http://www.ddbj.nig.ac.jp/
10. The National Plant Germplasm System. http://www.ars-grin-gov/npgs/
11. Moore G, Devos KM, Wang Z, Gale MD: Grasses, line up and form a circle. Current Biology 5: 737-739 (1995).
12. The Maize Genome Database Project. http://www.agron.missouri.edu/more_info.html
13. About SorghumDB. http://probe.nalusda.gov:8000/plant/aboutsorghumdb.html
14. GrainGenes, a database for small grains and sugarcane. http://wheat.pw.usda.gov/graingenes.html
15. About MilletGenes. http://probe.nalusda.gov:8000/plant/aboutmilletgenes.html
16. USDA Plant Genome Research Program. In: Advances in Agronomy, pp. 113-166, Academic Press, New York (1995).
17. -). A.C. elegans Database. Documentation, code and data available from anonymous FTP servers at lirmm.lirmm.fr, cele.mrclmb.cam.ac.uk and ncbi.nlm.nih.gov.
18. Available via anonymous ftp at probe.nalusda.gov in /pub/ricegenes.
19. The RiceGenes Gopher is at gopher://nightshade.cit.cornell.edu:70/
20. The RiceGenes WWW interface is at http://probe.nalusda.gov: 8300/cgi-bin/browse/ricegenes
21. The Agricultural Genome Information Server. http://probe.nalusda.gov: 8000/
22. The National Agricultural Library. http://www.nalusda.gov/
23. Plant Genome Databases. http://probe.nalusda.gov:8300/plant/index.html
24. World Wide Web Consortium. http://www.w3.org/pub/WWW/TheProject.html This site contains many of the primary references for the WWW concept and its underlying technology.
25. RiceDB. http://www.dna.affrc.go.jp/htdocs/rgp_map/index.html
26. Rice physical mapping data from RGP. http://www.staff.or.jp/rgp/publicdata/naturegenetics/rgpdata.html Included are contigs for chromosome 6.
27. Genotype data for RI lines (Asominori X RI24). http://www.staff.or.jp/rgp/publicdata/asoir24/readme.html
28. Order forms for materials from MAFF DNA bank. http://www.staff.or.jp/rgp/orderforms.html
29. RiceGenes Mirror WWW Server at NASTI, RDA, Korea. http://sun20.asti.re.kr/cgi-bin/nph-ricegene/acedb/ricegenes?c
30. RiceMac. http://168.126.188.6/Ricemac4.html
31. The Korea Rice Genome Database. http://168.126.188.6/ricemac.html
32. RICE GENOME: newsletter of RGP. http://www.staff.or.jp/rgp/ricegenomenewslets.html
33. Newsletters and Reports. http://probe.nalusda.gov:8000/otherdocs/newsltr.html
34. Plant Genome Meeting Abstracts. http://probe.nalusda.gov:8000/otherdocs/pg/index. html
35. News and abstracts of the conferences related to Rice Research. http://168.126.188.6/riceconference.html
36. IRRI: International Rice Research Institute. http://www.cgiar.org/irri/
37. The NCBI WWW Entrez Browser. http://www3.ncbi.nlm.nih.gov/Entrez/ Users should follow the link to 'search the genomes database' and use the query string 'Oryza sativa' to retrieve the maps.
38. Databases at the John Innes Centre. http://jiio5.jic.bbsrc.ac.uk:8000/index.html
39. Kurata N, Nagamura Y, Yamamoto K, Harushima Y, Sue N, Wu J, Antonio BA, Shomura A, Shimizu T, Lin SY, Inoue T, Fukuda A, Shimano T, Kuboki Y, Toyama T, Miyamoto Y, Krihara T, Hayasaka K, Miyao A, Monna L, Zhong HS, Tamura Y, Wang ZX, Momma T, Umehara Y, Yano M, Sasaki T, Minobe Y: A 300 kilobase Interval Genetic Map of Rice Including 883 Expressed Sequences. Nature Genet 8: 365-372 (1994).
40. Martin W, Gierl A, Seadler H: Molecular evidence for precretaceous angiosperms origins. Nature 339: 46-48 (1989).
41. Moore G, Foote T, Helentjaris T, Devos K, Kurata N, Gale M: Was there a single ancestral cereal chromosome? Trends Genet 11: 81-82 (1995).
42. Moore G, Gale MD, Kurata N, Flavell RB: Molecular analysis of small grain cereal genomes: current status and prospects. Bio/technology 11: 584-589 (1993).
43. Ahn S, Tanksley SD: Comparative linkage maps of the rice and maize genomes. Genetics 90: 7980-7984 (1993).
44. Bennetzen JL, Freeling M: Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends Genet 9: 259-261 (1993).
45. Mammalian Hormology Query Form. http://www.informatics.jax.org/homology.html
46. Causse MA, Fulton TM, Cho YG, Ahn SN, Chunwongse J, Wu K, Xiao J, Yu Z, Ronald PC, Harrington SE, Second G, McCouch SR, Tanksley SD: Saturated Molecular Map of the Rice Genome Based on an Interspecific Backcross Population. Genetics 138: 1251-1274.
47. King RC, Stansfield WD: A Dictionary of Genetics, 4th ed. Oxford University Press, New York (1990).
48. Lin YR, Schertz KF, Paterson AH: Comparative analysis QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghym population. Genetics 141: 391-411 (1995).
49. Devos KM, Atkinson MD, Chinoy CN, Liu C, Gale MD, Liu CJ: RFLP-based genetic map of the homoeologous group 3 chromosomes of wheat and rye. Theor Appl Genet 83: 931-939 (1992).
50. Devos KM, Gale MD: Extended genetic maps of the homoeologous group 3 chromosomes of wheat, rye and barley. Theor Appl Genet 85: 649-652 (1993).
51. Devos KM, Millan T, Gale MD: Comparative RFLP maps of the homoeologous group-2 chromosomes of wheat, rye and barley. Theor Appl Genet 85: 784-792 (1993).
52. Gale MD, Atkinson MD, Chinoy CN, Harcourt RL, Jia J, Li QY, Devos KM: Genetic Maps of Hexaploid Wheat. In: Li ZS, Xin ZY (eds) Proceedings of the 8th International Wheat Genetics Symposium, vol. 1 29-40, China Agricultural Scientech Press (1995).
53. Beckstrom-Sternberg SM, Reardon E, Price C: The Mendel Database' http://probe.nalusda.gov:8300/cgi-bin/browse/mendel.
54. Cartinhour SW, Bigwood DW: Informatics for the Grass Genome Community. Abstracts from Plant Genome III, 1995. gopher://probe.nalusda.gov:7020/0R142719-14973-/pgabs/pg3abs
55. IGGI: The international grass genome initiative. http://www-iggi.bio.purdue.edu/
56. Edwards JH: The Oxford Grid. Ann Hum Genet 55: 17-31 (1991).
57. Java (tm) - Programming for the Internet. http://java.sun.com/java.sun.com/
58. Krol E: The Whole Internet users guide and catalog. O'Reilley & Associates, Cambridge, MA (1994).
59. Liu C, Peek J, Jones R, Buus B, Nye A: Managing Internet Information Services. O'Reilley & Associates, Cambridge, MA (1994).
60. The Arabidopsis thaliana database. http://genome-www.stanford.edu/Arabidopsis/
61. The Arabidopsis Information Management System. http://aims.cps.msu.edu/aims/
62. The Nottingham Arabidopsis Stock Centre. http://nasc.nott.ac.uk/
63. The Electronic Arabidopsis Information Service. http://genome-www.stanford.edu/Arabidopsis/ais/aishint.html
64. Weeds World: the international electronic Arabidopsis newsletter. http://nasc.life.nott.ac.uk:8300/
65. Lehle Seeds, http://www.arabiopsis.com/
66. Updated Arabidopsis maps, revised by Mary Anderson and Mike Arnold, are available at http://nasc.nott.ac.uk/new_ri_map.html
67. Arabidopsis Genetics/Meinke Laboratory. http://mutant.lse.okstate.edu/meinke.html
68. The Arabidopsis thaliana Genome Center (ATGC) at the University of Pennsylvania. http://cbil.humgen.upenn.edu/~atgc/ATGCUP.html
69. Goodman Lab at Massachusetts General Hospital. http://weeds.mgh.harvard.edu/goodman.html
70. American Civil Liberties Union et al. v. Janet Reno, Attorney General of the United States. http://www.eff.org/pub/Censorship/Internet_censorship_bills /HTML/960612-aclu_v_reno_decision.html
71. Netscape Communications Corporation. http://home.netscape.com/