Quantitative assessment of genomic similarity from restriction fragment patterns

Preventive Veterinary Medicine

Volumn 32, Issue 1-2, 1997, Pages 95-110

  Weigel, Ronald M ^a   Scherba, Gail ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Genetic relatedness; Infectious disease; Molecular epidemiology; Quantitative methods; Restriction fragment analysis

Indexed keywords

HERPETOVIRUS; SUID HERPESVIRUS 1;

VIRUS DNA;

ALGORITHM; ANIMAL; COMPARATIVE STUDY; EPIDEMIOLOGY; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; PSEUDORABIES HERPETOVIRUS; RESTRICTION MAPPING; REVIEW; VIRUS GENOME;

ALGORITHMS; ANIMALS; DNA, VIRAL; EPIDEMIOLOGY, MOLECULAR; GENOME, VIRAL; HERPESVIRUS 1, SUID; RESTRICTION MAPPING;

EID: 0031229411     PISSN: 01675877     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-5877(96)01134-8     Document Type: Article

References (28)

1. Anderberg, M.R., 1973. Cluster Analysis for Applications. Academic Press, New York, 359 pp.
2. Aujeszky, A., 1902. Über eine neue Infektionskrankheit bei Haustieren. Zentr. Bakteriol. Parasit. Infectktkr. Hyg., 32: 353-357.
3. Ben-Porat, T., DeMarchi, J.M., Lomniczi, B. and Kaplan, A.S., 1986. Role of glycoproteins of pseudorabies virus in eliciting neutralizing antibodies. Virology, 154: 325-334.
4. Christensen, L.S. and Lomniczi, B., 1993. High frequency intergenomic recombination of suid herpesvirus 1 (SHV-1, Aujeszky's disease virus). Arch. Virol., 132: 37-50.
5. Gabriel, D.W., Kingsley, M.T., Hunter, J.E. and Gottwald, T., 1989. Reinstatement of Xanthomonas citri (ex Hasse) and X. phaseoli (ex Smith) to species and reclassification of all X. campestris pv. citri strains. Int. J. Syst. Bacteriol., 39: 14-22.
6. Green, P.E. and Rao, V.R., 1972. Applied Multidimensional Scaling: a Comparison of Approaches and Algorithms. Holt, Rinehart and Winston, New York, 292 pp.
7. Kaplan, A.S. and Vatter, A.E., 1959. A comparison of herpes simplex and pseudorabies viruses. Virology, 7: 394-407.
8. Kit, S., 1989. Safety and efficacy of genetically engineered Aujeszky's disease vaccines. In: J.T. van Oirschot (Editor), Vaccination and Control of Aujeszky's Disease. Kluwer Academic Publishers, the Netherlands, pp. 45-55.
9. Kit, S., 1990. Genetically engineered vaccines for control of Aujeszky's disease (pseudorabies). Vaccine, 8: 420-424.
10. Kluge, J.P., Niyo, Y., Miller, L.D., Hill. H.T. and Pirtle, E.C., 1986. Comparison of lesions induced by three Aujeszky's disease virus isolates. Proc. 9th Int. Congr. Pig Vet. Soc., p. 338.
11. Kruskal, J.B., 1964. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychometrika, 29: 1-27.
12. Kruskal, J.B. and Wish, M., 1978. Multidimensional Scaling. Sage Publications, Beverly Hills, CA, 93 pp.
13. Lynch, M., 1988. Estimation of relatedness by DNA fingerprinting. Mol. Biol. Evol., 5: 584-599.
14. Marchioli, C.C., Yancey, R.J., Wardley, R.C., Thomsen, D.R. and Post, L.E., 1987. A vaccine strain of pseudorabies virus with deletions in the thymidine kinase and glycoprotein X genes. Am. J. Vet. Res., 48: 1577-1583.
15. ®, an Aujeszky's Disease vaccine with dual (gI and gX) serologic marker deletions. Proc. 12th Int. Congr. Pig Vet. Soc., the Hague, the Netherlands, p. 71.
16. Molitor, T. and Thawley, D., 1987. Pseudorabies vaccines: past, present, and future. Comp. Food Anim. Med., 9: F410-F416.
17. Neter, J., Wasserman, W. and Kutner, M.H., 1985. Applied Linear Statistical Models, 2nd ed., Irwin, Homewood, IL, 1127 pp.
18. Petroviskis, E.A., Timmins, J.G., Gierman, T.M. and Post, L.E., 1986. Deletions in vaccine strains of pseudorabies virus and their effect on synthesis of glycoprotein gl. J. Virol., 60: 1166-1169.
19. Picard, B., Denis, J.-B., Decoux, G. and Goullet, P., 1991. Computer-asssisted statistical analyses of enzyme and ribosomal DNA electrophoretic polymorphism in Yersinia. Electrophoresis, 12: 264-269.
20. Platt, K.B., Mare, C.J. and Hinz, P.N., 1979. Differentiation of vaccine strains and field isolates of pseudorabies (Aujeszky's disease) virus: thermal sensitivity and rabbit virulence markers. Arch. Virol., 60: 13-23.
21. Saunders, J.R., Gustafson, D.P., Olander, H.J. and Jones, R.K., 1963. An unusual outbreak of Aujeszky's disease in swine. Proc. 67th Ann. Meeting US Livestock Sanit. Assoc., pp. 331-346.
22. Scherba, G., Gustafson, D.P., Kanitz, C.L. and Sun, I.L., 1978. Delayed hypersensitivity reaction to pseudorabies virus as a field diagnostic test in swine. J. Am. Vet. Med. Assoc., 173: 1490-1493.
23. Schiffman, S.S., Reynolds, M.L. and Young, F.W., 1981. Introduction to Multidimensional Scaling: Theory, Methods, and Applications. Academic Press, New York, 413 pp.
24. Scheurs, C., Mettenleiter, T.C., Zuckermann, F., Sugg, N. and Ben-Porat, T., 1988. Glycoprotein gC of pseudorabies virus is multifunctional. J. Virol., 62: 2251-2257.
25. Shope, R.E., 1931. An experimental study of "mad itch" with especial reference to its relationship to pseudorabies. J. Exp. Med., 54: 233-248.
26. Skoda, R., Brauner, I., Sadecky, E. et al., 1964. Immunization against Aujeszky's disease with live vaccine. I. Attenuation of virus and some properties of attenuated strains. Acta Virol., 8: 1-9.
27. Tabor, S. and Struhl, K., 1994. Enzymatic manipulation of DNA and RNA. Current Protocols in Molecular Biology. John Wiley and Sons, New York, pp. 3.5.4-7.
28. van Oirschot, J.T., Gielkens, A.L.J., 1987. Vaccines against Aujeszky's disease: comparison of efficacy, DNA fingerprints and antibody response to glycoprotein I. Vet. Q., 9: 37S-49S.