A 1-Mb physical map and PAC contig of the imprinted domain in 11p15.5 that contains TAPA1 and the BWSCR1/WT2 region

Genomics

Volumn 43, Issue 3, 1997, Pages 366-375

  Reid, Laura H ^a   Davies, Chris ^b   Cooper, Paul R ^c   Crider Miller, Shyra J ^a   Sait, Sheila N J ^c   Nowak, Norma J ^c   Evans, Glen ^b   Stanbridge, Eric J ^d   DeJong, Pieter ^b   Shows, Thomas B ^c   Weissman, Bernard E ^a   Higgins, Michael J ^c  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^c ROSWELL PARK CANCER INSTITUTE   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BECKWITH WIEDEMANN SYNDROME; CANCER GROWTH; CANCER INHIBITION; CARCINOGENESIS; CHROMOSOME 11P; CHROMOSOME MAP; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ISOLATION; GENE LOCATION; MOLECULAR CLONING; NEPHROBLASTOMA; PRIORITY JOURNAL; TUMOR SUPPRESSOR GENE;

EID: 0031214796     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.4826     Document Type: Article

References (72)

1. Alders, M., Hodgess, M., Postmus, J., van Wijk, L, Bliek, J., de Meulemeester, J., Westerveld, A., Oudejans, C., Little, P., and Mannens, M. (1997). Human MASH2 maps to chromosome 11p15 close to IGF2 and is expressed in extravillus trophoblast. Hum. Molec. Genet. 6: 859-867.
2. ks cardiac potassium current. Nature 384: 78-80.
3. Boismenu, R., Rhein, M., Fischer, W. H., and Havran, W. L. (1996). A role for CD81 in early T cell development. Science 271: 198-200.
4. Brown, K. W., Villar, A. J., Bickmore, W., Clayton-Smith, J., Catchpoole, D., Maher, E. R., and Reik, W. (1996). Imprinting mutation in the Beckwith-Wiedemann syndrome leads to biallelic IGF2 expression through an H19-independent pathway. Hum. Mol. Genet. 5: 2027-2032.
5. Christian, C. L., Liner, R. I., Abu Bak'r, S., McCallum, W. D., and Conte, W. J. (1993). Genomic imprinting and the Beckwith-Wiedemann syndrome associated with a familial chromosome #11 inversion. Am. J. Hum. Genet. Suppl. 53: 533.
6. Chung, W. Y., Yuan, L., Feng, L., Hensle, T., and Tycko, B. (1996). Chromosome 11p15.5 regional imprinting: Comparative analysis of KIP2 and H19 in human tissues and Wilms' tumors. Hum. Mol. Genet. 5(8): 1101-1108.
7. Church, G. M., and Gilbert, W. (1984). Genomic sequencing. Proc. Natl. Acad Sci. USA 81: 1991-1995.
8. Cruzen, M. E., Bengtsson, U., McMahon, J., Wasmuth, J. J., and Arfin, S. M. (1993). Assignment of the cysteinyl-tRNA synthetase gene (CARS) to 11p15.5. Genomics 15: 692-693.
9. Dittrich, B., Buiting, K., Korn, B., Rickard, S., Buxton, J., Saitoh, S., Nicholls, R., Poustka, A., A., W., Zabel, B., and Horsthemke, B. (1996). Imprint switching on human chromosome 15 may involve alternative transcripts of the SNRPN gene. Nature Genet. 14:163-170.
10. Dong, J.-T., Suzuki, H., S.S., P., Bova, S., Schalken, J. A., Isaacs, W. B., Barrett, J. C., and Isaacs, J. T. (1996). Down-regulation of the KAI1 metastasis suppressor gene during the progression of human prostatic cancer infrequently involves gene mutation or allelic loss. Cancer Res. 56: 4387-4390.
11. Dong, J. T., Lamg, P. W., Rinker-Schaeffer, C. W., Vukanovic, J., Ichikawa, T., Isaacs, J. T., and Barrett, J. C. (1995). KAI1, a metastasis suppressor gene for prostate cancer on human chromosome 11p11.2. Science 268: 884-886.
12. Dowdy, S. F., Fasching, C. L., Scanlon, D. J., Araujo, D., Livanos, E., Lai, K.-M., Weissman, B. E., and Stanbridge, E. J. (1991). Suppression of tumorigenicity in Wilms' tumor by the p14:p15 region of chromosome 11. Science 254: 293-295.
13. Fearon, D. T., and Carter, R. H. (1995). The CD19/CR2/TAPA-1 complex of B lymphocytes: Linking natural to acquired immunity. Annu. Rev. Immunol. 13: 127-149.
14. Feinberg, A. P., and Vogelstein, B. (1983). A technique for radiolabelling DNA fragments to high specific activity. Anal. Biochem. 132: 6-13.
15. Garvin, A. J., Re, G. G., Tarnowski, B. I., Hazen-Martin, D. J., and Sens, D. A. (1993). The G401 cell line, utilized for studies of chromosomal changes in Wilms' tumor, is derived from a rhabdoid tumor of the kidney. Am. J. Pathol. 142(2): 375-380.
16. Giannoukakis, N., Deal, C., Pacquette, J., Goodyer, C., and Polychronakos, C. (1993). Parental genomic imprinting of the human IGF2. Nature Genet. 4: 98-101.
17. Guillemot, F., Caspary, T., Tilghman, S. M., Copeland, N. G., Gilbert, D. J., Jenkins, N. A., Anderson, D. J., Joyner, A. L., Rossant, J., and Nagy, A. (1995). Genomic imprinting of Mash2, a mouse gene required for trophoblast development. Nature 9: 235-242.
18. Guillemot, F., Nagy, A., Auerbach, A., Rossant, J., and Joyner, A. (1994). Essential role of Mash-2 in extraembryonic development. Nature 371: 333-336.
19. Hatada, I., Inazawa, J., Abe, T., Nakayama, M., Kaneko, Y., Jinno, Y., Niikawa, N., Ohashi, H., Fukushima, Y., Iida, K, Yutani, C., Takahashi, S. I., Chiba, Y., Ohishi, S., and Mukai, T. (1996). Genomic imprinting of human p57/KIP2 and its reduced expression in Wilms' tumors. Hum. Mol. Genet. 5(6): 783-788.
20. Higgins, M. J., Smilinich, N. J., Sait, S., Koenig, A., Pongratz, J., Gessler, M., Richard, C. W., III, James, M. R., Sanford, J. P., Kim, B.-W., Cattelane, J., Nowak, N. J., Winterpacht, A., Zabel, B. U., Munroe, D. J., Bric, E., Housman, D. E., Jones, C., Nakamura, Y., Gerhard, D. S., and Shows, T. B. (1994). An ordered NotI fragment map of human chromosome band 11p15. Genomics 23: 211-222.
21. Hoovers, J. M. N., Kalikin, L. M., Johnson, L. A., Alders, M., Redeker, B., Law, D. J., Bliek, J., Steenman, M., Benedict, M., Wiegant, J., Lengauer, C., Taillon-Miller, P., Schlessinger, D., Edwards, M. C., Elledge, S. J., Ivens, A., Westerveld, A., Little, P., Mannens, M., and Feinberg, A. P. (1995). Multiple genetic loci within 11p15 defined by Beckwith-Wiedemann syndrome rearrangement breakpoints and subchromosomal transferable fragments. Proc. Natl. Acad. Sci. USA 92: 12456-12460.
22. Hu, R.-J., Lee, M. P., Johnson, L. A., and Feinberg, A. P. (1996). A novel human homologue of yeast nucleosome assembly protein, 65 kb centromeric to the p57/KIP2 gene is biallelically expressed in fetal and adult tissues. Hum. Mol. Genet. 5(11): 1743-1748.
23. Ioannou, P. A., Amemiya, C. T., Garnes, J., Kroisel, P. M., Shizuya, H., Chen, C., Batzer, M. A., and De Jong, P. J. (1994). A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 6: 84-89.
24. Junien, C. (1992). Beckwith-Wiedemann syndrome, tumorigenesis and imprinting. Curr. Opin. Genet. Dev. 2: 431-438.
25. Karnes, P. S., Tran, T. N., Cui, M. Y., Bogenmann, E., Shimada, H., and Ying, K. L. (1991). Establishment of a rhabdoid tumor cell line with a specific chromosomal abnormality, 46, XY,t(11;22) (p15.5;q11.23). Cancer Genet. Cytogenet. 56: 31-38.
26. Kere, J., Nagaraja, R., Mimm, S., Ciccodicola, A., D'Urso, M., and Schlessinger, D. (1992). Mapping human chromosomes by walking with sequence-tagged sites from end fragments of yeast artificial chromosome inserts. Genomics 14: 241-248.
27. Koi, M., Johnson, L. A., Kalikin, L. M., Little, P. F. R., Nakamura, Y., and Feinberg, A. P. (1993). Tumor cell growth arrest caused by subchromosomal transferable DNA fragments from chromosome 11. Science 260: 361-364.
28. Kondo, M., Matsuoka, S., Uchida, K, Osada, H., Nagatake, M., Takagi, K., Harper, J. W., Takahashi, T., Elledge, S. J., and Takahashi, T. (1996). Selective maternal-allele loss in human lung cancers of the maternally expressed p57/KIP2 gene at 11p15.5. Oncogene 12: 1365-1368.
29. Lee, M. P., Hu, R.-H., Johnson, L. A., and Feinberg, A. P. (1997). Human KVLQT1 gene shows tissue-specific imprinting and encompasses Beckwith-Wiedemann syndrome chromosomal rearrangements. Nature Genet. 15: 181-185.
30. Loh, W. E., Scrable, H. J., Livanos, E., Arboleda, M. J., Cavenee, W. K., Oshimura, M., and Weissman, B. E. (1992). Human chromosome 11 contains two different growth suppressor genes for embryonal rhabdomyosarcoma. Proc. Natl. Acad. Sci. USA 89:1755-1759.
31. Mannens, M., Hoovers, J. M. N., Redeker, E., Verjaal, M., Feinberg, A. P., Little, P., Boavida, M., Goad, N., Steenman, M., Bliek, J., Niikawa, N., Tonoki, H., Nakamura, Y., de Boer, E. G., Slater, R. M., John, R., Cowell, J. K, Junien, C., Henry, I., Tommerup, N., Weksberg, R., Pueschel, S. M., Leschot, N. J., and Westerveld, A. (1994). Parental imprinting of human chromosome region 11p15.3-pter involved in the Beckwith-Wiedemann syndrome and various human neoplasia. Eur. J. Hum. Genet. 2: 3-23.
32. Mannens, M., Slater, R. M., Heyting, C., Bliek, J., de Kraker, J., Goad, N., de Pagter-Holthuizen, P., and Pearson, P. L. (1988). Molecular nature of genetic changes resulting in loss of heterozygosity of chromosome 11 in Wilms' tumors. Hum. Genet. 81: 41-48.
33. Matsuoka, S., M.C., E., Bai, C., Parker, S., Zhang, P., Baldini, A., Harper, J. W., and Elledge, S. J. (1995). p57/KIP2, a structurally distinct member of the p21/CIP1 Cdk inhibitor family, is a candidate tumor suppressor gene. Genes Dev. 9: 650-662.
34. Matsuoka, S., Thompson, J. S., Edwards, M. C., Barletta, J. M., Grundy, P., Kalikin, L. M., Harper, J. W., Elledge, S. J., and Feinberg, A. P. (1996). Imprinting of the gene encoding a human cyclindependent kinase inhibitor, p57/KIP2, on chromosome 11p15. Proc. Natl. Acad. Sci. USA 93: 3026-3030.
35. Miyamoto, T., Jinno, Y., T., S., Ikeda, Y., Masuzaki, H., Niikawa, N., and Ishikawa, M. (1996). Genomic cloning and localization to chromosome 11p15.5 of the human achaete-scute homolog 2 (ASCL2). Cytogenet. Cell. Genet. 73: 312-314.
36. Moulton, T., Crenshaw, T., Hao, Y., Moosikasuwan, J., Lin, N., Dembitzer, F., Hensle, T., Weiss, L., McMorrow, L., Loew, T., Kraus, W., Gerald, W., and Tycko, B. (1994). Epigenetic lesions at the H19 locus in Wilms' tumor patients. Nature Genet. 7: 440-447.
37. Newsham, I., Daub, D., Besnard-Guerin, C., and Cavenee, W. (1994). Molecular sublocalization and characterization of the 11;22 translocation breakpoint in a malignant rhabdoid tumor. Genomics 19: 433-440.
38. Neyroud, N., Tesson, F., Denjoy, I., Leibovici, M., Donger, C., Barhanin, J., Fauré, S., Gary, F., Coumel, P., Petit, D., Schwartz, K., and Guicheney, P. (1997). A novel mutation in the potassium channel gene KVLQT1 causes the Jervell and Lange-Nielsen cardioauditory syndrome. Nature Genet. 15: 186-189.
39. Ogawa, O., Eccles, M. R., Szeto, J., McNoe, L. A., Yun, K., Maw, M. A., Smith, P. J., and Reeve, A. E. (1993). Relaxation of insulin-like growth factor II gene imprinting implicated in Wilms' tumor. Nature 362: 749-751.
40. Ohlsson, R., Nystrom, A., Pfeifer-Ohlsson, S., Tohonen, V., Hedborg, F., Schofield, P., Flam, F., and Ekstrom, T. J. (1993). IGF2 is parentally imprinted during human embryogenesis and in the Beckwith-Wiedeman syndrome. Nature Genet. 4: 94-97.
41. Oren, R., Takahashi, S., Doss, C., Levy, R., and Levy, S. (1990). TAPA-1, the target of an antiproliferative antibody, defines a new family of transmembrane proteins. Mol. Cell. Biol. 10(8): 4007-4015.
42. Peebles, P. T., Trisch, T., and Papageorge, A. G. (1978). Isolation of four unusual pediatric solid tumor cell lines. Pediatr. Res. 12: 485.
43. Qin, S., Nowak, N. J., Zhang, J., Sait, S., Mayers, P. G., Higgins, M. J., Cheng, Y. J., Munroe, D. J., Gerhard, D. S., Weber, B. H., Bric, E., Housman, D. E., Evans, G. A., and Shows, T. B. (1996). A high-resolution physical map of human chromosome 11. Proc. Natl. Acad. Sci. USA 93: 3149-3154.
44. Rainier, S., Johnson, L. A., Dobry, C. J., Ping, A. J., Grundy, P. E., and Feinberg, A. P. (1993). Relaxation of imprinted genes in human cancer. Nature 362: 747-749.
45. Redeker, E., Hoovers, J. M. N., Alders, M., van Moorsel, C. J. A., Ivens, A. C., Gregory, S., Kalikin, L., Bliek, J., De Galan, L., van den Bogaard, R., Visser, J., van der Voort, R., Feinberg, A. P., Little, P. F. R., Westerveld, A., and Mannens, M. (1994). An integrated physical map of 210 markers assigned to the short arm of human chromosome 11. Genomics 21: 538-550.
46. Reeve, A. E., Sih, S.A., Raizis, A. M., and Feinberg, A. P. (1989). Loss of allelic heterozygosity at a second locus on chromosome 11 in sporadic Wilms' tumor cells. Mol. Cell. Biol. 9: 1799-1803.
47. Reid, L. H., Crider-Miller, S. J., West, A., Lee, M., Massague, J., and Weissman, B. E. (1996a). Genomic organization of the human p57/ KIP2 gene and its analysis in the G401 Wilms' tumor assay. Cancer Res. 56: 1214-1218.
48. Reid, L. H., West, A., Gioeli, D. G., Phillips, K., Kelleher, K. F., Araujo, D., Stanbridge, E. J., Dowdy, S. F., and Gerhard, D. S. (1996b). Localization of a tumor suppressor gene in 11p15.5 using the G401 Wilms' tumor assay. Hum. Mol. Genet. 5(2): 239-247.
49. Russell, M. W., Dick, M., Collins, F. S., and Brody, L. C. (1996). KVLQT1 mutations in three families with familial or sporadic long QT syndrome. Hum. Mol. Genet. 5(9): 1319-1324.
50. Sait, S. N. J., Nowak, N. J., Singh-Kahlon, P., Weksberg, R., Squire, J., Shows, T. B., and Higgins, M. J. (1994). Localization of Beckwith-Wiedemann and rhabdoid tumor chromosome rearrangements to a defined interval in chromosome band 11p15.5. Genes Chromosome Cancer 11: 97-105.
51. - channels conserved in flies, mice and humans. Trends Neurosci. 15: 161-166.
52. ks potassium channel. Nature 384: 80-83.
53. Schroeder, W. T., Chao, L. Y., Dao, D. D., Strong, L. C., Pathak, S., Riccardi, V., Lewis, W. H., and Saunders, G. F. (1987). Nonrandom loss of maternal chromosome 11 alleles in Wilms tumors. Am. J. Hum. Genet. 40(5): 413-420.
54. Seizinger, B. R., Klinger, H. P., Junien, C., Nakamura, Y., Le Beau, M., Cavenee, W., Emanuel, B., Ponder, B., Naylor, S., Mitelman, F., Louis, D., Menon, A., Newsham, I., Decker, J., Kaelbling, M., Henry, I., and Deimling, A. v. (1991). Report of the committee on chromosome and gene loss in human neoplasia. Cytogenet. Cell Genet. 58: 1080-1096.
55. Shepherd, N. S., Pfrogner, B. D., Coulby, J. N., Ackerman, S. L., Vaidyanathan, G., Sauer, R. H., Balkenhol, T. C., and Sternberg, N. (1994). Preparation and screening of an arrayed human genomic library generated with the P1 cloning system. Proc. Natl. Acad. Sci. USA 91: 2629-2633.
56. Shizuya, H., Birren, B., Kim, U. J., Mancino, V., Slepak, T., Tachiiri, Y., and Simon, M. (1992). Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc. Natl. Acad. Sci. USA 89(18): 8794-8797.
57. Si, Z., and Hersey, P. (1993). Expression of the neuroglandular antigen and analogues in melanoma. CD9 expression appears inversely related to metastatic potential of melanoma. Int. J. Cancer 54:37-43.
58. Steenman, M. J. C., Rainier, S., Dobry, C. J., Grundy, P., Horon, I. L., and Feinberg, A. P. (1994). Loss of imprinting of IGF2 is linked to reduced expression and abnormal methylation of H19 in Wilms' tumor. Nature Genet. 7: 433-439.
59. Strong, M., Chandy, K. G., and Gutman, G. A. (1993). Molecular evolution of voltage-sensitive ion channel genes: On the origins of electrical excitability. Mol. Biol. Evol. 10: 221-242.
60. Tanigami, A., Tokino, T., Takiguchi, S., Mori, M., Glaser, T., Park, J. W., Jones, C., and Nakamura, Y. (1992). Mapping of 262 DNA markers into 24 intervals on human chromosome 11. Am. J. Hum. Genet. 50: 56-64.
61. Todd, M. C., Xiang, R.-H., Garcia, D. K, Kerbacher, K. E., Moore, S. L., Hensel, C. H., Liu, P., Siciliano, M. J., Kok, K., Berg, A. v. d., Veldhuis, P., Buys, C. H. C. M., Killary, A. M., and Naylor, S. L. (1996). An 80 kb P1 clone from chromosome 3p21.2 suppresses tumor growth in vivo. Oncogene 13: 2387-2396.
62. Tsang, P., Gilles, F., Yuan, L., Kuo, Y.-H., Lupu, F., Samara, G., Moosikasuwan, J., Goy, A., Zelenetz, A. D., Selleri, L., and Tycko, B. (1995). A novel L23-related gene 40 kb downstream of the imprinted H19 gene is biallelically expressed in mid-fetal and adult human tissues. Hum. Mol. Genet. 4: 1499-1507.
63. Virtaneva, K. I., Emi, N., Marken, J. S., Aruffo, A., Jones, C., Spurr, N., and Schroder, J. P. (1994). Chromosomal localization of three human genes coding for A15, L6, and S5.7 (TAPA1): All members of the transmembrane 4 superfamily of proteins. Immunogenetics 39: 329-334.
64. Wadey, R. B., Pal, N., Buckle, B., Yeomans, E., Pritchard, J., and Cowell, J. K. (1989). Mapping of regions of loss of heterozygosity in Wilms' tumors. Cytogenet. Cell Genet. 51: 1100.
65. Wang, Q., Curran, M. E., Splawski, I., Burn, T. C., Millholland, J. M., VanRaay, T. J., Shen, J., Timothy, K. W., Vincent, G. M., de Jager, T., Schwartz, P. J., Towbin, J. A., Moss, A. J., Atkinson, D. L., Landes, G. M., Connors, T. D., and Keating, M. T. (1996). Positional cloning of a novel potassium channel gene: KVLQT1 mutations cause cardiac arrhythmias. Nature Genet. 12: 17-23.
66. Weissman, B. E., Saxon, P. J., Pasquale, S. R., Jones, G. R., Geiser, A. G., and Stanbridge, E. J. (1987). Introduction of a normal human chromosome 11 into a Wilms' tumor cell line controls its tumorigenic expression. Science 236: 175-180.
67. Weksberg, R., Shen, D. R., Fei, Y. L., Song, Q. L., and Squire, J. (1993a). Disruption of insulin-like growth factor 2 imprinting in Beckwith-Wiedemann syndrome. Nature Genet. 5: 143-150.
68. Weksberg, R., and Squire, J. S. (1996). Molecular biology of Beckwith-Wiedeman syndrome. Med. Fed. Oncol. 27: 464-469.
69. Weksberg, R., Teshima, I., Williams, B. R. G., Greenberg, C. R., Pueschel, S. M., Chernos, J. E., Fowlow, S. B., Hoyme, E., Anderson, I. J., Whiteman, D. A. H., Fisher, N., and Squire, J. (1993b). Molecular characterization of cytogenetic alterations associated with the Beckwith-Wiedemann syndrome (BWS) phenotype refines the localization and suggests the gene for BWS is imprinted. Hum. Mol. Genet. 2(5): 549-556.
70. Williams, J. C., Brown, K. W., Mott, M. G., and Maitland, N. J. (1989). Maternal allele loss in Wilms' tumour. Lancet 1: 283-284.
71. Wu, C., Zhu, S., Simpson, S., and de Jong, P. J. (1996). DOP-vector PCR: A method for rapid isolation and sequencing of insert termini from PAC clones. Nucleic Acids Res. 24: 2614-2615.
72. Zhang, Y., and Tycko, B. (1992). Monoallelic expression of the human H19 gene. Nature Genet. 1: 40-44.