Structure and Genomic Organization of a Second Class of Immunoglobulin Light Chain Genes in the Channel Catfish

Journal of Immunology

Volumn 159, Issue 1, 1997, Pages 250-258

  Ghaffari, Seyed H ^a   Lobb, Craig J ^a  

^a UNIVERSITY OF MISSISSIPPI SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN LIGHT CHAIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATFISH; GENETICS; GENOME; IMMUNOGLOBULIN GENE; IMMUNOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; GENES, IMMUNOGLOBULIN; GENOME; ICTALURIDAE; IMMUNOGLOBULIN LIGHT CHAINS; MOLECULAR SEQUENCE DATA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

EID: 0031181226     PISSN: 00221767     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (68)

1. Tonegawa, S. 1983. Somatic diversification of antibody diversity. Nature 302: 575.
2. Yancopoulos, G., and F. Alt. 1986. Regulation of the assembly and expression of variable region genes. Annu. Rev. Immunol. 4:339.
3. H gene family clusters. J. Exp. Med 168:2261.
4. Matsuda, P., E. K. Shin, H. Nagaoka, R. Matsumura, M. Haino, Y. Fukita, S. Taka-ishi, T. Imai, J. H. Riley, R. Anand, E. Soeda, and T. Honjo. 1993. Structure and physical map of 64 variable segments in the 3′ 0.8-megabase region of the human immunoglobulin heavy-chain locus. Nat. Genet. 3:88.
5. Cook, G. P., I. M. Tomlinson, G. Walter, H. Riethman, N. P. Carter, L. Muluwela, G. Winter, and T. H. Rabbitts. 1994. A map of the human immunoglobulin VH locus completed by analysis of the telomeric region of chromosome 14q. Nat. Genet. 7:162.
6. Kirschbaum, T., R. Jacnichen and H. G. Zachau. 1996. The mouse immunoglobulin k locus contains about 140 variable gene segments. Eur. J. Immunol. 26:1613.
7. Klein, R., and H. G. Zachau. 1995. Expression and hypermutation of human immunoglobulin k genes. Ann. NY Acad. Sci. 764:74.
8. Frippiat J. P., S. C. Williams, I. M. Tomlinson, G. P. Cook, D. Cherif, D. Le Paslier, J. E. Collins, I. Dunham, G. Winter, and M. P. Lefranc. 1995. Organization of the human immunoglobulin lambda light-chain locus on chromosome 22q11.2. Hum. Mol. Genet. 4:983.
9. Vasicek, T., and P. Leder. 1990. Structure and expression of the human immunoglobulin λ genes. J. Exp. Med. 172:609.
10. Bauser, T. R., Jr., and B. Blomberg. 1991. The human λ L chain Ig locus. Characterization of JCλ6 and identification of functional JCλ7. J. Immunol. 146:2813.
11. Max, E. E. 1993. Immunoglobulins: molecular genetics. In Fundamental Immunology. W. E. Paul, ed. Raven Press, New York, p. 315.
12. H gene loci in a primitive vertebrate. EMBO J. 7:3413.
13. Ghaffari, S. H., and C. J. Lobb. 1989. Cloning and sequence analysis of channel catfish heavy chain cDNA indicate phylogenetic diversity within the IgM immunoglobulin family. J. Immunol. 142:1356.
14. Ghaffari, S. H., and C. J. Lobb. 1989. Nucleotide sequence of channel catfish heavy chain cDNA and genomic blot analyses: implications for the phytogeny of Ig heavy chains. J. Immunol. 143:2730.
15. Amemiya, C. T., and G. W. Litman. 1990. Complete nucleotide sequence of an immunoglobulin heavy-chain gene and analysis of immunoglobulin gene organization in a primitive teleost species. Proc. Nat. Acad. Sci. USA 87:811.
16. Bengten, E., T. Leanderson, and L. Pilstrom. 1991. Immunoglobulin heavy chain cDNA from the teleost Atlantic cod (Gadus morhua L.): nucleotide sequences of secretory and membrane form show an unusual splicing pattern. Eur. J. Immunol. 21:3027.
17. Hordvik, I, A. M. Voie, J. Glette, R. Male and C. Endresen. 1992. Cloning and sequence analysis of two isotypic IgM heavy chain genes from Atlantic salmon. Eur. J. Immunol. 22:2957.
18. Anderson, E., and T. Matsunaga. 1993. Complete cDNA sequence of a rainbow trout IgM gene and evolution of vertebrate IgM constant domains. Immunogenetics 38:243.
19. Lobb, C. J., and L. W. Clem. 1983. Distinctive subpopulations of catfish serum antibody and immunoglobulin. Mol. Immunol. 20:811.
20. Lobb, C. J. 1985. Covalent structure and affinity of channel catfish antidinitrophenyl antibodies. Mol. Immunol. 22:993.
21. Ghaffari, S. H., and C. J. Lobb. 1991. Heavy chain variable region gene families evolved early in phytogeny: immunoglobulin complexity in fish. J. Immunol. 146:1037.
22. H sequences in the channel catfish. Eur. J. Immunogenet. 18:393.
23. Ventura-Holman, T., S. H. Ghaffari and C. J. Lobb. 1996. Characterization of a seventh family of immunoglobulin heavy chain VH gene segments in the channel catfish Ictalurus punctatus. Eur. J. Immunogenet. 23:7.
24. H gene families are interspersed and closely linked. Mol. Immunol. 31:823.
25. Ghaffari S. H., and C. J. Lobb. 1992. Organization of immunoglobulin heavy chain constant and joining region genes in the channel catfish. Mol. Immunol. 29:151.
26. Hayman, J. R., S. H. Ghaffari and C. J. Lobb. 1993. Heavy chain joining region segments of the channel catfish: genomic organization and phylogenetic implications. J. Immunol. 151:3587.
27. Lobb, C. J., and L. W. Clem. 1982. Fish lymphocytes differ in the expression of surface immunoglobulin. Dev. Comp. Immunol. 6:473.
28. Lobb, C. J., M. O. J. Olson, and L. W. Clem. 1984. Immunoglobulin light chain classes in a teleost fish. J. Immunol. 132:1917.
29. Ghaffari, S. H., and C. J. Lobb. 1993. Structure and genomic organization of immunoglobulin light chain in the channel catfish. An unusual genomic organizational pattern of segmental genes. J. Immunol. 151:6900.
30. Lobb, C. J., and M. O. J. Olson. 1988. Immunoglobulin heavy H chain isotypes in a teleost fish. J. Immunol. 141:1236.
31. Kabat, E. A., T. T. Wu, H. M. Perry, K. S. Gottesman, and C. Foeller. 1991. Sequences of Proteins of Immunological Interest. National Institutes of Health, Bethesda, MD.
32. Brodeur, P. H. 1987. Genes encoding the immunoglobulin variable regions. In Molecular Genetics of Immunoglobulin. F. Calabi and M. S. Neuberger, eds. Elsevier, Amsterdam, pp. 81-106.
33. K gene classification by nucleic acid sequence similarity. Immunogenetics 30:475.
34. Klein, R., R. Jaenichen, and H. G. Zachau. 1993. Expressed human Ig K genes and their hypermutation. Eur. J. Immunol. 23:3248.
35. Combriato, G., and H. G. Klobeck. 1991. Vλ and Jλ-Cλ gene segments of the human immunoglobulin A light chain locus are separated by 14 kb and rearrange by a deletion mechanism. Eur. J. Immunol. 21:1513.
36. Ford, J. E., W. A. Home, and D. M. Gibson. 1994. Light chain isotype regulation in horse: characterization of Ig k genes. J. Immunol. 153:1099.
37. Home, W. A., J. E. Ford, and D. M. Gibson. 1992. Light chain isotype regulation in horse. I. Characterization of immunoglobulin λ genes. J. Immunol. 149:3927.
38. McCartney-Francis, N., R. M. Skurla Jr., R. G. Mage, and K. E. Bernstein. 1984. K-chain allotypes and isotypes in the rabbit: cDNA sequences of clones encoding b9 suggest an evolutionary pathway and possible role of the interdomain disulfide bond in quantitative allotype expression. Proc. Natl. Acad. Sci. USA 81:1794.
39. Hayzer, D. J., and J. C. Jaton. 1989. Cloning and sequencing of two functional rabbit germ-line Ig Vλ genes. Gene 80:185.
40. Claflin, J. L., J. O. Berry, D. Flaherty, and W. Dunnick. 1987. Somatic evolution of diversity among anti-phosphocholine antibodies induced with Proteus morganil. J. Immunol. 138:3060.
41. Braun, J., and K. King. 1989. Unique V gene usage by B-Ly1 cell lines, and a discordance between isotype switch commitment and variable region hypermutation. J. Mol. Cell. Immunol. 4:121.
42. McCormack, W. T., L. W. Tjoelker, L. M. Carlson, B. Petryniak, C. F. Barth, E. H. Humphries, and C. B. Thompson. 1989. Chicken IgL gene rearrangement involves deletion of a circular cpisome and addition of single nonrandom nucleotides to both coding segments. Cell 56:785.
43. Zezza, D. J., S. E. Stewart, and L. A. Steiner. 1992. Genes encoding Ig L chains. Implications for the evolution of k and λ chains. J. Immunol. 149:3968.
44. Schwager. J., N. Burckert, M. Schwager, and M. Wilson. 1991. Evolution of immunoglobulin light chain genes: analysis of Xenopus IgL isotypes and their contribution to antibody diversity. EMBO J. 10:505.
45. L families and is related to mammalian λchains. J. Immunol. 157:1544.
46. Duggfeltd, A., E. Bengten, and L. Pilstrom. 1993. A cluster type organization of the loci of the immunoglobulin light chain in Atlantic cod (Gadus morhua L.) and rainbow trout (Oncorhynchus mykiss Walbaum) indicated by nucleotide sequences of cDNAs and hybridization analysis. Immunogenetics 38:199.
47. Lundqvist, M., E. Bengten, S. Stromberg, and L. Pilstrom. 1996. Ig light chain gene in the Siberian sturgeon (Acipenser baeri). J. Immunol. 157:2031.
48. Shamblott, M. J., and G. W. Litman. 1989. Complete nucleotide sequence of primitive vertebrate immunoglobulin light chain genes. Proc. Natl. Acad. Sci. USA 86:4684.
49. Rast, J. P., M. K. Anderson, T. Ota, R. T. Litman, M. Margittai, M. J. Shamblott, and G. W. Litman. 1994. Immunoglobulin light chain class multiplicity and alternative organization forms in early vertebrate phytogeny. Immunogenetics 40:93.
50. Hieter, P. A., E. E. Max, J. G. Seidman, J. V. Maizel, and P. Leder. 1980. Cloned human and mouse k immunoglobulin constant and J region genes conserve homology in functional segments. Cell 22:197.
51. Bernstein, K. E., E. Lamoy, N. McCartney-Francis, and R. G. Mage. 1984. Sequence of a cDNA encoding Basilea kappa light chains (K2 isotype) suggests a possible relationship of protein structure to limited expression. J. Exp. Med. 159: 635.
52. Hazer, D. J., R. M. Duvoisin, and J. C. Jaton. 1987. cDNA clones encoding rabbit immunoglobulin λ chains: evidence for length variation of the third hypervariable region and for a novel constant region. Biochem. J. 245:691.
53. Svasti, J., and C. Milstein. 1972. The complete amino acid sequence of a mouse kappa light chain. Biochem. J. 128:427.
54. Weiss, S., and G. E. Wu. 1987. Somatic point mutations in unrearranged Ig gene segments encoding the variable region of λ light chains. EMBO J. 6:927.
55. Zezza, D. J., C. A. Mikoryak, J. Schwager, and L. A. Steiner. 1991. Sequence of C region of L chains from Xenopus laevis Ig. J. Immunol. 146:4041.
56. Jones, J. C., S. H. Ghaffari and C. J. Lobb. 1993. Immunoglobulin heavy chain constant and heavy chain variable region genes in phylogenetically diverse species of bony fish. J. Mol. Evol. 36:417.
57. H gene family. Mol Biol. Evol. 11:469.
58. Andersson, E., and T. Mutsunaga. 1995. Evolution of immunoglobulin heavy chain variable region genes: a VH family can last for 150-200 million years or longer. Immunogenetics 41:18.
59. Sunchez, C., and J. Dominguez. 1991. Trout immunoglobulin populations differing in light chains revealed by monoclonal antibodies. Published erratum appears in 1992 Mol. Immunol. 29:1029. Mol Immunol. 28:1271.
60. Sunchez, C., and J. Dominguez. 1991. Trout immunoglobulin populations differing in light chains revealed by monoclonal antibodies. Published erratum appears in 1992 Mol. Immunol. 29:1029. Mol Immunol. 28:1271.
61. Adkison, M. A., B. Basurco, and R. P. Hedrick. 1996. Humoral immunoglobulins of the white sturgeon Acipenser transmontanus: partial characterization of and recognition with monoclonal antibodies. Dev. Comp. Immunol. 20:285.
62. Weaver, D., and D. Baltimore. 1987. B lymphocyte-specific protein binding near an immunoglobulin K chain gene J segment. Proc Natl. Acad. Sci. USA 84:1516.
63. k I. Nucleic Acids Res. 17:6809.
64. Martin, D. J., and B. G Van Ness. 1990. Initiation and processing of two kappa immunoglobulin germ line transcripts in mouse B cells. Mol. Cell. Biol. 10:1950.
65. Shamblott, M. J., and G. W. Litman. 1989. Genomic organization and sequences of immunoglobulin light chain genes in a primitive vertebrate suggest convolution of immunoglobulin gene organization. EMBO J. 8:3413.
66. Hohman, V. S., S. F. Schluter, and J. J. Marchalonis. 1992. Complete sequence of a cDNA clone specifying sandbar shark immunoglobulin light chain: gene organization and implications for the evolution of light chains. Proc Natl. Acad. Sci. USA 89:276.
67. Greenberg, A. S., L. Steiner, M. Kasahara, and M. F. Flajnik. 1993. Isolation of a shark immunoglobulin light chain cDNA clone encoding a protein resembling mammalian type kappa light chains: implications for the evolution of light chains. Proc. Natl. Acad. Sci. USA 90:10603.
68. Malissen, M., C. McCoy, D. Blan, J. Trucy, C. Devaux, A. Schmitt-Verhulst, F. Fitch, L. Hood, and B. Malissen. 1986. Direct evidence for chromosomal inversion during T-cell receptor β-gene rearrangements. Nature 319:28.