Isolation of coding sequences from bovine cosmids by means of exon trapping

Mammalian Genome

Volumn 8, Issue 7, 1997, Pages 486-490

  Comincini, S ^a   Drisaldi, B ^a,b   Ferretti, L ^a  

^a CNR   (Italy)

^b Dipartimento di Genetica e Microbiologia   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ACONITATE HYDRATASE; ADENOSINE TRIPHOSPHATE CITRATE LYASE; BETA ARRESTIN; DNA (CYTOSINE 5) METHYLTRANSFERASE; MICROSATELLITE DNA; RETINA S ANTIGEN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATTLE; CHROMOSOME MAP; COSMID; DNA SEQUENCE; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; HUMAN; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MOUSE; NUCLEOTIDE SEQUENCE; ONCOGENE; SEQUENCE HOMOLOGY;

ACONITATE HYDRATASE; AMINO ACID SEQUENCE; ANIMALS; ARRESTINS; ATP CITRATE (PRO-S)-LYASE; BASE SEQUENCE; CATTLE; CHROMOSOME MAPPING; CLONING, MOLECULAR; COSMIDS; DNA (CYTOSINE-5-)-METHYLTRANSFERASE; EXONS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; MICE; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; ONCOGENES; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; BOS TAURUS; BOVINAE; MAMMALIA;

EID: 0031177862     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003359900481     Document Type: Article

References (24)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215, 403-410
2. Andreadis A, Nisson PE, Kosik KS, Watkins PC (1993) The exon-trapping assay partly discriminates against alternative spliced exons. Nucleic Acids Res 21, 2217-2221
3. Barendse W, Vaiman D, Kemp S, Sugimoto Y, Armitage S, Williams J, Sun S, Eggen A, Agaba M, Aleyasin A, Band M, Bishop M, Buitkamp J, Byrne K, Collins F, Cooper L, Coupettiers W, Denis B, Drinkwater R, Easterday K, Ennis S, Erhardt G, Ferretti L, Gao Q, Georges M, Gurung R, Harlizius B, Hawkins G, Hetzel J, Hirano T, Joergensen C, Kessler M, Kirkpatrick B, Konfortov B, Kuhn C, Lenstra H, Leveziel H, Lewin H, Leyhe B, Li L, Martin Burriel I, McGraw R, Miller R, Moody D, Moore S, Nakane S, Nijman I, Olsaker I, Pomp D, Rando A, Pon M, Shalom A, Soller M, Teale A, Thieven U, Vage D, Varvio S, Velmalla R, Vilkki J, Weikard R, Woodside C, Womack J, Zanotti M, Zaragoza P (1997) A genetic linkage map of the bovine genome II. Mamm Genome 8, 21-28
4. Brown MA, Jones KA, Nicolai H, Bonjardim M, Black D, McFarlaine R, De Jong P, Quirk JP, Lehrach H, Solomon E (1995) Physical mapping, cloning, and identification of genes within a 500-kb region containing BRCA1. Proc Natl Acad Sci USA 92, 4362-4366
5. Buckler AJ, Chang DD, Graw SL, Brook JD, Haber DA, Sharp PA, Housman DE (1991) Exon amplification: a strategy to isolate mammalian genes based on RNA splicing. Proc Natl Acad Sci USA 88, 4005-4009
6. Burn TC, Connors TD, Klinger KW, Landes GM (1995) Increased exon-trapping efficiency through modifications to the pSPL3 splicing vector. Gene 161, 183-187
7. Chen H, Morris MA, Rossier C, Blouin JL, Antonarakis SE (1995) Cloning of the cDNA for the human ATP synthetase OSCP subunit (ATP50) by exon-trapping and mapping to chromosome 21q22.1-q22.2. Genomics 28, 470-476
8. Church DM, Stotler CJ, Rutter JL, Murrel JR, Trofatter JA, Buckler AJ (1994) Isolation of genes from complex sources of mammalian genomic DNA using exon amplification. Nature Genet 6, 98-104
9. Dahamane N, Charron G, Lopes C, Yaspo ML, Maunoury C, Decorte L, Sinet PM, Bloch B, Delabar JM (1995) Down syndrome-critical region contains a gene homologous to Drosophila sim expressed during rat and human central nervous system development. Proc Natl Acad Sci USA 92, 9191-9195
10. Duyk GM, Kim S, Myers RM, Cox DR (1990) Exon-trapping: a genetic screen to identify candidate transcribed sequences in cloned mammalian genomic DNA. Proc Natl Acad Sci USA 87, 8995-8999
11. Ferretti L, Leone P, Pilla F, Zhang Y, Nocart M, Guérin G (1994) Direct characterization of bovine microsatellites from cosmids: polymorphism and synteny mapping. Anim Genet 25, 209-214
12. Ferretti L, Urquhart BGD, Eggen A, Olsaker I, Harlizius B, Castiglioni B, Mezzelani A, Solinas-Toldo S, Thieven U, Zhang Y, Morgan ALG, Teres VM, Schwerin M, Martin-Burriel I, Chowdary B, Erhardt G, Njiman IJ, Cribiu EP, Barendse W, Leveziel H, Fries R, Williams JL (1997) Cosmid-derived markers anchoring the bovine genetic map to the physical map. Mamm Genome 8, 29-36
13. Hamaguchi M, Sakamoto H, Tsuruta H, Sasaki H, Muto T, Sugimura T, Terada M (1992) Establishment of a highly sensitive and specific exon-trapping system. Proc Natl Acad Sci USA 89, 9779-9783
14. Hayes H (1995) Chromosome painting with human chromosome-specific DNA libraries reveals the extent and distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71, 168-174
15. Li QY, Lennon GG, Brook JD (1996) The identification of exons from the MED/PSACH region of human chromosome 19. Genomics 32, 218-224
16. Mezzelani A, Solinas-Toldo S, Nocart M, Guérin G, Ferretti L, Fries R (1994) Mapping of syntenic groups U7 and U27 to bovine chromosomes 25 and 12, respectively. Mamm Genome 5, 574-576
17. Mezzelani A, Zhang Y, Redaelli L, Castiglioni B, Leone P, Williams J, Solinas-Toldo S, Wigger G, Fries R, Ferretti L (1995) Chromosomal localization and molecular characterization of 53 cosmid-derived bovine microsatellites. Mamm Genome 6, 629-635
18. Nehls M, Pfeifer D, Micklem G, Schmoor C, Boehm T (1994) The sequence complexity of exons trapped from the mouse genome. Curr Biol 4, 983-989
19. Redaelli L, Zhang Y, Castiglioni B, Mezzelani A, Comincini S, Guérin G, Ferretti L (1996) Characterization and mapping of three bovine polymorphic microsatellite loci. Anim Genet 27, 121
20. Ryan AM, Womack JE (1994) Somatic cell mapping of the mitochondrial aconitase gene (ACO2) to bovine chromosome 5. Anim Genet 25, 197
21. Solinas-Toldo S, Lengauer C, Fries R (1995a) Comparative genome map of human and cattle. Genomics 27, 489-496
22. Solinas-Toldo S, Mezzelani A, Hawkins GA, Bishop M, Olsaker I, Mackinlay AG, Ferretti L, Fries R (1995b) Identification of bovine chromosomes 1 to 7 based on fluorescence in situ hybridization. Cytogenet Cell Genet 69, 1-6
23. Zhang Y, Redaelli L, Castiglioni B, Mezzelani A, Ferretti L (1995) Five polymorphic bovine microsatellite loci IDVGA-62A, IDVGA-71, IDVGA-82, IDVGA-88, IDVGA-90. Anim Genet 26, 365-366
24. Zhixing Y, Nahon J (1995) DNA gyrase improves DNA transformation of E. coli cells with large recombinant plasmids. Nucleic Acids Res 23, 3353-3354