Independent modulation of Arabidopsis thaliana polyubiquitin mRNAs in different organs and in response to environmental changes

Plant Journal

Volumn 11, Issue 5, 1997, Pages 1017-1027

  Sun, Chih Wen ^a,b   Callis, Judy ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b ACADEMIA SINICA   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPOLYMER; HYBRID PROTEIN; MESSENGER RNA; NITROGEN; PLANT RNA; POLYUBIQUITIN; UBIQUITIN;

ADAPTATION; ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; COMPARATIVE STUDY; DARKNESS; ECOLOGY; ENVIRONMENT; GENE; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HEAT SHOCK RESPONSE; LIGHT; MOLECULAR GENETICS; MULTIGENE FAMILY; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; RADIATION EXPOSURE; REPORTER GENE; TISSUE DISTRIBUTION; TRANSGENIC PLANT;

ADAPTATION, BIOLOGICAL; ARABIDOPSIS; BIOPOLYMERS; DARKNESS; ECOLOGY; ENVIRONMENT; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENES, REPORTER; HEAT-SHOCK RESPONSE; LIGHT; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NITROGEN; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE PROBES; PLANTS, GENETICALLY MODIFIED; POLYUBIQUITIN; RECOMBINANT FUSION PROTEINS; RNA, MESSENGER; RNA, PLANT; TISSUE DISTRIBUTION; UBIQUITINS;

EID: 0031148910     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.1997.11051017.x     Document Type: Article

References (52)

1. Baker, R.T., Tobias, J.W. and Varshavsky, A. (1992) Ubiquitin-specific proteases of Saccharomyces cerevisiae. J. Biol. Chem. 267, 23 364-23 375.
2. Binet, M., Weil, J.-H. and Tessier, L-H. (1991) Structure and expression of sunflower ubiquitin genes. Plant Mol. Biol. 17, 395-407.
3. Bond, U., Agell, N., Haas, A.L., Redman, K. and Schlesinger, M. (1988) Ubiquitin in stressed chicken embryo fibroblasts. J. Biol. Chem. 263, 2384-2388.
4. Bowman, J. (ed) (1994) Arabidopsis: An Atlas of Morphology and Development. New York: Springer Verlag.
5. Brusslan, J.A. and Tobin, E. (1992) Light-independent developmental regulation of cab gene expression in Arabidopsis thaliana seedlings. Proc. Natl Acad. Sci. USA, 89, 7791-7795.
6. Burke, T., Callis, J. and Vierstra, R.D. (1988) Characterization of a polyubiquitin gene from Arabidopsis thaliana. Mol. Gen. Genet. 213, 435-443.
7. Callis, J. and Vierstra, R.D. (1989) Ubiquitin and ubiquitin genes in higher plants. Oxford Surveys Plant Mol. Biol., 6, 1-30.
8. Callis, J., Raasch, J. and Vierstra, R. (1990) Ubiquitin extension proteins of Arabidopsis thaliana; structure, localization and expression of their promoters in transgenic tobacco. J. Biol. Chem. 265, 12486-12493.
9. Callis, J., Carpenter, T., Sun, C.-W. and Vierstra, R.D. (1995) Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. Genetics, 139, 921-939.
10. Christensen, A.M., Sharrock, R.A. and Quail, R.H. (1992) Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation. Plant Mol. Biol. 18, 675-689.
11. Collins, M. and Hunsaker, W. (1985) Improved hybridization assays employing tailed oligonucleotide probes: a direct comparison with 5′ end-labeled oligonucleotide probes and nick-translated probes. Anal. Biochem. 151, 211-224.
12. Deng, M., Moureaux, T., Leydecker, M.T. and Caboce, M. (1990) Nitrate-reductase expression is under the control of a circadian rhythm. Planta, 180, 257-261.
13. Deshaies, R.J., Chau, V. and Kirschner, M. (1995) Ubiquitination of the G1 cyclin Cln2p by a Cdc34p-dependent pathway. EMBO J. 14, 303-312.
14. Ecker, J. and Davis, R. (1987) Plant defense genes are regulated by ethylene. Proc. Natl Acad. Sci. USA, 84, 5202-5206.
15. Ferguson, D., Guikema, J. and Paulsen, G. (1989) Ubiquitin pool modulation and protein degradation in wheat roots during high temperature stress. Plant Physiol. 92, 740-746.
16. Finley, D. and Chau, V. (1991) Ubiquitination. Ann. Rev. Cell Biol., 7, 25-69.
17. Finley, D., Ozkaynak, E. and Varshavsky, A. (1987) The yeast polyubiquitin gene is essential for resistance to high temperatures, starvation and other stresses. Cell, 48, 1035-1046.
18. Finley, D., Bartel, B. and Varshavsky, A. (1989) The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome function. Nature, 338, 394-401.
19. Fornace, A.J., Alamo, I., Hollander, C. and Lamoreaux, E. (1989) Ubiquitin mRNA is a major stress-induced transcript in mammalian cells. Nucl. Acids Res. 17, 1215-1230.
20. Genschik, P., Parmentier, Y., Durr, A., Marbach, J., Criqui, M.-C., Jamet, E. and Fleck, J. (1992) Ubiquitin genes are differentially regulated in protoplast-derived cultures of Nicotiana sylvestris and in response to various stresses. Plant Mol. Biol. 20, 897-910.
21. Giuliano, G., Hoffman, N.E., Ko, K., Scolnik, P.A. and Cashmore, A.R. (1988) A light-entrained circadian clock controls transcription of several plant genes. EMBO J. 7, 3635-3642.
22. Glotzer, M., Murray, A. and Kirschner, M. (1991) Cyclin is degraded by the ubiquitin pathway. Nature, 349, 132-138.
23. Haas, A. (1988) Immunochemical probes of ubiquitin pool dynamics. In Ubiquitin (Rechsteiner, M. ed.). New York: Plenum Press, pp. 173-206.
24. Haas, A.L. and Bright, P.M. (1985) The immunochemical detection and quantitation of intracellular ubiquitin-protein conjugates. J. Biol. Chem. 260, 12 464-12 473.
25. Hershko, A. and Ciechanover, A. (1992) The ubiquitin system. Annu. Rev. Biochem. 61, 761-807.
26. Hochstrasser, M., Ellison, M.J., Chau, V. and Varshavsky, A. (1991) The short-lived MATα2 transcriptional regulator is ubiquitinated in vivo. Proc. Natl Acad. Sci. USA, 88, 4606-4610.
27. Jefferson, R. (1987) Assaying chimeric genes in plants: the GUS gene fusion system. Plant Mol. Biol. Rep. 5, 387-405.
28. Jonnalagadda, S., Butt, T.R., Monia, B.R., Mirabelli, C.K., Gotlib, L., Ecker, D.J. and Crooke, S.T. (1989) Multiple (αNH-ubiquitin) protein endoproteases in cells. J. Biol. Chem. 264, 10 637-10 642.
29. Kloppstech, K. (1985) Diurnal and circadian rhymicity in the expression of light-induced plant nuclear messenger RNAs. Planta, 165, 502-506.
30. Kornitzer, D., Raboy, B., Kulka, R.G. and Fink, G.R. (1994) Regulated degradation of the transcription factor Gcn4. EMBO J. 13, 6021-6030.
31. Learned, R.M. (1996) Light suppresses 3-hydroxy-3-methylglutaryl coenzyme A reductase gene expression in Arabidopsis thaliana. Plant Physiol. 110, 645-655.
32. Lechner, F.J. and Rau, W. (1993) A complex pattern of changes in polysomal mRNA populations is evident in the leaves of Arabidopsis thaliana (L.) Heynh. during photoperiodic induction of flowering. Planta, 189, 522-532.
33. Leutwiler, L., Meyerowitz, E. and Tobin, E. (1986) Structure and expression of three light-harvesting chlorophyll a/b binding protein genes in Arabidopsis thaliana. Nucl. Acids Res. 14, 4051-4064.
34. Liu, L., Maillet, D.S., Frappier, R.H., Walden, D.B. and Atkinson, B.C. (1995) Characterization, chromosomal mapping, and expression of different polyubiquitin genes in tissues from control and heat-shocked maize seedlings. Biochem. Cell Biol. 73, 19-30.
35. Miller, H. I., Henzel, W.J., Ridway, J., Kuang, W., Chisholm, V. and Liu, C. (1989) Cloning and expression of a yeast ubiquitin-protein cleaving activity in Escherichia coli. BioTechnology, 7, 698-704.
36. Norris, S., Meyer, S. and Callis, J. (1993) The intron of Arabidopsis polyubiquitin genes is conserved in location and is a quantitative determinant of chimeric gene expression. Plant Mol. Biol. 21, 895-906.
37. Parag, H.A., Raboy, B. and Kulka, R.G. (1987) Effect of heat shock on protein degradation in mammalian cells: involvement of the ubiquitin system. EMBO J. 6, 55-61.
38. Pratt, G., Deveraux, Q. and Rechsteiner, M. (1989) Ubiquitin metabolism in stressed mammalian cells. In Stress-Induced Proteins (Pardue, M.L., Feramisco, J.R., Lindquist, S., eds). New York: Alan Liss Inc., pp. 143-159.
39. Redman, K.L. and Rechsteiner, M. (1989) Identification of the long ubiquitin extension as ribosomal protein S27a. Nature, 338, 438-440.
40. Schlesinger, M.J. and Bond, U. (1987) Ubiquitin genes. Oxford Surveys Eukaryotic Genes, 4, 77-89.
41. Seufert, W., Futcher, B. and Jentsch, S. (1995) Role of a ubiquitin-conjugating enzyme in degradation of S- and M-phase cyclins. Nature, 373, 78-81.
42. Shanklin, J., Jabben, M. and Vierstra, R.D. (1987) Red light-induced formation of ubiquitin-phytochrome conjugates: identification of possible intermediates of phytochrome degradation. Proc. Natl Acad. Sci. USA, 84, 359-363.
43. Siegelman, M., Bond, M.W., Gallitin, W.M., St. John, T., Smith, H.T., Fried, V.A. and Weissman, I.L (1986) Cell surface molecule associated with lymphocyte homing is a ubiquitinated branched-chain glycoprotein. Science, 231, 823-829.
44. Somerville, C.R. and Ogren, W.L. (1982) Isolation of photo-respiration mutants in Arabidopsis thaliana. In Methods in Chloroplast Molecular Biology (Edelman, M., Hallick, R.B. and Chua, N.-H., eds). New York: Elsevier Biomedical Press, pp. 129-139.
45. Spector, T. (1978) Refinement of the Coomassie blue method of protein quantification. Anal. Biochem. 86, 142-146.
46. Sugita, M. and Gruissem, W. (1987) Developmental, organ-specific, and light-dependent expression of the tomato ribulose-1,5-bisphosphate carboxylase small subunit gene family. Proc. Natl Acad. Sci USA, 84, 7104-7108.
47. Sullivan, M.L., Callis, J. and Vierstra, R.D. (1990) High performance liquid chromatography resolution of ubiquitin pathway enzymes from wheat germ. Plant Physiol. 94, 710-716.
48. Valvekens, D., Van Montagu, M. and Van Lijsebettens, M. (1988) Agrobacterium tumefaciens-mediated transformation of Arabidopsis thaliana explants by using kanamycin selection. Proc. Natl Acad. Sci. USA, 85, 5536-5540.
49. Wu, C.H., Casoar, T., Browse, J., Lindquist, S. and Somerville, C. (1988) Characterization of an HSP70 cognate gene family in Arabidopsis. Plant Physiol. 88, 731-740.
50. Yaglom, J., Linskens, M.H.K., Sadis, S., Rubin, D.M., Futcher, B. and Finley, D. (1995) p34Cdc28-mediated control of Cln3 cyclin degradation. Mol. Cell. Biol. 15, 731-741.
51. Yarden, Y., Escobedo, J.A., Kuang, W.-J. et al. (1986) Structure of the receptor for platelet-derived growth factor helps define a family of closely related growth factor receptors. Nature, 323, 226-232.
52. Zimmer, E.A., Jupe, E.R. and Walbot, V. (1988) Ribosomal gene structure, variation and inheritance in maize and its ancestors. Genetics, 120, 1125-1136.