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Volumn 1, Issue 2, 1997, Pages 79-88

DNA binding and nuclease protection by the HMf histones from the hyperthermophilic archaeon Methanothermus fervidus

Author keywords

Bent DNA; DNA Binding; Gel mobility shift assay; Nuclease protection; Nucleosomes

Indexed keywords

ARCHAEA; EUKARYOTA; METHANOTHERMUS FERVIDUS;

EID: 0031129933     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007920050018     Document Type: Article
Times cited : (29)

References (50)
  • 1
    • 0027431478 scopus 로고
    • Topography of the histone octamer surface: Repeating structural motifs utilized in the docking of nucleosomal DNA
    • Arents G, Moudrianakis EN (1993) Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA. Proc Natl Acad Sci USA 90:10489-10493
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 10489-10493
    • Arents, G.1    Moudrianakis, E.N.2
  • 2
    • 0025837183 scopus 로고
    • The nucleosomal core histone octamer at 3,1 Å resolution: A tripartite protein assembly and a left-handed superhelix
    • Arents G, Burlingame RW, Wang B-C, Love WE, Moudrianakis EN (1991) The nucleosomal core histone octamer at 3,1 Å resolution: a tripartite protein assembly and a left-handed superhelix. Proc Natl Acad Sci USA 88:10148-10152
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10148-10152
    • Arents, G.1    Burlingame, R.W.2    Wang, B.-C.3    Love, W.E.4    Moudrianakis, E.N.5
  • 6
    • 0028930574 scopus 로고
    • Methanobacterium formicicum, a mesophilic methanogen, contains three HFo histones
    • Darcy TJ, Sandman KS, Reeve JN (1995) Methanobacterium formicicum, a mesophilic methanogen, contains three HFo histones. J Bacteriol 177:858-860
    • (1995) J Bacteriol , vol.177 , pp. 858-860
    • Darcy, T.J.1    Sandman, K.S.2    Reeve, J.N.3
  • 8
    • 0022230224 scopus 로고
    • DNA bending and its relation to nucleosome positioning
    • Drew HR, Travers AA (1985) DNA bending and its relation to nucleosome positioning. J Mol Biol 186:773-790
    • (1985) J Mol Biol , vol.186 , pp. 773-790
    • Drew, H.R.1    Travers, A.A.2
  • 9
    • 0001221237 scopus 로고    scopus 로고
    • Large scale synthesis of cyclodiphospho-D-glycerate
    • Earle MJ, Abdur-Rashid A, Priestley ND (1996) Large scale synthesis of cyclodiphospho-D-glycerate. J Org Chem 61:5697-5700
    • (1996) J Org Chem , vol.61 , pp. 5697-5700
    • Earle, M.J.1    Abdur-Rashid, A.2    Priestley, N.D.3
  • 10
    • 0027248058 scopus 로고
    • A modified alkaline lysis method for the preparation of highly purified plasmid from Escherichia coli
    • Feliciello I, Chinali G (1993) A modified alkaline lysis method for the preparation of highly purified plasmid from Escherichia coli. Anal Biochem 212:394-401
    • (1993) Anal Biochem , vol.212 , pp. 394-401
    • Feliciello, I.1    Chinali, G.2
  • 11
    • 17544367055 scopus 로고    scopus 로고
    • Nucleosome assembly on CTG triplet repeats
    • Godde JS, Wolffe AP (1996) Nucleosome assembly on CTG triplet repeats. J Biol Chem 271:15222-15229
    • (1996) J Biol Chem , vol.271 , pp. 15222-15229
    • Godde, J.S.1    Wolffe, A.P.2
  • 12
    • 0028204256 scopus 로고
    • Archaeal DNA binding proteins and chromosome structure
    • Grayling RA, Sandman K, Reeve JN (1994) Archaeal DNA binding proteins and chromosome structure. Syst Appl Microbiol 16:582-590
    • (1994) Syst Appl Microbiol , vol.16 , pp. 582-590
    • Grayling, R.A.1    Sandman, K.2    Reeve, J.N.3
  • 13
    • 0029006334 scopus 로고
    • Structure and stability of histone HMf from the hyperthermophilic archaeon Methanothermus fervidus
    • Grayling RA, Becktel WJ, Reeve JN (1995) Structure and stability of histone HMf from the hyperthermophilic archaeon Methanothermus fervidus. Biochemistry 34:8441-8448
    • (1995) Biochemistry , vol.34 , pp. 8441-8448
    • Grayling, R.A.1    Becktel, W.J.2    Reeve, J.N.3
  • 15
    • 0030012909 scopus 로고    scopus 로고
    • Histones and chromatin in hyperthermophilic Archaea
    • Grayling RA, Sandman K. Reeve JN (1996b) Histones and chromatin in hyperthermophilic Archaea. FEMS Microbiol Rev 18:203-213
    • (1996) FEMS Microbiol Rev , vol.18 , pp. 203-213
    • Grayling, R.A.1    Sandman, K.2    Reeve, J.N.3
  • 16
    • 0025222518 scopus 로고
    • Histone function in transcription
    • Grunstein M (1990) Histone function in transcription. Annu Rev Cell Biol 6:563-678
    • (1990) Annu Rev Cell Biol , vol.6 , pp. 563-678
    • Grunstein, M.1
  • 18
    • 0026010309 scopus 로고
    • Histone contributions to the structure of DNA in the nucleosome
    • Hayes JJ, Clark DJ, Wolffe AP (1991) Histone contributions to the structure of DNA in the nucleosome. Proc Natl Acad Sci USA 88:6829-6833
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 6829-6833
    • Hayes, J.J.1    Clark, D.J.2    Wolffe, A.P.3
  • 19
    • 0001912876 scopus 로고
    • Thermoadaptation of methanogenic bacteria by intracellular ion concentration
    • Hensel R, König H (1988) Thermoadaptation of methanogenic bacteria by intracellular ion concentration. FEMS Microbiol Lett 49:75-79
    • (1988) FEMS Microbiol Lett , vol.49 , pp. 75-79
    • Hensel, R.1    König, H.2
  • 20
    • 0026474693 scopus 로고
    • HMf, a histone-related protein from the hyperthermophilic archaeon Methanothermus fervidus, binds preferentially to DNA containing phased tracts of adenines
    • Howard MT, Sandman K, Reeve JN, Griffith JD (1992) HMf, a histone-related protein from the hyperthermophilic archaeon Methanothermus fervidus, binds preferentially to DNA containing phased tracts of adenines. J Bacteriol 174:7864-7867
    • (1992) J Bacteriol , vol.174 , pp. 7864-7867
    • Howard, M.T.1    Sandman, K.2    Reeve, J.N.3    Griffith, J.D.4
  • 21
    • 0023664191 scopus 로고
    • Hybrid pUC vectors for addition of new restriction enzyme sites to the ends of DNA fragments
    • Kay R, McPherson J (1987) Hybrid pUC vectors for addition of new restriction enzyme sites to the ends of DNA fragments. Nucleic Acids Res 15:2778
    • (1987) Nucleic Acids Res , vol.15 , pp. 2778
    • Kay, R.1    McPherson, J.2
  • 22
    • 0024814234 scopus 로고
    • Bending of DNA by gene-regulatory proteins: Construction and use of a DNA bending vector
    • Kim J, Zwieb C, Adhya S (1989) Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector. Gene 85:15-23
    • (1989) Gene , vol.85 , pp. 15-23
    • Kim, J.1    Zwieb, C.2    Adhya, S.3
  • 23
    • 0026727120 scopus 로고
    • Chromatin structure and transcription
    • Kornberg RD, Lorch Y (1992) Chromatin structure and transcription. Annu Rev Cell Biol 8:563-587
    • (1992) Annu Rev Cell Biol , vol.8 , pp. 563-587
    • Kornberg, R.D.1    Lorch, Y.2
  • 24
    • 0020524722 scopus 로고
    • A plasmid in the archaebacterium Methanobaaerium thermoautotrophicum
    • Meile L, Keiner A, Leisinger T (1983) A plasmid in the archaebacterium Methanobaaerium thermoautotrophicum. Mol Gen Genet 191:480-484
    • (1983) Mol Gen Genet , vol.191 , pp. 480-484
    • Meile, L.1    Keiner, A.2    Leisinger, T.3
  • 25
    • 0025885691 scopus 로고
    • DNA binding by the archaeal histone HMf results in positive supercoiling
    • Musgrave DR, Sandman KM, Reeve JN (1991) DNA binding by the archaeal histone HMf results in positive supercoiling. Proc Natl Acad Sci USA 88:10397-10401
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10397-10401
    • Musgrave, D.R.1    Sandman, K.M.2    Reeve, J.N.3
  • 26
    • 0016144734 scopus 로고
    • Subunit structure of chromatin
    • Noll M (1974a) Subunit structure of chromatin. Nature 251:249-251
    • (1974) Nature , vol.251 , pp. 249-251
    • Noll, M.1
  • 27
    • 0016133106 scopus 로고
    • Internal structure of the chromatin subunit
    • Noll M (1974b) Internal structure of the chromatin subunit. Nucleic Acids Res 1:1573-1578
    • (1974) Nucleic Acids Res , vol.1 , pp. 1573-1578
    • Noll, M.1
  • 29
    • 0027237839 scopus 로고
    • Histone-DNA contacts in the nucleosome core containing a Xenopus 5S rRNA gene
    • Pruss D, Wolffe AP (1993) Histone-DNA contacts in the nucleosome core containing a Xenopus 5S rRNA gene. Biochemistry 32:6810-6814
    • (1993) Biochemistry , vol.32 , pp. 6810-6814
    • Pruss, D.1    Wolffe, A.P.2
  • 30
    • 0029608731 scopus 로고
    • The histone fold: Evolutionary questions
    • Ramakrishnan V (1995) The histone fold: evolutionary questions. Proc Natl Acad Sci USA 92:11328-11330
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11328-11330
    • Ramakrishnan, V.1
  • 31
    • 0029669996 scopus 로고    scopus 로고
    • Purification and characterization of a histone-like protein from the archaeal isolate AN1, a member of the Thermococcales
    • Ronimus RS, Musgrave DR (1996) Purification and characterization of a histone-like protein from the archaeal isolate AN1, a member of the Thermococcales. Mol Microbiol 20:77-86
    • (1996) Mol Microbiol , vol.20 , pp. 77-86
    • Ronimus, R.S.1    Musgrave, D.R.2
  • 33
    • 0025301592 scopus 로고
    • HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones
    • Sandman K, Krzycki JA, Dobrinski B, Lurz R, Reeve JN (1990) HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones. Proc Natl Acad Sci USA 87:5788-5791
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 5788-5791
    • Sandman, K.1    Krzycki, J.A.2    Dobrinski, B.3    Lurz, R.4    Reeve, J.N.5
  • 34
    • 0028130396 scopus 로고
    • Histone-encoding genes from Pyrococcus: Evidence for members of the HMf family of archaeal histones in a non-methanogenic archaeon
    • Sandman K, Perler FB, Reeve JN (1994a) Histone-encoding genes from Pyrococcus: evidence for members of the HMf family of archaeal histones in a non-methanogenic archaeon. Gene 150:207-208
    • (1994) Gene , vol.150 , pp. 207-208
    • Sandman, K.1    Perler, F.B.2    Reeve, J.N.3
  • 35
    • 0028604578 scopus 로고
    • Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus
    • Sandman K, Grayling RA, Dobrinski B, Lurz R, Reeve JN (1994b) Growth-phase-dependent synthesis of histones in the archaeon Methanothermus fervidus. Proc Natl Acad Sci USA 91:12624-12628
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 12624-12628
    • Sandman, K.1    Grayling, R.A.2    Dobrinski, B.3    Lurz, R.4    Reeve, J.N.5
  • 36
    • 0029065387 scopus 로고
    • Improved N-terminal processing of recombinant proteins synthesized in Escherichia coli
    • Sandman K, Grayling RA, Reeve JN (1995) Improved N-terminal processing of recombinant proteins synthesized in Escherichia coli. Bio/Technology 13:504-506
    • (1995) Bio/Technology , vol.13 , pp. 504-506
    • Sandman, K.1    Grayling, R.A.2    Reeve, J.N.3
  • 37
    • 0023001414 scopus 로고
    • Sequence periodicities in chicken nucleosome core DNA
    • Satchwell SC, Drew HR, Travers AA (1986) Sequence periodicities in chicken nucleosome core DNA. J Mol Biol 191:659-675
    • (1986) J Mol Biol , vol.191 , pp. 659-675
    • Satchwell, S.C.1    Drew, H.R.2    Travers, A.A.3
  • 38
    • 0029610588 scopus 로고
    • Characterization of the binding of HU and IMF, homologous histone-like proteins of Escherichia coli, to curved and un-curved DNA
    • Shimizu M, Miyake M, Kanke F, Masumoto U, Shindo H (1995) Characterization of the binding of HU and IMF, homologous histone-like proteins of Escherichia coli, to curved and un-curved DNA. Biochim Biophys Acta 1264:330-336
    • (1995) Biochim Biophys Acta , vol.1264 , pp. 330-336
    • Shimizu, M.1    Miyake, M.2    Kanke, F.3    Masumoto, U.4    Shindo, H.5
  • 39
    • 0029924193 scopus 로고    scopus 로고
    • NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone
    • Starich MR, Sandman K, Reeve JN, Summers MF (1996) NMR structure of HMfB from the hyperthermophile, Methanothermus fervidus, confirms that this archaeal protein is a histone. J Mol Biol 255:187-203
    • (1996) J Mol Biol , vol.255 , pp. 187-203
    • Starich, M.R.1    Sandman, K.2    Reeve, J.N.3    Summers, M.F.4
  • 41
    • 0023984840 scopus 로고
    • AUGUR: A program to predict, display and analyze the tertiary structure of B-DNA
    • Tan RK-Z, Prabhakaran M, Tung C-S, Harvey SC (1988) AUGUR: a program to predict, display and analyze the tertiary structure of B-DNA. Comput Appl Biosci 4:147-151
    • (1988) Comput Appl Biosci , vol.4 , pp. 147-151
    • Tan, R.K.-Z.1    Prabhakaran, M.2    Tung, C.-S.3    Harvey, S.C.4
  • 42
    • 0026571527 scopus 로고
    • Nucleosome positioning
    • Thoma F (1992) Nucleosome positioning, Biochim Biophys Acta 1130:1-19
    • (1992) Biochim Biophys Acta , vol.1130 , pp. 1-19
    • Thoma, F.1
  • 45
    • 0023177513 scopus 로고
    • Estimation of wedge components in curved DNA
    • Ulanovsky LE, Trifonov EN (1987) Estimation of wedge components in curved DNA. Nature 326:720-722
    • (1987) Nature , vol.326 , pp. 720-722
    • Ulanovsky, L.E.1    Trifonov, E.N.2
  • 47
    • 0028236523 scopus 로고
    • Transcription: In time with histones
    • Wolffe A (1994) Transcription: in time with histones. Cell 77:13-16
    • (1994) Cell , vol.77 , pp. 13-16
    • Wolffe, A.1
  • 49
    • 0021943518 scopus 로고
    • Improved M13 phage cloning vectors and host strains: Nucleotide sequences of the M13mp18 and pUC19 vectors
    • Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119
    • (1985) Gene , vol.33 , pp. 103-119
    • Yanisch-Perron, C.1    Vieira, J.2    Messing, J.3
  • 50
    • 0039751830 scopus 로고
    • Detection of DNA bending by gel electrophoresis: Use of plasmid vectors
    • Jost JP, Saluz HP (eds) Birkhäuser, Boston
    • Zwieb C, Kim J, Adhya S (1991) Detection of DNA bending by gel electrophoresis: use of plasmid vectors. In: Jost JP, Saluz HP (eds) A laboratory guide to in vitro studies of protein-DNA interactions. Birkhäuser, Boston, pp 245-254
    • (1991) A Laboratory Guide to in Vitro Studies of Protein-DNA Interactions , pp. 245-254
    • Zwieb, C.1    Kim, J.2    Adhya, S.3


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