Floating stereospecific assignment revisited: Application to an 18 kDa protein and comparison with J-coupling data

Journal of Biomolecular NMR

Volumn 9, Issue 3, 1997, Pages 245-258

  Folmer, Rutger H A ^a   Hilbers, Cornelis W ^a   Konings, Ruud N H ^a   Nilges, Michael ^b  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

Floating chirality; Simulated annealing; ssDNA binding protein; Stereospecific assignment; Structure calculation

Indexed keywords

DNA BINDING PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BACTERIOPHAGE; BIOSYNTHESIS; CALORIMETRY; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; METABOLISM; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN CONFORMATION; PROTEIN SECONDARY STRUCTURE; PSEUDOMONAS; VIROLOGY;

AMINO ACID SEQUENCE; BACTERIOPHAGES; CALORIMETRY; DNA-BINDING PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PSEUDOMONAS;

EID: 0031110495     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018670623695     Document Type: Article

References (40)

1. Archer, S.J., Ikura, M., Torchia, D.A. and Bax, A. (1991) J. Magn. Reson., 95, 636-641.
2. Beckman, R.A., Litwin, S. and Wand, A.J. (1993) J. Biomol. NMR, 3, 675-700.
3. Berendsen, H.J.C., Postma, J.P.M., van Gunsteren, W.F., Di Nola, A. and Haak, J.R. (1984) J. Chem. Phys., 81, 3684-3690.
4. Brünger, A.T., Clore, G.M., Gronenborn, A.M. and Karplus, M. (1986) Proc. Natl. Acad. Sci. USA, 83, 3801-3805.
5. Brünger, A.T., Clore, G.M., Gronenborn, A.M. and Karplus, M. (1987) Protein Eng., 1, 399-406.
6. Brünger, A.T. (1992) X-PLOR. A System for X-ray Crystallography and NMR, Yale University Press, New Haven, CT, U.S.A.
7. Cavanagh, J., Palmer, A.G., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 91, 429-436.
8. Driscoll, P.C., Gronenborn, A.M. and Clore, G.M. (1989) FEBS Lett., 243, 223-233.
9. Engh, R. and Huber, R. (1991) Acta Crystallogr., A47, 392-400.
10. Fletcher, C.M., Jones, D.N.M., Diamond, R. and Neuhaus, D. (1996) J. Biomol. NMR, 8, 292-310.
11. Folmer, R.H.A., Folkers, P.J.M., Kaan, A., Jonker, A.J., Aelen, J.M.A., Konings, R.N.H. and Hilbers, C.W. (1994) Eur. J. Biochem., 224, 663-676.
12. Folmer, R.H.A., Hilbers, C.W., Konings, R.N.H. and Hallenga, K. (1995a) J. Biomol. NMR, 5, 427-432.
13. Folmer, R.H.A., Nilges, M., Konings, R.N.H. and Hilbers, C.W. (1995b) EMBO J., 14, 4132-4142.
14. Grzesiek, S., Vuister, G.W. and Bax, A. (1993) J. Biomol. NMR, 3, 487-493.
15. Grzesiek, S., Kuboniwa, H., Hinck, A.P. and Bax, A. (1995) J. Am. Chem. Soc., 117, 5312-5315.
16. Güntert, P., Braun, W., Billeter, M. and Wüthrich, K. (1989) J. Am. Chem. Soc., 111, 3997-4004.
17. Güntert, P., Braun, W. and Wüthrich, K. (1991) J. Mol. Biol., 217, 517-530.
18. Habazettl, J., Cieslar, C., Oschkinat, H. and Holak, T.A. (1990) FEBS Lett., 268, 141-145.
19. Havel, T.F. (1991) Prog. Biophys. Mol. Biol., 56, 43-78.
20. Holak, T.A., Nilges, M. and Oschkinat, H. (1989) FEBS Lett., 242, 649-654.
21. Hyberts, S.G., Märki, W. and Wagner, G. (1987) Eur. J. Biochem., 164, 625-635.
22. Ikura, M., Kay, L.E., Tschudin, R. and Bax, A. (1990) J. Magn. Reson., 86, 204-209.
23. Kay, L.E., Keifer, P. and Saarinen, T. (1992) J. Am. Chem. Soc., 114, 10663-10665.
24. Koning, T.M.G., Boelens, R. and Kaptein, R. (1990) J. Magn. Reson., 90, 111-123.
25. Konnert, J.H. and Hendrickson, W.A. (1980) Acta Crystallogr., A36, 344-350.
26. Kraulis, P.J. (1991) J. Appl. Crystallogr., 24, 946-950.
27. Nilges, M., Gronenborn, A.M., Brünger, A.T. and Clore, G.M. (1988) Protein Eng., 2, 27-38.
28. Nilges, M., Clore, G.M. and Gronenborn, A.M. (1990) Biopolymers, 29, 813-822.
29. Nilges, M., Kuszewski, J. and Brünger, A.T. (1991) In Computational Aspects of the Study of Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy (Eds., Hoch, J.C., Poulsen, F.M. and Redfield, C.), Plenum, New York, NY, U.S.A., pp. 451-455.
30. Nilges, M. (1993) Proteins, 17, 297-309.
31. Palmer, A.G., Cavanagh, J., Wright, P.E. and Rance, M. (1991) J. Magn. Reson., 93, 151-170.
32. Shaka, A.J., Barker, P.B. and Freeman, R. (1985) J. Magn. Reson., 64, 547-553.
33. Silver, M.S., Joseph, R.I. and Hoult, D.I. (1984) J. Magn. Reson., 59, 347-353.
34. Tropp, J. (1980) J. Chem. Phys., 72, 6035-6043.
35. Vuister, G.W., Wang, A.C. and Bax, A. (1993) J. Am. Chem. Soc., 115, 5334-5335.
36. Weber, P.L., Morrison, R. and Hare, D. (1988) J. Mol. Biol., 204, 483-487.
37. Williamson, M.P. and Madison, V.S. (1990) Biochemistry, 29, 2895-2905.
38. Wüthrich, K., Billeter, M. and Braun, W (1983) J. Mol. Biol., 169, 949-961.
39. Zhao, D. and Jardetzky, O. (1994) J. Mol. Biol., 239, 601-607.
40. Zuiderweg, E.R.P., Boelens, R. and Kaptein, R. (1985) Biopolymers, 24, 601-611.