Polymyxin B nonapeptide: Conformations in water and in the lipopolysaccharide-bound state determined by two-dimensional NMR and molecular dynamics

Biopolymers

Volumn 41, Issue 3, 1997, Pages 251-265

  Bhattacharjya, Surajit ^a   David, Sunil A ^b   Mathan, V I ^b   Balaram, P ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

^b CHRISTIAN MEDICAL COLLEGE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; CHARACTERIZATION; CONFORMATIONS; MOLECULAR DYNAMICS; PARAMAGNETIC RESONANCE; PHASE COMPOSITION; POLYSACCHARIDES; WATER;

BACILLUS POLYMYXA; LIPOPOLYSACCHARIDE; PEPTIDE; POLYMYXIN NONAPEPTIDE; TRANSFERRED NUCLEAR OVERHAUSER EFFECT;

BIOPOLYMERS;

LIPID A; LIPOPOLYSACCHARIDE; POLYMYXIN B NONAPEPTIDE; POLYMYXIN DERIVATIVE;

AQUEOUS SOLUTION; ARTICLE; MODEL; MOLECULAR DYNAMICS; NUCLEAR OVERHAUSER EFFECT; PROTEIN BINDING; PROTEIN CONFORMATION; PROTON NUCLEAR MAGNETIC RESONANCE;

EID: 0031106743     PISSN: 00063525     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0282(199703)41:3<251::AID-BIP2>3.0.CO;2-R     Document Type: Article

References (58)

1. Westphal, O. (1975) Transact. Coll. Int. Aller. 49, 1-43.
2. Raetz, C. R. H. (1990) Ann. Rev. Biochem. 59, 129-170.
3. Fink, P. F. (1990) in Sepsis Syndrome. Handbook of Critical Care. 3rd ed., Berk, J. L. & Sampliner, J. E., Eds., Little, Brown & Co., Boston, p. 619.
4. Hamil, R. J. & Maki, D. G. (1984) in Handbook of Endotoxin: Vol. 4. Clinical Aspects of Endotoxin Shock, Proctor, R. A., Ed., Elsevier, Amsterdam, p. 55.
5. Johnston, J. (1991) J. NIH Res. 3, 61-65.
6. Corriveau, C. C. & Danner, R. L. (1993) Infect. Agents Dis. 2, 235-243.
7. Corriveau, C. C. & Danner, R. L. (1993) Infect. Agents Dis. 2, 244-252.
8. Stone, R. (1994) Science 264, 365-367.
9. Kotani, S., Takada, H., Tsujimoto, M., Ogawa, T., Takahashi, I., Ikeda, T., Otsuka, K., Shimauchi, H., et al. (1985) Infect. Immunol. 49, 225-230.
10. Storm, D. R., Rosenthal, K. S. & Swanson, P. E. (1977) Ann. Rev. Biochem. 46, 723-763.
11. Morrison, D. C. & Jacobs, D. M. (1976) Immunochemistry 13, 813-818.
12. David, S. A., Balasubramanian, K. A., Mathan, V. I. & Balaram, P. (1992) Biochim. Biophys. Acta 1165, 147-152.
13. Stokes, D. C., Shenep, J. L., Fishman, M., Hildner, W. K., Bysani, G. K. & Rufus, K. (1989) J. Infect. Dis. 160, 52-57.
14. Rustici, A., Velucchi, M., Faggioni, R., Sironi, M., Ghezzi, P., Quataert, S., Green, B. & Porro, M. (1993) Science 259, 361-365.
15. Chapman, T. M. & Golden, M. R. (1972) Biochem. Biophys. Res. Commun. 46, 2040-2047.
16. Perkins, S. J., Radda, G. K. & Richards, R. E. (1978) Eur. J. Biochem. 82, 551-561.
17. Vaara, M. & Vaara, T. (1983) Nature 303, 526-528.
18. Rance, M., Sorensen, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R. & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 117, 479-485.
19. Davis, D. G. & Bax, A. (1985) J. Am. Chem. Soc. 107, 2820-2821.
20. Kumar, A., Wagner, G., Ernst, R. R. & Wüthrich, K. (1981) J. Am. Chem. Soc. 103, 3654-3658.
21. Bothner-By, A. A., Stephens, R. L., Lee, J., Warren, C. D. & Jeanloz, R. W. (1984) J. Am. Chem. Soc. 106, 811-813.
22. Balaram, P., Bothner-By, A. A. & Breslow, E. (1972) J. Am. Chem. Soc. 94, 4017-4018.
23. Clore, G. M. & Gronenborn, A. M. (1982) J. Magn. Reson. 48, 402-417.
24. Campbell, A. P. & Sykes, B. D. (1993) Ann. Rev. Biophys. Biomol. Struct. 22, 99-122.
25. Ni, R & Scheraga, H. A. (1994) Acc. Chem. Res. 27, 257-264.
26. Dauber-Ogusthorpe, P., Roberts, V. A., Ogusthorpe, D. J., Wolff, J., Genest, M. & Hagler, A. T. (1988) Proteins Struc. Funct. Genet. 4, 31-47.
27. Press, W. H., Flannery, B. P., Teukolsky, S. A. & Velterling, W. T. (1986) in Numerical Recipies, The Art of Scientific Computing, Cambridge University Press, Cambridge.
28. Neuhaus, D. & Williamson, M. (1989) in The Nuclear Overhauser Effect in Structural and Conformational Analysis, VCH Publishers, New York.
29. Hagler, A. T., Ogusthorpe, D. J., Dauber-Ogusthorpe, P. & Hemple, J. C. (1985) Science 227, 1309-1315.
30. Saulitis, J., Dale, F. M., Byk, G., Gilon, C. & Kessler, H. (1992) J. Am. Chem. Soc. 114, 4818-4827.
31. Verlet, L. (1967) Phys. Rev. 159, 266-274.
32. Kastowsky, M., Sabisch, A., Gutbertlet, T. & Bradaczek, H. (1991) Eur. J. Biochem. 197, 707-716.
33. Wüthrich, K. (1986) in NMR of Proteins and Nucleic Acids, Wiley Interscience, New York.
34. Ernst, R. R., Bodenhausen, G. & Wokaun, A. (1987) in Principles of Nuclear Magnetic Resonance in One and Two Dimensions, Clarendon Press, Oxford.
35. Kessler, H., Matthias, G. & Griesinger, C. (1988) Angew. Chem. Int. Ed. Engl. 27, 490-536.
36. Bax, A. (1989) Ann. Rev. Biochem. 58, 223-256.
37. Pardi, A., Billeter, M. & Wüthrich, K. (1984) J. Mol. Biol. 180, 741-751.
38. Rose, G. D., Gierasch, L. M. & Smith, J. A. (1985) Adv. Protein Chem. 37, 1-109.
39. Wright, P. E., Dyson, H. J. & Lerner, R. A. (1989) in Perspectives in Biochemistry, Vol. 1, Neurath, H., Ed., American Chemical Society, Washington, DC, pp. 21-29.
40. Balaram, P., Bothner-By, A. A. & Breslow, E. (1973) Biochemistry 12, 4695-4704.
41. Ramachandran, G. N., Ramakrishnan, C. & Sasisekharan, V. (1963) J. Mol. Biol. 7, 95-99.
42. Karle, I. L., Kishore, R., Ragothama, S. & Balaram, P. (1988) J. Am. Chem. Soc. 114, 1958-1963.
43. Kopple, K. D., Parameswaran, K. N. & Yonan, J. P. (1984) J. Am. Chem. Soc. 106, 7212-7217.
44. Koplle, K. D., Kartha, G., Bhandary, K. K. & Romanowska, K. (1985) J. Am. Chem. Soc. 107, 4893-4897.
45. Ragothama, S., Ramakrishnan, C., Balasubramanian, D. & Balaram, P. (1989) Biopolymers 28, 573-588.
46. Galardy, R. E., Craig, L. C. & Printz, M. P. (1974) Biochemistry 13, 1674-1677.
47. Pache, W., Chapman, D. & Hillaby, R. (1972) Biochim. Biophys. Acta 255, 358-364.
48. Rietschel, E. T., Kirikae, T., Schade, U., Mamat, U., Schmidt, G., Loppnow, H., Ulmer, A. J., Zähringer, U., et al. (1994) FASEB J. 8, 217-225.
49. Schindler, M. & Osborn, M. J. (1979) Biochemistry 18, 4425-4430.
50. Peterson, A. A., Fesik, S. W. & McGroarty, E. J. (1987) Antimicrob, Agents Chemother. 31, 230-237.
51. Helander, I. M., Kilpeläinen, I. & Vaara, M. (1994) Mol. Microbiol. 11, 481-487.
52. Ramachandran, L. K., Srinivasa, B. R. & Radhakrishna, G. (1982) in Peptide Antibiotics - Biosynthesis and Function, Kleinhauf, H. & Dohren, H., Eds., Walter de Gruyter, Berlin, pp. 417-433.
53. Danner, R. L., Joiner, K. A., Rubin, M., Patterson, W. H., Jonson, N., Ayers, K. M. & Parrillo, J. E. (1989) Antimicrob. Agents Chemother. 33, 1428-1434.
54. Vogler, V. K., Studer, R. O., Lanz, P., Lergier, W. & Boehni, E. (1965) Helv. Chim. Acta 48, 1161-1177.
55. David, S. A., Balaram, P. & Mathan, V. I. (1993) Med. Microbiol Lett, 2, 42-47.
56. David, S. A., Bechtel, B., Annaiah, C., Mathan, V. I. & Balaram, P. (1994) Biochim. Biophys. Acta 1212, 167-175.
57. HsuChen, C-C. & Feingold, D. S. (1973) Biochemistry 12, 2105-2110.
58. Schröder, G., Brandenburg, K. & Seydel, U. (1992) Biochemistry 31, 631-638.