Efficient transcription obtained by a new procedure of the tRNA-like structure of turnip yellow mosaic virus by a template-dependent and specific viral RNA polymerase

Journal of Virological Methods

Volumn 64, Issue 2, 1997, Pages 181-195

  Deiman, B A L M ^a   Seron K ^b   Jaspars, E M J ^a   Pleij, C W A ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b INSTITUT JACQUES MONOD   (France)

Author keywords

replication; RNA dependent RNA polymerase; tRNA like structure; turnip yellow mosaic virus

Indexed keywords

RNA POLYMERASE; TRANSFER RNA; GLYCEROL; MICROCOCCAL NUCLEASE; RNA DIRECTED RNA POLYMERASE; VIRUS ANTIBODY; VIRUS PROTEIN;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ISOLATION; ENZYME PURIFICATION; ENZYME SPECIFICITY; MOSAIC VIRUS; NONHUMAN; PLANT VIRUS; PRIORITY JOURNAL; RNA STRUCTURE; RNA TRANSCRIPTION; TRANSCRIPTION REGULATION; CHEMISTRY; DENSITY GRADIENT CENTRIFUGATION; DNA TEMPLATE; ENZYMOLOGY; FRACTIONATION; GENETIC TRANSCRIPTION; GENETICS; IMMUNOLOGY; ION EXCHANGE CHROMATOGRAPHY; ISOLATION AND PURIFICATION; METABOLISM; TYMOVIRUS;

ANTIBODIES, VIRAL; CENTRIFUGATION, DENSITY GRADIENT; CHEMICAL FRACTIONATION; CHROMATOGRAPHY, ION EXCHANGE; GLYCEROL; MICROCOCCAL NUCLEASE; RNA REPLICASE; RNA, TRANSFER; SUBSTRATE SPECIFICITY; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC; TYMOVIRUS; VIRAL PROTEINS;

EID: 0031089374     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(96)02166-0     Document Type: Article

References (43)

1. Adhin, M.R., Alblas, J. and van Duin, J. (1990) Secondary structure at the 3′ terminal region of RNA coliphages: comparison with tRNA. Biochim. Biophys. Acta 1050, 104-109.
2. Astier-Manifacier, S. and Cornuet, P. (1971) RNA-dependent RNA polymerase in Chinese cabbage. Biochim. Biophys. Acta 232, 484-493.
3. Boyer, J.C., Drugeon, G., Séron, K., Morch-Devignes, M.D., Agnes, F. and Haenni, A.L. (1993) In vitro transcripts of turnip yellow mosaic virus encompassing a long 3′ extension or produced from a full-length cDNA clone harbouring a 2 kb-long PCR-amplified segment are infectious. Res. Virol. 144, 339-348.
4. Bradford, M.M. (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
5. Bransom, K.L., Weiland, J.J. and Dreher, T.W. (1991) Proteolytic maturation of the 206-kDa nonstructural protein encoded by turnip yellow mosaic virus RNA. Virology 184, 351-358.
6. Bransom, K.L. and Dreher, T.W. (1994) Identification of the essential cysteine and histidine residues of the turnip yellow mosaic virus protease. Virology 198, 148-154.
7. Candresse, T., Mouches, C. and Bové, J.M. (1986) Characterization of the virus encoded subunit of turnip yellow mosaic virus RNA replicase. Virology 152, 322-330.
8. De Graaff, M. and Jaspars, E.M.J. (1994) Plant viral RNA synthesis in cell-free systems. Annu. Rev. Phytopathol. 32, 311-335.
9. Dunn, D.B. and Hitchborn, J.H. (1965) The use of bentonite in the purification of plant viruses. Virology 25, 171-192.
10. Garbouri-Bouzid, R., David, C. and Haenni, A.L. (1991) The 3′ promoter region involved in RNA synthesis directed by turnip yellow mosaic virus genome in vitro. FEBS Lett. 294, 56-58.
11. Giegé, R., Florentz, C. and Dreher, T.W. (1993) The TYMV tRNA-like structure. Biochimie 75, 569-582.
12. Guerrier-Takada, C., Belkum, van A., Pleij, C.W.A. and Altman, S. (1988) Novel reactions of RNase P with a tRNA-like structure in turnip yellow mosaic virus RNA. Cell 53, 267-272.
13. Harlow, E. and Lane, D. (1988) Antibodies: A laboratory Manual. Cold Spring Harbor Laboratory Press. New York, USA.
14. Hayes, R.J. and Buck, K.W. (1990) Complete replication of a eucaryotic virus RNA in vitro by a purified RNA-dependent RNA polymerase. Cell 63, 363-368.
15. Houwing, C.J. and Jaspars, E.M.J. (1986) Coat protein blocks the in vitro transcription of the virion RNAs of alfalfa mosaic virus. FEBS Lett. 209, 284-288.
16. Joshi, R.L., Ravel, J.M. and Haenni, A.L. (1986) Interaction of turnip yellow mosaic virus Val-RNA with eucaryotic elongation factor EF-1α. Search for a function. EMBO J. 5, 1143-1148.
17. Kadaré, G., Rozanov, M.N. and Haenni, A.L. (1995) Expression of the turnip yellow mosaic virus proteinase in Escherichia coli and determination of the cleavage site within the 206 kDa protein. J. Gen. Virol. 76, 2853-2857.
18. Laemmli, U.K. (1970) Cleavage of the structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685.
19. Lafleche, D. and Bové, J.M. (1971) Virus de la mosaïque jaune du navet: site cellulaire de la réplication du RNA viral. Physiol. Vég. 9, 487-503.
20. Litvak, S., Tarrago-Litvak, L. and Chapeville, F. (1973a) TYMV RNA as a substrate of transfer RNA nucleotidyl-transferase. Incorporation of cytidine 5′ monophosphate and determination of short nucleotides sequence at the 3′ end of the RNA. J. Virol. 11, 238-242.
21. Litvak, S., Tarrago, A., Tarrago-Litvak, L. and Allende, J.E. (1973b) Host elongation factor in vitro interaction with TYMV and TMV genome depends on viral tRNA aminoacylation. Nature New Biol. 241, 88-93.
22. Miller, W.A. and Hall, T.C. (1983) Use of micrococcal nuclease in the purification of highly template-dependent RNA-dependent RNA polymerase from brome mosaic virus-infected barley. Virology 125, 236-241.
23. Morch, M.D., Zagorski, W. and Haenni, A.L. (1982) Proteolytic maturation of the turnip yellow mosaic virus polyprotein coded in vitro occurs by internal catalysis. Eur. J. Biochem. 127, 259-265.
24. Morch, M.D., Joshi, R.L., Denial, T.M. and Haenni, A.L. (1987) A new 'sense' RNA approach to block viral RNA replication in vitro. Nucleic Acids Res. 15, 4123-4130.
25. Morch, M.D., Boyer, J.C. and Haenni, A.L. (1988) Overlapping open reading frames revealed by complete nucleotide sequencing of turnip yellow mosaic virus genomic RNA. Nucleic Acids Res. 16, 6157-6173.
26. Morch, M.D., Drugeon, G., Szafranski, P. and Haenni, A.L. (1989) Proteolytic origin of the 150-kilodalton protein encoded by turnip yellow mosaic virus genomic RNA. J. Virol. 63, 5153-5158.
27. Mouchès, C., Bové, C. and Bové, J.M. (1974) Turnip yellow mosaic virus RNA replicase: partial purification of the enzyme from the solubilized enzyme-template complex. Virology 58, 409-423.
28. Mouchès, C., Bové, C., Barreau C. and Bové, J.M. (1976) TYMV RNA replicase: formation of a complex between the purified enzyme and TYMV RNA. Ann. Microbiol. (Inst. Pasteur) 127 A, 75-90.
29. Mouchès, C., Candresse, T. and Bové. J.M. (1984) Turnip yellow mosaic virus RNA-replicase contains host and virus-encoded subunits. Virology 134, 78-90.
30. Pinck, M., Yot, P., Chapeville, F. and Duranton, H. (1970) Enzymatic binding of valine to the 3′ end of TYMV RNA. Nature 226, 954-956.
31. Quadt, R. and Jaspars, E.M.J. (1990) Purification and characterization of brome mosaic virus RNA-dependent RNA polymerase. Virology 178, 189-194.
32. Quadt, R. and Jaspars, E.M.J. (1991) Characterization of cucumber mosaic virus RNA-dependent RNA polymerase. FEBS Lett. 279, 273-276.
33. Quadt, R., Rosdorff, H.J.M., Hunt, T.W. and Jaspars, E.M.J. (1991) Analysis of the protein composition of alfalfa mosaic virus RNA-dependent RNA polymerase. Virology 182, 309-315.
34. Rietveld, K., van Poelgeest, R., Pleij, C.W.A., van Boom, J.H. and Bosch, L. (1982) The tRNA-like structure at the 3′ terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA. Nucleic Acids Res. 10, 1929-1946.
35. Rozanov, M.N., Drugeon, G. and Haenni, A.L. (1995) Papain-like proteinase of turnip yellow mosaic virus: a prototype of a new viral proteinase group. Arch. Virol. 140, 273-288.
36. Sam, T., Eecen, G.J., Pleij, C.W.A., Bosch, L. and Mandel, M. (1991) Thermal stability of turnip yellow mosaic virus RNA: effect of pH and multivalent cations on RNA deaggregation and degradation. Bioch. Biophys. Acta 1129, 64-72.
37. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, NY.
38. Saunders, K. and Kaesberg, P. (1985) Template-dependent RNA polymerase from black beetle virus-infected Drosophila melanogaster cells. Virology 147, 373-381.
39. Schiebel, W., Haas, B., Marinkovi, S., Klanner A. and Sänger, H.L. (1993) RNA-directed RNA polymerase from tomato leaves. Catalytic in vitro properties. J. Biol. Chem. 268, 11858-11867.
40. Tsai, C.H. and Dreher, T.W. (1991) Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently. J. Virol. 65, 3060-3067.
41. Tsai, C.H. and Dreher, T.W. (1992) Second-site suppressor mutations assist in studying the function of the 3′ noncoding region of turnip yellow mosaic virus RNA. J. Virol. 66, 5190-5199.
42. Weiland, J.J. and Dreher, T.W. (1993) Cis-preferential replication of the turnip yellow mosaic virus RNA genome. Proc. Natl. Acad. Sci. U.S.A. 90, 6095-6099.
43. Yot, P., Pinck, M., Haenni, A.L., Duranton, H. and Chapeville, F. (1970) Valine-speciflc tRNA-like structure in turnip yellow mosaic virus RNA. Proc. Natl. Acad. Sci. U.S.A. 67, 1345-1352.