Phylogeny of the genus Rhagoletis (diptera: tephritidae) inferred from DNA sequences of mitochondrial cytochrome oxidase II

Molecular Phylogenetics and Evolution

Volumn 7, Issue 1, 1997, Pages 33-43

  Smith, James J ^a   Bush, Guy L ^a  

^a MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CINGULATA; DIPTERA; RHAGOLETIS; RHAGOLETIS CINGULATA; RHAGOLETIS FAUSTA; RHAGOLETIS POMONELLA; RHAGOLETIS RIBICOLA; RHAGOLETIS SUAVIS; RHAGOLETIS TABELLARIA; TABELLARIA; TEPHRITIDAE;

CYTOCHROME C OXIDASE; LEUCINE TRANSFER RNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHEMISTRY; CLASSIFICATION; CONFORMATION; FLY; GENETIC VARIABILITY; GENETICS; MOLECULAR GENETICS; PHYLOGENY;

ANIMALS; DIPTERA; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PHYLOGENY; RNA, TRANSFER, LEU; VARIATION (GENETICS);

EID: 0031066822     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1996.0374     Document Type: Article

References (49)

1. Avise, J. C. (1994). "Molecular Markers, Natural History and Evolution," Chapman & Hall, New York.
2. Beckenbach, A. T., Wei, Y. W., and Liu, H. (1993). Relationships in the Drosophila obscura species group, inferred from mitochondrial cytochrome oxidase II sequences. Mol. Biol. Evol. 10: 619-634.
3. Bender, W., Spierer, P., and Hogness, D. (1983). Chromosome walking and jumping to isolate DNA from the Ace and Rosy loci and the bithorax complex in Drosophila melanogaster. J. Mol. Biol. 168: 17-33.
4. Berlocher, S. H. (1981). A comparison of molecular and morphological data, and phenetic and cladistic methods, in the estimation of phylogeny in Rhagoletis (Diptera: Tephritidae). In "Application of Genetics and Cytology in Insect Systematics and Evolution" (M. W. Stock, Ed.), Univ. of Idaho, Moscow.
5. Berlocher, S. H. (1993). Gametic disequilibrium between allozyme loci and sex chromosomes in the genus Rhagoletis. J. Hered. 84: 431-437.
6. Berlocher, S. H., and Bush, G. L. (1982). An electrophoretic analysis of Rhagoletis (Diptera: Tephritidae) phylogeny. Syst. Zool. 31: 136-155.
7. Berlocher, S. H., McPheron, B. A., Feder, J. L., and Bush, G. L. (1993). Genetic differentiation at allozyme loci in the Rhagoletis pomonella (Diptera: Tephritidae) species complex. Ann. Ent. Soc. Amer. 86: 716-727.
8. Bogdanowicz, S. M., Waller, W. E., Bell, J., Odell, T. M., and Harrison, R. G. (1993). Asian Gypsy Moths (Lepidoptera: Lymantriidae) in North America: Evidence from molecular data. Ann. Entomol. Soc. Am. 86: 710-715.
9. Bremer, K. (1994). Branch support and tree stability. Cladistics 10: 295-304.
10. Brower, A. V. Z. (1994a). Phylogeny of Heliconius butterflies inferred from mitochondrial DNA sequences (Lepidoptera: Nymphalidae). Mol. Phylogenet. Evol. 3: 159-174.
11. Brower, A. V. Z. (1994b). Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl. Acad. Sci. USA 91: 6491-6495.
12. Brown, J. M., Pellmyr, O., Thompson, J. N., and Harrison, R. G. (1994). Phylogeny of Greya (Lepidoptera: Prodoxidae) based on nucleotide sequence variation in mitochondrial DNA cytochrome oxidase I and II: Congruence with morphology. Mol. Biol. Evol. 11: 128-141.
13. Bush, G. L. (1966). The taxonomy, cytology, and evolution of the genus Rhagoletis in North America (Diptera, Tephritidae). Bull. Mus. Comp. Zool. 134: 431-562.
14. Bush, G. L. (1992). Host race formation and sympatric speciation in Rhagoletis fruit flies (Diptera: Tephritidae). Psyche 99: 335-357.
15. Carpenter, J. M. (1988). Choosing among multiple equally parsimonious cladograms. Cladistics 4: 291-296.
16. Clary, D. O., and Wolstenholme, D. R. (1985). The mitochondrial DNA molecule of Drosophila yakuba: Nucleotide sequence, gene organization, and genetic code. J. Mol. Evol. 22: 252-271.
17. Doyle, J. J. (1993). DNA, phylogeny, and the flowering of plant systematics. Bioscience 43: 380-389.
18. Farris, J. S. (1969). A successive approximations approach to character weighting. Syst. Zool. 18: 374-385.
19. Farris, J. S. (1989). The retention index and the rescaled consistency index. Cladistics 5: 417-419.
20. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the boot strap Evolution 39: 783-791.
21. Foote, R. H. (1981). The Genus Rhagoletis Loew South of the United States (Diptera: Tephritidae), USDA Technical Bulletin, Number 1607.
22. Foote, R. H., Blanc, F. L., and Norrbom, A. L. (1993). "Handbook of the Fruit Flies (Diptera: Tephritidae) of America North of Mexico," Cornell Univ. Press, Ithaca, NY.
23. Han, H.-Y., and McPheron, B. A. (1997). Molecular phylogenetic study of Tephritidae (Insecta: Diptera) using partial sequences of the mitochondrial 16S ribosomal DNA., Mol. Phylogenet. Evol. 7, 17-32.
24. Harrison, R. G. (1989). Animal mitochondrial DNA as a genetic marker in population and evolutionary biology. Trends Ecol. Evol. 4:6-11.
25. Harrison, R. G. (1991). Molecular changes at speciation. Annu. Rev. Ecol. Syst. 22: 281-308.
26. Hillis, D. M. (1987). Molecular versus morphological approaches to systematics. Annu. Rev. Ecol. Syst. 18: 23-42.
27. Hillis, D. M., and Bull, J. J. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42: 182-192.
28. Holton, T. A., and Graham, M. W. (1991). A simple and efficient method for direct cloning of PCR products using ddT-tailed vectors. Nucleic Acids Res. 19: 1156.
29. Jenkins, J. (1996). "Systematics Studies of Rhagoletis and Related Genera (Diptera: Tephritidae)," Ph.D. dissertation, Michigan State University.
30. Jermy, T. (1961). Eine neue Rhagoletis-art (Diptera: Tephritidae) aus den fruchten von Berberis vulgaris L. Acta. Zool. Acad. Sci. Hungarica 8: 133-137.
31. Jukes, T. H., and Cantor, C. R. (1969). Evolution of protein molecules. In "Mammalian Protein Metabolism" (H. N. Munro, Ed.), pp. 21-26, Academic Press, New York.
32. Kandybina, M. N. (1972). Fruit flies (Diptera, Tephrtidae) of the Mongolian People's Republic. Ent. Rev. 51: 540-545.
33. Kumar, S., Tamura, K., and Nei, M. (1993). "MEGA: Molecular Evolutionary Genetics Analysis, version 1.01," The Pennsylvania State University, University Park, PA 16802.
34. Liu, H., and Beckenbach, A. T. (1992). Evolution of the mitochondrial cytochrome oxidase II gene among 10 orders of insects. Mol. Phylogenet. Evol. 1: 41-52.
35. Maddison, W. (1995). Phylogenetic histories within and among species. In "Experimental and Molecular Approaches to Plant Biosystematics" (P. C. Hoch and A. G. Stephenson, Eds.), Monogr. Syst. Bot. Missouri Bot. Gard. Vol. 53, pp. 273-287, Missouri Botanical Garden, St. Louis.
36. Maddison, W. P., and Maddison, D. R. (1992). "MacClade: Analysis of Phylogeny and Character Evolution, Version 3.0." Sinauer Associates, Sunderland, MA.
37. McPheron, B. A., and Han, H.-Y. (1997). Phylogenetic analysis of North American Rhagoletis (Diptera: Tephritidae) and related genera using mitochondrial DNA sequence data. mol. Phylogenet. Evol. 7, 1-16.
38. Ming, Y. (1995). "Characterization of the Ribosomal DNA of the Genus Rhagoletis (Diptera: Tephritidae)," Ph.D. dissertation, Michigan State University.
39. Miyamoto, M. M., and Fitch, W. M. (1995). Testing species phylogenies and phylogenetic methods with congruence. Syst. Biol. 44: 64-76.
40. Norrbom, A. L. (1989). The status of Urophora acuticornis and U. sabroskyi (Diptera: Tephritidae). Ent. News 100: 59-66.
41. Rohdendorf, B. B. (1961). Palaearctic fruit-flies (Diptera, Tripetidae) of the genus Rhagoletis Loew and closely related genera. Ent. Rev. 40: 89-102.
42. Saraste, M. (1990). Structural features of cytochrome oxidase. Q. Rev. Biophys. 23: 331-366.
43. Simon, C., McIntosh, C., and Deniega, J. (1993). Standard restriction fragment length analysis of the mitochondrial genome is not sensitive enough for phylogenetic analysis or identification of 17-year periodical cicada broods (Hemiptera: Cicadidae): The potential for a new technique. Ann. Ent. Soc. Am. 86: 228-238.
44. Simon, C., Frati, F, Beckenbach, A., Crespi, B., Liu, H., and Flook, P. (1994). Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87: 651-701.
45. Sperling, F. A. H., and Hickey, D. A. (1994). Mitochondrial DNA sequence variation in the Spruce Budworm species complex (Choristoneura: Lepidoptera). Mol. Biol. Evol. 11: 656-665.
46. Swofford, D. L. (1991). When are phylogeny estimates from molecular and morphological data incongruent? In "Phylogenetic Analysis of DNA Sequences" (M. M. Miyamoto and J. Cracraft, Eds.), pp. 295-333, Oxford Univ. Press, Oxford.
47. Swofford, D. L. (1993). "PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1," Computer program distributed by the Illinois Natural History Survey. Champaign, IL.
48. Versalovic, J., Koeuth, T, and Lupski, J. R. (1991). Distribution of repetitive DNA sequences in Eubacteria and application of finger-printing of bacterial genomes. Nucleic Acid Res. 19: 6823-6831.
49. Willis, L. G., Winston, M. L., and Honda, B. M. (1992). Phylogenetic relationships in the Honeybee (Genus Apis) as determined by the sequence of the cytochrome oxidase II region of mitochondrial DNA. Mol. Phylogenet. Evol. 1: 169-178.