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Volumn 22, Issue 2, 1997, Pages 212-216

Ku autoantigen is a potential major cause of nonspecific bands in electrophoretic mobility shift assays

Author keywords

[No Author keywords available]

Indexed keywords

AUTOANTIGEN; DNA FRAGMENT; PROTEIN KINASE;

EID: 0031059428     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/97222bm02     Document Type: Article
Times cited : (22)

References (30)
  • 1
    • 0025730640 scopus 로고
    • Rapid micropreparation technique for extraction of DNA binding proteins from limiting numbers of mammalian cells
    • Andrews, N.C. and D.V. Faller. 1991. Rapid micropreparation technique for extraction of DNA binding proteins from limiting numbers of mammalian cells. Nucleic Acids Res. 19:2499.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 2499
    • Andrews, N.C.1    Faller, D.V.2
  • 2
    • 0028584351 scopus 로고
    • A Drosophila protein homologous to the human p70 Ku autoimmune antigen interacts with the P transposable element inverted repeats
    • Beall, E.L., A. Admon and D.C. Rio. 1994. A Drosophila protein homologous to the human p70 Ku autoimmune antigen interacts with the P transposable element inverted repeats. Proc. Natl. Acad. Sci. USA 97:12681-12685.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 12681-12685
    • Beall, E.L.1    Admon, A.2    Rio, D.C.3
  • 3
    • 0029843408 scopus 로고    scopus 로고
    • Identification of a Saccharomyces cerevisiae Ku80 homologue: Roles in DNA double strand break rejoining and in telomeric maintenance
    • Boulton, S.J. and S.P. Jackson. 1996. Identification of a Saccharomyces cerevisiae Ku80 homologue: roles in DNA double strand break rejoining and in telomeric maintenance. Nucleic Acids Res. 24:4639-4648.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4639-4648
    • Boulton, S.J.1    Jackson, S.P.2
  • 4
    • 0026346185 scopus 로고
    • Gel retardation
    • Carey, J. 1991. Gel retardation. Methods Enzymol. 208:103-117.
    • (1991) Methods Enzymol. , vol.208 , pp. 103-117
    • Carey, J.1
  • 5
    • 0000435320 scopus 로고
    • Mobility shift DNA-binding assay using gel electrophoresis, Unit 12.2
    • F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith and K. Struhl (Eds.), John Wiley & Sons, New York
    • Chodosh, L.A. 1995. Mobility shift DNA-binding assay using gel electrophoresis, Unit 12.2. In F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith and K. Struhl (Eds.), Current Protocols in Molecular Biology, Vol. 2. John Wiley & Sons, New York.
    • (1995) Current Protocols in Molecular Biology , vol.2
    • Chodosh, L.A.1
  • 6
    • 0025971439 scopus 로고
    • Order of probe and nuclear protein extract addition can determine specificity of protein-DNA complexes in tested mobility shift assays
    • Demczuk, S., M. Donovan, G. Franklin and R. Ohlsson. 1991. Order of probe and nuclear protein extract addition can determine specificity of protein-DNA complexes in tested mobility shift assays. Nucleic Acids Res. 19:677-678.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 677-678
    • Demczuk, S.1    Donovan, M.2    Franklin, G.3    Ohlsson, R.4
  • 7
    • 0024356877 scopus 로고
    • HeLa nuclear protein recognizing DNA termini and translocating on DNa forming a regular DNA-multimeric protein complex
    • de Vries, E., W. van Driel, W.G. Bergsma, A.C. Arnberg and P.C. van der Vliet. 1989. HeLa nuclear protein recognizing DNA termini and translocating on DNA forming a regular DNA-multimeric protein complex. J. Mol. Biol. 208:65-78.
    • (1989) J. Mol. Biol. , vol.208 , pp. 65-78
    • De Vries, E.1    Van Driel, W.2    Bergsma, W.G.3    Arnberg, A.C.4    Van Der Vliet, P.C.5
  • 8
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J.D., R.M. Lebovitz and R.G. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1475-1489.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 9
    • 0027156140 scopus 로고    scopus 로고
    • EBP-80, a transcription factor closely resembling the human autoantigen Ku, recognizes single- to double-strand transitions in DNA
    • Falzon, M., J.W. Fewell and E.L. Kuff. 1996. EBP-80, a transcription factor closely resembling the human autoantigen Ku, recognizes single-to double-strand transitions in DNA. J. Biol. Chem. 268:10546-10552.
    • (1996) J. Biol. Chem. , vol.268 , pp. 10546-10552
    • Falzon, M.1    Fewell, J.W.2    Kuff, E.L.3
  • 10
    • 0027288231 scopus 로고
    • A putative homologue of the human autoantigen Ku from Saccharomyces cerevisiae
    • Feldmann, H. and E.L. Winnacker. 1993. A putative homologue of the human autoantigen Ku from Saccharomyces cerevisiae. J. Biol. Chem. 268:12895-12900.
    • (1993) J. Biol. Chem. , vol.268 , pp. 12895-12900
    • Feldmann, H.1    Winnacker, E.L.2
  • 11
    • 0019878376 scopus 로고
    • Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
    • .Fried, M. and D.M. Crothers. 1981. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis. Nucleic Acids Res. 9:6505-6525.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 6505-6525
    • Fried, M.1    Crothers, D.M.2
  • 12
    • 0019877067 scopus 로고
    • A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
    • Garner, M.M. and A. Revzin. 1981. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system. Nucleic-Acids Res. 9:3047-3060.
    • (1981) Nucleic-Acids Res. , vol.9 , pp. 3047-3060
    • Garner, M.M.1    Revzin, A.2
  • 13
    • 0028898262 scopus 로고
    • Purification of the sequence-specific transcription factor CTCBF, involved in the control of human collagen IV genes: Subunits with homology to Ku antigen
    • Genersch, E., C. Eckerskorn, F. Lottspeich, C. Herzog, K. Kühn and E. Pöschl. 1995. Purification of the sequence-specific transcription factor CTCBF, involved in the control of human collagen IV genes: subunits with homology to Ku antigen. EMBO J. 14:791-800.
    • (1995) EMBO J. , vol.14 , pp. 791-800
    • Genersch, E.1    Eckerskorn, C.2    Lottspeich, F.3    Herzog, C.4    Kühn, K.5    Pöschl, E.6
  • 14
    • 0029988716 scopus 로고    scopus 로고
    • Sequence-specific DNA binding by Ku autoantigen and its effects on transcription
    • Griffin, W., H. Torrance, D.J. Rodda, G.G. Préfontaine, L. Pope and R.J.G. Haché. 1996. Sequence-specific DNA binding by Ku autoantigen and its effects on transcription. Nature 380:265-268.
    • (1996) Nature , vol.380 , pp. 265-268
    • Griffin, W.1    Torrance, H.2    Rodda, D.J.3    Préfontaine, G.G.4    Pope, L.5    Haché, R.J.G.6
  • 15
    • 0026474531 scopus 로고
    • Cloning by recognition site screening of two novel GT box binding proteins: A family of Sp1 related genes
    • Hagen, G., S. Müller, M. Beato and G. Suske. 1992. Cloning by recognition site screening of two novel GT box binding proteins: a family of Sp1 related genes. Nucleic-Acids Res. 20:5519-5525.
    • (1992) Nucleic-Acids Res. , vol.20 , pp. 5519-5525
    • Hagen, G.1    Müller, S.2    Beato, M.3    Suske, G.4
  • 16
    • 0028791446 scopus 로고
    • DNA double-strand break repair and V(D)J recombination: Involvement of DNA-PK
    • Jackson, S.P. and P.A. Jeggo. 1995. DNA double-strand break repair and V(D)J recombination: involvement of DNA-PK. Trends Biochem. Sci. 20:412-415.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 412-415
    • Jackson, S.P.1    Jeggo, P.A.2
  • 17
    • 0028301440 scopus 로고
    • Yolk protein factor 1 is a Drosophila homolog of Ku, the DNA-binding subunit of a DNA-dependent protein kinase from humans
    • Jacoby, D.B. and P.C. Wensink. 1994. Yolk protein factor 1 is a Drosophila homolog of Ku, the DNA-binding subunit of a DNA-dependent protein kinase from humans. J. Biol. Chem. 269:11484-11491.
    • (1994) J. Biol. Chem. , vol.269 , pp. 11484-11491
    • Jacoby, D.B.1    Wensink, P.C.2
  • 18
    • 0026349947 scopus 로고
    • Purification of sequence-specific binding proteins by DNA affinity chromatography
    • Kadonaga, J.T. 1991. Purification of sequence-specific binding proteins by DNA affinity chromatography. Methods Enzymol. 208:10-23.
    • (1991) Methods Enzymol. , vol.208 , pp. 10-23
    • Kadonaga, J.T.1
  • 19
    • 0024999553 scopus 로고
    • Purification and characterization of proximal sequence element-binding protein 1, a transcription activating protein related to Ku and TREF that binds the proximal sequence element of the human U1 promoter
    • Knuth, M.W., S.I. Gunderson, N.E. Thompson, L.A. Strasheim and R.R. Burgess. 1990. Purification and characterization of proximal sequence element-binding protein 1, a transcription activating protein related to Ku and TREF that binds the proximal sequence element of the human U1 promoter. J. Biol. Chem. 265:17911-17920.
    • (1990) J. Biol. Chem. , vol.265 , pp. 17911-17920
    • Knuth, M.W.1    Gunderson, S.I.2    Thompson, N.E.3    Strasheim, L.A.4    Burgess, R.R.5
  • 20
    • 0025852228 scopus 로고
    • Purification and characterization of Ku-2, an octamer-binding protein related to the autoantigen Ku
    • May, G., C. Sutton and H. Gould. 1991. Purification and characterization of Ku-2, an octamer-binding protein related to the autoantigen Ku. J. Biol. Chem. 266:3052-3059.
    • (1991) J. Biol. Chem. , vol.266 , pp. 3052-3059
    • May, G.1    Sutton, C.2    Gould, H.3
  • 21
    • 0029888569 scopus 로고    scopus 로고
    • The DNA-dependent protein kinase: A matter of life and (cell) death
    • McConnell, K. and W.S. Dynan. 1996. The DNA-dependent protein kinase: a matter of life and (cell) death. Curr. Opin. Cell Biol. 8:325-330.
    • (1996) Curr. Opin. Cell Biol. , vol.8 , pp. 325-330
    • McConnell, K.1    Dynan, W.S.2
  • 22
    • 0019374013 scopus 로고
    • Characterization of a high molecular weight acidic nuclear protein recognized by autoantibodies in sera from patients with polymyositis-scleroderma overlap
    • Mimori, T., M. Akizuki, H. Yamagata, S. Inada, S. Yoshida and M. Homma. 1981. Characterization of a high molecular weight acidic nuclear protein recognized by autoantibodies in sera from patients with polymyositis-scleroderma overlap. J. Clin. Invest. 65:611-620.
    • (1981) J. Clin. Invest. , vol.65 , pp. 611-620
    • Mimori, T.1    Akizuki, M.2    Yamagata, H.3    Inada, S.4    Yoshida, S.5    Homma, M.6
  • 23
    • 0024547021 scopus 로고
    • Purification and properties of yolk protein factor I, a sequence-specific DNA-binding protein from Drosophila melanogaster
    • Mitsis, P.G. and P.C. Wensink. 1989. Purification and properties of yolk protein factor I, a sequence-specific DNA-binding protein from Drosophila melanogaster. J. Biol. Chem. 264:5195-5202.
    • (1989) J. Biol. Chem. , vol.264 , pp. 5195-5202
    • Mitsis, P.G.1    Wensink, P.C.2
  • 24
    • 0026045833 scopus 로고
    • Analysis of the mechanism of interaction of simian Ku protein with DNA
    • Paillard, S. and F. Strauss. 1991. Analysis of the mechanism of interaction of simian Ku protein with DNA. Nucleic Acids Res. 19:5619-5624.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 5619-5624
    • Paillard, S.1    Strauss, F.2
  • 25
    • 0025784509 scopus 로고
    • Autoimmune antigen Ku is enriched on oligonucleotide columns distinct from those containing the octamer binding protein DNA consensus sequence
    • Quinn, J.P. and A.R. Farina. 1991. Autoimmune antigen Ku is enriched on oligonucleotide columns distinct from those containing the octamer binding protein DNA consensus sequence. FEBS Lett. 286:225-228.
    • (1991) FEBS Lett. , vol.286 , pp. 225-228
    • Quinn, J.P.1    Farina, A.R.2
  • 26
    • 0024755751 scopus 로고
    • Nuclear proteins TREF1 and TREF2 bind to the transcriptional control element of the transferrin receptor gene and appear to be associated as a heterodimer
    • Roberts, M.R., W.K. Miskimins and F.H. Ruddle. 1989. Nuclear proteins TREF1 and TREF2 bind to the transcriptional control element of the transferrin receptor gene and appear to be associated as a heterodimer. Cell Regul. 1:151-164.
    • (1989) Cell Regul. , vol.1 , pp. 151-164
    • Roberts, M.R.1    Miskimins, W.K.2    Ruddle, F.H.3
  • 27
    • 0025943945 scopus 로고
    • Transcriptional repression by YY1, a human GLI-Krüppel-related protein, and relief of repression by adenovirus E1a protein
    • Shi, Y., E. Seto, L.-S. Chang and T. Shenk. 1991. Transcriptional repression by YY1, a human GLI-Krüppel-related protein, and relief of repression by adenovirus E1A protein. Cell 67:377-388.
    • (1991) Cell , vol.67 , pp. 377-388
    • Shi, Y.1    Seto, E.2    Chang, L.-S.3    Shenk, T.4
  • 28
    • 0025785232 scopus 로고
    • Identification of transcription factors required for the expression of mammalian U6 genes in vitro
    • Waldschmidt, R., I. Wanandi and K.H. Seifart. 1991. Identification of transcription factors required for the expression of mammalian U6 genes in vitro. EMBO J. 10:2595-2603.
    • (1991) EMBO J. , vol.10 , pp. 2595-2603
    • Waldschmidt, R.1    Wanandi, I.2    Seifart, K.H.3
  • 29
    • 0028090278 scopus 로고
    • Assembly and DNA binding of recombinant Ku (p70/p80) autoantigen defined by a novel monoclonal antibody specific for p70/p80 heterodimers
    • Wang, J., M. Satoh, A. Pierani, J. Schmitt, C.H. Chou, H.G. Stunnenberg, R.G. Roeder and W.H. Reeves. 1994. Assembly and DNA binding of recombinant Ku (p70/p80) autoantigen defined by a novel monoclonal antibody specific for p70/p80 heterodimers. J. Cell Sci. 107:3223-3233.
    • (1994) J. Cell Sci. , vol.107 , pp. 3223-3233
    • Wang, J.1    Satoh, M.2    Pierani, A.3    Schmitt, J.4    Chou, C.H.5    Stunnenberg, H.G.6    Roeder, R.G.7    Reeves, W.H.8
  • 30
    • 0028936708 scopus 로고
    • Proximal sequence element-binding transcription factor (PTF) is a multisubunit complex required for transcription of both RNA polymerase II- and RNA polymerase III-dependent small nuclear RNA genes
    • Yoon, J.-B., S. Murphy, L. Bai, Z. Wang and R.G. Roeder. 1995. Proximal sequence element-binding transcription factor (PTF) is a multisubunit complex required for transcription of both RNA polymerase II- and RNA polymerase III-dependent small nuclear RNA genes. Mol. Cell. Biol. 15:2019-2027.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 2019-2027
    • Yoon, J.-B.1    Murphy, S.2    Bai, L.3    Wang, Z.4    Roeder, R.G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.