메뉴 건너뛰기




Volumn 64, Issue 1, 1997, Pages 11-18

Rapid and sensitive genotyping of hepatitis C virus by single-strand conformation polymorphism

Author keywords

genotyping; hepatitis C; SSCP

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOTYPE; HEPATITIS C VIRUS; HUMAN; HUMAN TISSUE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SCREENING; VIRUS CHARACTERIZATION;

EID: 0031056753     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-0934(96)02134-9     Document Type: Article
Times cited : (18)

References (36)
  • 1
    • 0026674719 scopus 로고
    • Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomie RNAs
    • Brown, E.A., Zhang, H., Ping, L.-H. and Lemon, S.M. (1992) Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomie RNAs. Nucleic Acids Res. 20, 5041-5045.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5041-5045
    • Brown, E.A.1    Zhang, H.2    Ping, L.-H.3    Lemon, S.M.4
  • 2
    • 0028945033 scopus 로고
    • Genetic heterogeneity of hepatitis C virus: Quasispecies and genotypes
    • Bukh, J., Miller, R.H. and Pureell, R.H. (1995) Genetic heterogeneity of hepatitis C virus: Quasispecies and genotypes. Semin. Liver Dis. 15, 41-63.
    • (1995) Semin. Liver Dis. , vol.15 , pp. 41-63
    • Bukh, J.1    Miller, R.H.2    Pureell, R.H.3
  • 3
    • 0026652601 scopus 로고
    • Comparison of several PCR procedures for detection of serum HCV-RNA using different regions of the HCV genome
    • Castillo, I., Bartolome, J., Quiroga, J.A. and Carreno, V. (1992) Comparison of several PCR procedures for detection of serum HCV-RNA using different regions of the HCV genome. J. Virol. Methods 38, 71-80.
    • (1992) J. Virol. Methods , vol.38 , pp. 71-80
    • Castillo, I.1    Bartolome, J.2    Quiroga, J.A.3    Carreno, V.4
  • 5
    • 0027448735 scopus 로고
    • An improved method for rapid screening of DNA mutations by nonradioactive single-stranded conformation polymorphism procedure
    • Chaubert, P., Bautista, D. and Benhattar, J. (1993) An improved method for rapid screening of DNA mutations by nonradioactive single-stranded conformation polymorphism procedure. Biotechniques 15, 586.
    • (1993) Biotechniques , vol.15 , pp. 586
    • Chaubert, P.1    Bautista, D.2    Benhattar, J.3
  • 6
    • 0023277545 scopus 로고
    • Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
    • Chomezynski, P. and Saeehi, N. (1987) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159.
    • (1987) Anal. Biochem. , vol.162 , pp. 156-159
    • Chomezynski, P.1    Saeehi, N.2
  • 7
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from blood-borne non-A, non-B viral hepatitis genome
    • Choo, Q.-L., Kuo, G., Weiner, A.J., Overby, L.R., Bradley, D.W. and Houghton, M. (1989) Isolation of a cDNA clone derived from blood-borne non-A, non-B viral hepatitis genome. Science 244, 359-362.
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.-L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 12
    • 0029047006 scopus 로고
    • Rapid genotyping of hepatitis C virus by dideoxy fingerprinting
    • Fox, S.A., Lareu, R.R. and Swanson, N.R. (1995) Rapid genotyping of hepatitis C virus by dideoxy fingerprinting. J. Virol. Methods 53, 1-9.
    • (1995) J. Virol. Methods , vol.53 , pp. 1-9
    • Fox, S.A.1    Lareu, R.R.2    Swanson, N.R.3
  • 13
    • 0027487271 scopus 로고
    • Optimisation of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations
    • Glavac, D. and Dean, M. (1993) Optimisation of the single-strand conformation polymorphism (SSCP) technique for detection of point mutations. Hum. Mutat. 2, 404-414.
    • (1993) Hum. Mutat. , vol.2 , pp. 404-414
    • Glavac, D.1    Dean, M.2
  • 14
    • 0027434131 scopus 로고
    • How sensitive is PCR-SSCP?
    • Hayashi, K. and Yandell, D.W. (1993) How sensitive is PCR-SSCP? Hum. Mutat. 2, 338-346.
    • (1993) Hum. Mutat. , vol.2 , pp. 338-346
    • Hayashi, K.1    Yandell, D.W.2
  • 15
    • 0028010470 scopus 로고
    • Analysis of the core and El envelope region sequences of a novel variant of hepatitis C virus obtained in Indonesia
    • Hotta, H., Doi, H., Hayashi, T., Purwanta, M., Soemarto, W., Mizokami, M., Ohba, K. and Homma, M. (1994) Analysis of the core and El envelope region sequences of a novel variant of hepatitis C virus obtained in Indonesia. Arch. Virol. 136, 53-62.
    • (1994) Arch. Virol. , vol.136 , pp. 53-62
    • Hotta, H.1    Doi, H.2    Hayashi, T.3    Purwanta, M.4    Soemarto, W.5    Mizokami, M.6    Ohba, K.7    Homma, M.8
  • 16
    • 0025787597 scopus 로고
    • Genomic structure of the human prototype strain H of hepatitis C virus: Comparison with American and Japanese isolates
    • Inchauspe, G., Zebedec, S., Lee, D.-H., Sugitani, M., Nasoff, M. and Prince, A.M. (1991) Genomic structure of the human prototype strain H of hepatitis C virus: comparison with American and Japanese isolates. Proc. Natl. Acad. Sci. USA. 88, 10292-10296.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 10292-10296
    • Inchauspe, G.1    Zebedee, S.2    Lee, D.-H.3    Sugitani, M.4    Nasoff, M.5    Prince, A.M.6
  • 17
    • 0026777128 scopus 로고
    • HCV genotypes in chronic hepatitis C and response to interferon
    • Kanai, K., Kato, M. and Okamoto, H. (1992) HCV genotypes in chronic hepatitis C and response to interferon. Lancet 339, 1543.
    • (1992) Lancet , vol.339 , pp. 1543
    • Kanai, K.1    Kato, M.2    Okamoto, H.3
  • 21
    • 0025249362 scopus 로고
    • Hepatitis C virus shares amino acid sequence similarity with pestiviruses and flaviviruses as well as members of two plant virus super-groups
    • Miller, R.H. and Purcell, R.H. (1990) Hepatitis C virus shares amino acid sequence similarity with pestiviruses and flaviviruses as well as members of two plant virus super-groups. Proc. Natl. Acad. Sci. USA. 87, 2057-2061.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 2057-2061
    • Miller, R.H.1    Purcell, R.H.2
  • 22
    • 0025742836 scopus 로고
    • Typing of hepatitis C virus genomes by restriction fragment length polymorphism
    • Nakao, T., Enomoto, N., Takada, N., Takada, A. and Date, T. (1991) Typing of hepatitis C virus genomes by restriction fragment length polymorphism. J. Gen. Virol. 72, 2105-2112.
    • (1991) J. Gen. Virol. , vol.72 , pp. 2105-2112
    • Nakao, T.1    Enomoto, N.2    Takada, N.3    Takada, A.4    Date, T.5
  • 23
    • 0025933437 scopus 로고
    • Nucleotide sequence of the genomic RNA of hepatitis C virus isolated from a human carrier: Comparison with reported isolates for conserved and divergent regions
    • Okamoto, H., Okada, S., Sugiyama, Y., Kurai, K., Iizuka, H., Machida, A., Miyakawa, Y. and Mayumi, M. (1991) Nucleotide sequence of the genomic RNA of hepatitis C virus isolated from a human carrier: comparison with reported isolates for conserved and divergent regions. J. Gen. Virol. 72, 2697-2704.
    • (1991) J. Gen. Virol. , vol.72 , pp. 2697-2704
    • Okamoto, H.1    Okada, S.2    Sugiyama, Y.3    Kurai, K.4    Iizuka, H.5    Machida, A.6    Miyakawa, Y.7    Mayumi, M.8
  • 24
    • 0026563204 scopus 로고
    • Typing hepatitis C virus by polymerase chain reaction with type-specific primers: Application to clinical surveys and tracing infectious sources
    • Okamoto, H., Sugiyama, Y., Okada, S., Kurai, K., Akahane, Y., Sugai, Y., Tanaka, T., Sato, K., Tsuda, F., Miyakawa, Y. and Mayumi, M. (1992a) Typing hepatitis C virus by polymerase chain reaction with type-specific primers: application to clinical surveys and tracing infectious sources. J. Gen. Virol. 73, 673-679.
    • (1992) J. Gen. Virol. , vol.73 , pp. 673-679
    • Okamoto, H.1    Sugiyama, Y.2    Okada, S.3    Kurai, K.4    Akahane, Y.5    Sugai, Y.6    Tanaka, T.7    Sato, K.8    Tsuda, F.9    Miyakawa, Y.10    Mayumi, M.11
  • 25
    • 0026751054 scopus 로고
    • Full-length sequence of a hepatitis C virus genome having poor homology to reported isolates: Comparative study of four distinct genotypes
    • Okamoto, H., Kurai, K., Okada, S.-I., Yamamoto, K., Iizuka, H., Tanaka, T., Fukuda, S., Tsuda, F. and Mishiro, S. (1992b) Full-length sequence of a hepatitis C virus genome having poor homology to reported isolates: comparative study of four distinct genotypes. Virology 188, 331-341.
    • (1992) Virology , vol.188 , pp. 331-341
    • Okamoto, H.1    Kurai, K.2    Okada, S.-I.3    Yamamoto, K.4    Iizuka, H.5    Tanaka, T.6    Fukuda, S.7    Tsuda, F.8    Mishiro, S.9
  • 26
    • 0024756969 scopus 로고
    • Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction
    • Orita, M., Suzuki, Y., Sekiya, T. and Hayashi, K. (1989) Rapid and sensitive detection of point mutations and DNA polymorphisms using the polymerase chain reaction. Genomics 5, 874-879.
    • (1989) Genomics , vol.5 , pp. 874-879
    • Orita, M.1    Suzuki, Y.2    Sekiya, T.3    Hayashi, K.4
  • 27
    • 0028216599 scopus 로고
    • Entire nucleotide sequence and characterisation of a hepatitis C virus of genotype V/3a
    • Sakamoto, M., Akahane, Y., Tsuda, F., Tanaka, T., Woodfield, D.G. and Okamoto, H. (1994) Entire nucleotide sequence and characterisation of a hepatitis C virus of genotype V/3a. J. Gen. Virol. 75, 1761-1768.
    • (1994) J. Gen. Virol. , vol.75 , pp. 1761-1768
    • Sakamoto, M.1    Akahane, Y.2    Tsuda, F.3    Tanaka, T.4    Woodfield, D.G.5    Okamoto, H.6
  • 28
  • 29
    • 0027193025 scopus 로고
    • Mapping of serotype-specific, immunodominant epitopes in the NS-4 region of hepatitis C virus (HCV): Use of type-specific peptides to serologically differentiate infections with HCV type 1, 2 and 3
    • Simmonds, P., Rose, K.A., Graham, S., Chan, S.-W., McOmish, F., Dow, B.C., Follett, E.A.C., Yap, P.L. and Marsden, H. (1993b) Mapping of serotype-specific, immunodominant epitopes in the NS-4 region of hepatitis C virus (HCV): Use of type-specific peptides to serologically differentiate infections with HCV type 1, 2 and 3. J. Clin. Microbiol. 31, 1493-1503.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 1493-1503
    • Simmonds, P.1    Rose, K.A.2    Graham, S.3    Chan, S.-W.4    McOmish, F.5    Dow, B.C.6    Follett, E.A.C.7    Yap, P.L.8    Marsden, H.9
  • 30
    • 0029027606 scopus 로고
    • Variation of the hepatitis C virus 5′ non-coding region: Implications for secondary structure, virus detection and typing
    • Smith, D.B., Mellor, J., Jarvis, L.M., Davidson, F., Kolberg, J., Urdea, M., Yap, P.-L., Simmonds, P. and The International HCV Collaborative Study Group (1995) Variation of the hepatitis C virus 5′ non-coding region: implications for secondary structure, virus detection and typing. J. Gen. Virol. 76, 1749-1761.
    • (1995) J. Gen. Virol. , vol.76 , pp. 1749-1761
    • Smith, D.B.1    Mellor, J.2    Jarvis, L.M.3    Davidson, F.4    Kolberg, J.5    Urdea, M.6    Yap, P.-L.7    Simmonds, P.8
  • 32
    • 0028061454 scopus 로고
    • Classification of hepatitis C virus based on phylogenetic analysis of the the envelope 1 and nonstructural 5B regions and identification of the five additional subtypes
    • Stuyver, L., van Arnhem, W., Wyseur, A., Hernandez, F., Delapore, E. and Maertens, G. (1994) Classification of hepatitis C virus based on phylogenetic analysis of the the envelope 1 and nonstructural 5B regions and identification of the five additional subtypes. Proc. Natl. Acad. Sci. USA. 91, 10134-10138.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 10134-10138
    • Stuyver, L.1    Van Arnhem, W.2    Wyseur, A.3    Hernandez, F.4    Delapore, E.5    Maertens, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.