Conductivity noise in transmembrane ion channels due to ion concentration fluctuations via diffusion

Biophysical Journal

Volumn 72, Issue 3, 1997, Pages 1153-1164

  Mak, Don On Daniel ^a,b   Webb, Watt W ^a  

^a Cornell University   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALAMETHICIN; ION CHANNEL;

ARTICLE; DIFFUSION; ION CONDUCTANCE; MEMBRANE CHANNEL; NOISE; PHOSPHOLIPID BILAYER; SPECTROMETRY; VOLTAGE CLAMP;

PHOCIDAE;

EID: 0031052442     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(97)78764-2     Document Type: Article

References (56)

1. Bezrukov, S. M., A. I. Irkhin, and A. I. Sibilev. 1987. An upper estimate for 1/f noise intensity in ionic conductors from experiments with a molecular microcontact. Phys. Lett. A. 123:477-480.
2. Bezrukov, S. M., M. A. Pustovoit, A. I. Sibilev, and G. M. Drabkin. 1989. Large-scale conductance fluctuations in solutions of strong electrolytes. Phys. B. 159:388-398.
3. Bezrukov, S. M., and I. Vodyanoy. 1991. Electrical noise of the open alamethicin channel. In Noise in Physical Systems and 1/f Fluctuations. T. Musha, S. Sato, and M. Yamamoto, editors. Ohmsha, Tokyo. 641-644.
4. Bezrukov, S. M., and I. Vodyanoy. 1994. Noise in biological membranes and relevant ionic systems. In Biomembrane Electrochemistry. M. Blank and I. Vodyanoy, editors. American Chemical Society, Washington, DC. 375-399.
5. Boheim, G. 1974. Statistical analysis of alamethicin channels in black lipid membranes. J. Membr. Biol. 19:277-303.
6. Cahalan, M., and E. Neher. 1992. Patch clamp techniques: an overview. Methods Enzymol. 207:3-14.
7. Carslaw, H. S., and J. C. Jaeger. 1948. Conduction of Heat in Solids. Clarendon Press, Oxford.
8. Cherry, R. J., D. Chapman, and D. E. Graham. 1972. Studies of the conductance changes induced in bimolecular lipid membranes by alamethicin. J. Membr. Biol. 7:325-344.
9. Colquhoun, D., and F. J. Sigworth. 1983. Fitting and statistical analysis of single-channel records. In Single-Channel Recording. E. Neher and B. Sakmann, editors. Plenum Press, New York and London. 191-263.
10. Creighton, J. H. 1944. Principles and Applications of Electrochemistry. I. Principles. John Wiley and Sons, New York. 92-96.
11. DeFelice, L. J. 1981. Introduction to Membrane Noise. Plenum Press, New York and London. 329-330.
12. Eisenberg, M., M. E. Kleinberg, and J. H. Shaper. 1977. Channels across black lipic membranes. Ann. N.Y. Acad. Sci. 303:281-291.
13. Elson, E. L., and D. Madge. 1974. Fluorescence correlation spectroscopy. I. conceptual basis and theory. Biopolymers. 13:1-27.
14. Elson, E. L., and W. W. Webb. 1975. Concentration correlation spectroscopy: a new biophysical probe based on occupation number fluctuations. Annu. Rev. Biophys. Bioeng. 4:311-334.
15. Feher, G., and M. B. Weissman. 1973. Fluctuation spectroscopy: determination of chemical reaction kinetics from the frequency spectrum of fluctuations. Proc. Natl. Acad. Sci. USA. 70:870-875.
16. Fox, R. O., Jr., and F. M. Richards. 1982. A voltage-gated ion channel model inferred from the crystal structure of alamethicin at 1.5 Å resolution. Nature. 300:325-330.
17. Gordon, L. G. M., and D. A. Haydon. 1976. Kinetics and stability of alamethicin conducting channels in lipid bilayers. Biochim. Biophys. Acta. 436:541-556.
18. Hamill, O. P., A. Marty, E. Neher, B. Sakmann, and F. J. Sigworth. 1981. Improved patch-clamp techniques for high-resolution current recording from cells and cell-free membrane patches. Pflugers Arch. Eur. J. Physiol. 391:85-100.
19. Holm, R. 1967. Electric Contacts: Theory and Application. Springer-Verlag, Berlin and New York. 9-20.
20. Honig, E. P. 1974. 1/f-noise of bodies of arbitrary shape and of point contacts. Philips Res. Rep. 29:253-260.
21. Hooge, F. N. 1969. 1/f noise is no surface effect. Phys. Lett. A. 29: 139-140.
22. Hooge, F. N. 1972. Discussion of recent experiments on 1/f noise. Physica. 60:130-144.
23. Hooge, F. N. 1976. 1/f noise. Phys. B. 83:14-23.
24. Hooge, F. N., and J. L. M. Gaal. 1971. Fluctuations with a 1/f spectrum in the conductance of ionic solutions and in the voltage of concentration cells. Philips Res. Rep. 26:77-90.
25. Hooge, F. N., and A. M. H. Hoppenbrouwers. 1969. Contact noise. Phys. Lett. A. 29:642-643.
26. Hoppenbrouwers, A. M. H., and F. N. Hooge. 1970. 1/f noise of spreading resistances. Philips Res. Rep. 25:69-80.
27. Jordan, P. C. 1986. Ion channel electrostatics and the shapes of channel proteins. In Ion Channel Reconstitution. C. Miller, editor. Plenum Press, London and New York. 37-55.
28. Latorre, R., and O. Alvarez. 1981. Voltage-dependent channels in planar lipid bilayer membranes. Physiol. Rev. 61:77-150.
29. Latorre, R., P. Labarca, and D. Naranjo. 1992. Surface charge effects on ion conduction in ion channels. Methods Enzymol. 207:471-501.
30. Laüger, P. 1975. Shot noise in ion channels. Biochim. Biophys. Acta. 413:1-10.
31. Laüger, P. 1985. Structural fluctuations and current noise of ionic channels. Biophys. J. 48:369-373.
32. Lax, M., and P. Mengert. 1960. Influence of trapping, diffusion and recombination on carrier concentration fluctuation. J. Phys. Chem. Solids. 14:248-267.
33. Levitt, D. G. 1974. A new theory of transport for cell membrane pores. I. General theory and application to red cell. Biochim. Biophys. Acta. 373:115-131.
34. Levitt, D. G., and G. Subramanian. 1974. A new theory of transport for cell membrane pores. II. Exact results and computer simulation (molecular dynamics). Biochim. Biophys. Acta. 373:132-140.
35. Madge, D., E. L., Elson, and W. W. Webb. 1972. Thermodynamic fluctuation in a reacting system - measurements by fluorescence correlation spectroscopy. Phys. Rev. Lett. 29:705-708.
36. Mak, D. D., and W. W. Webb. 1995a. Two classes of alamethicin transmembrane channels: molecular models from single-channel properties. Biophys. J. 69:2323-2336.
37. Mak, D. D., and W. W. Webb. 1995b. Molecular dynamics of alamethicin transmembrane channels from open-channel current noise analysis. Biophys. J. 69:2337-2349.
38. Morse, P. M., and H. Feshbach. 1953. Methods of Theoretical Physics. McGraw-Hill, New York, Toronto, and London.
39. Mueller, P., and D. O. Rudin. 1968. Action potentials induced in bimolecular lipid membranes. Nature. 217:713-719.
40. Nyquist, H. 1928. Thermal agitation of electric charge in conductors. Phys. Rev. 32:110-113.
41. Press, W. H., B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling. 1987a. Numerical Recipes. Cambridge University Press, Cambridge. 381-454.
42. Press, W. H., B. P. Flannery, S. A. Teukolsky, and W. T. Vetterling. 1987b. Numerical Recipes. Cambridge University Press, Cambridge. 102-130.
43. Richardson, J. M. 1950. The linear theory of fluctuations arising from diffusional mechanisms - an attempt at a theory of contact noise. Bell Syst. Tech. J. 29:117-141.
44. Sakmann, B., and E. Neher. 1983. Geometric parameters of pipettes and membrane patches. In Single-Channel Recording. E. Neher and B. Sakmann, editors. Plenum Press, New York and London. 37-51.
45. Sansom, M. S. P. 1991. The biophysics of peptide models of ion channels. Prog. Biophys. Mol. Biol. 55:139-235.
46. Schottky, W. 1918. Über spontane Stromschwankungen in verschiedenen Elektrizitätsleitern. Ann. Phys. 57:541-567.
47. Schwarz, G., and P. Savko. 1982. Structural and dipolar properties of the voltage-dependent pore former alamethicin in octanol/dioxane. Biophys. J. 39:211-219.
48. Sigworth, F. J. 1985. Open channel noise. I. Noise in acetylcholine receptor currents suggests conformational fluctuations. Biophys. J. 47:709-720.
49. Stevens, C. F. 1972. Inferences about membrane properties from electrical noise measurements. Biophys. J. 12:1028-1047.
50. Vandamme, L. K. J. 1976. On the calculation of 1/f noise of contacts. Appl. Phys. 11:89-96.
51. van Vliet, K. M., and J. R. Fassett. 1965. Fluctuations due to electronic transitions and transport in solids. In Fluctuation Phenomena in Solids. R. E. Burgess, editor. Academic Press, New York. 267-354.
52. Weissman, M. B. 1975. A mechanism for 1/f noise in diffusing membrane channels. Phys. Rev. Lett. 35:689-692.
53. Weissman, M. B. 1981. Fluctuation spectroscopy. Annu. Rev. Phys. Chem. 32:205-232.
54. Weissman, M. B. 1988. 1/f noise and other slow, nonexponential kinetics in condensed matter. Rev. Mod. Phys. 2:537-571.
55. Weissman, M. B., H. Schindler, and G. Feher. 1976. Determination of molecular weights by fluctuation spectroscopy: application to DNA. Proc. Natl. Acad. Sci. USA. 73:2776-2780.
56. Woolley, G. A., and B. A. Wallace. 1992. Model ion channels: gramicidin and alamethicin. J. Membr. Biol. 129:109-136.