Investigation by EPR and ENDOR spectroscopy of the nickel(I) form of cofactor F430 of Methanobacterium thermoautotrophicum and of nickel(I) octaethylisobacteriochlorin

Journal of the American Chemical Society

Volumn 119, Issue 4, 1997, Pages 733-743

  Telser, Joshua ^a,d   Fann, Yang Cheng ^a   Renner, Mark W ^c   Fajer, Jack ^c   Wang, Shengke ^b,e   Zhang, Hui ^b   Scott, Robert A ^b   Hoffman, Brian M ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c BROOKHAVEN NATIONAL LABORATORY   (United States)

^d ROOSEVELT UNIVERSITY   (United States)

^e ILLINOIS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOCHLORIN; MESNA;

ARTICLE; ELECTRON SPIN RESONANCE; ENZYME STRUCTURE; METHANOBACTERIUM THERMOAUTOTROPHICUM;

EID: 0031047161     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja9625337     Document Type: Article

References (86)

1. 6[14]4,11-dieneN4, 5,7,7,12,14,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-4,11-diene; CAPS, 3-(cyclohexylamino)-1-propanesulfonic acid; 2-Me-THF, 2-methyltetrahydrofuran; Im, imidazole; SOD, superoxide dismutase; EPR, electron paramagnetic resonance; ENDOR, electron nuclear double resonance; CW, continuous wave; rf, radiofrequency; ESE, electron spin echo; ESEEM, electron spin echo envelope modulation; EXAFS, extended X-ray absorption fine structure; MCD, magnetic circular dichroism; NQR, nuclear quadrupole resonance; hwhm, half-width at half-maximum.
2. Daniels, L.; Sparling, R.; Sprott, G. D. Biochim. Biophys. Acta 1984, 113-163.
3. Whitman, W. B. Bacteria 1985, 8, 2-84.
4. Rouviere, P. E.; Wolfe, R. S. J. Biol. Chem. 1988, 263, 7913-7916.
5. Wackett, L. P.; Honek, J. F.; Begley, T. P.; Shames, S. L.; Niederhoffer, E. C.; Hausinger, R. P.; Orme-Johnson, W. H.; Walsh, C. T. In The Bioinorganic Chemistry of Nickel; Lancaster, J. R., Jr., Ed.; VCH Publishers: New York, 1988.
6. Wolfe, R. S. Trends Biol. Sci. 1985, 396-399.
7. Rospert, S.; Linder, D.; Ellermann, J.; Thauer, R. K. Eur. J. Biochem. 1990, 194, 871-877.
8. Brenner, M. C.; Ma, L.; Johnson, M. K.; Scott, R. A. Biochim. Biophys. Acta 1992, 1120, 160-166.
9. Färber, G.; Keller, W.; Kratky, C.; Jaun, B.; Pfaltz, A.; Spinner, C.; Kobelt, A.; Eschenmoser, A. Helv. Chim. Acta 1991, 74, 697-716.
10. Won, H.; Olson, K. D.; Hare, D. R.; Wolfe, R. S.; Kratky, C.; Summers, M. F. J. Am. Chem. Soc. 1992, 114, 6880-6892.
11. Stolzenberg, A. M.; Stershic, M. T. Inorg. Chem. 1987, 26, 3082-3083.
12. Stolzenberg, A. M.; Stershic, M. T. J. Am. Chem. Soc. 1988, 110, 6391-6402.
13. Stolzenberg, A. M.; Stershic, M. T. J. Am. Chem. Soc. 1988, 110, 5397-5403.
14. Renner, M. W.; Furenlid, L. R.; Barkigia, K. M.; Forman, A.; Shim, H. K.; Simpson, D. J.; Smith, K. M.; Fajer, J. J. Am. Chem. Soc. 1991, 113, 6891-6896.
15. Renner, M. W.; Furenlid, L. R.; Stolzenberg, A. M. J. Am. Chem. Soc. 1995, 117, 293-300.
16. Sullivan, E. P., Jr.; Grantham, J. D.; Thomas, C. S.; Strauss, S. H. J. Am. Chem. Soc. 1991, 113, 5264-5270.
17. Kratky, C.; Angst, C.; Johansen, J. E. Angew. Chem., Int. Ed. Engl. 1981, 20, 211-212.
18. Procyk, A. D.; Stolzenberg, A. M.; Bocian, D. F. Inorg. Chem. 1993, 32, 627-633.
19. Procyk, A. D.; Bocian, D. F. Inorg. Chem. 1993, 32, 366-367.
20. Rospert, S.; Voges, M.; Berkessel, A.; Albracht, S. P. J.; Thauer, R. K. Eur. J. Biochem. 1992, 210, 101-107.
21. Holliger, C.; Pierik, A. J.; Reijerse, E. J.; Hagen, W. R. J. Am. Chem. Soc. 1993, 115, 5651-5656.
22. Lexa, D.; Momenteau, M.; Mispelter, J.; Savéant, J. M. Inorg. Chem. 1989, 28, 30-35.
23. Kadish, K. M.; Franzen, M. M.; Han, B. C.; Araullo-McAdams, C.; Sazou, D. J. Am. Chem. Soc. 1991, 113, 512-517.
24. 5 are identical.
25. Shiemke, A. K.; Shelnutt, J. A.; Scott, R. A. J. Biol. Chem. 1989, 264, 11236-11245.
26. Shiemke, A. K.; Kaplan, W. A.; Hamilton, C. L.; Shelnutt, J. A.; Scott, R. A. J. Biol. Chem. 1989, 264, 7276-7284.
27. Furenlid, L. R.; Renner, M. W.; Fajer, J. J. Am. Chem. Soc. 1990, 112, 8987-8989.
28. Wang, S.; Zhang, H.; Scott, R. A. Unpublished results.
29. Suh, M. P.; Kim, H. K.; Kim, M. J.; Oh, K. Y. Inorg. Chem. 1992, 31, 3620-3625.
30. Suh, M. P.; Lee, Y. J.; Jeong, J. W. J. Chem, Soc., Dalton Trans. 1995, 1577-1581.
31. Furenlid, L. R.; Renner, M. W.; Szalda, D. J.; Fujita, E. J. Am. Chem. Soc. 1991, 113, 883-892.
32. Szalda, D. J.; Fujita, E.; Sanzenbacher, R.; Paulus, H.; Elias, H. Inorg. Chem. 1994, 33, 5855-5863.
33. Ram, M. S.; Riordan, C. G.; Ostrander, R.; Rheingold, A. L. Inorg. Chem. 1995, 34, 5884-5892.
34. Hamilton, C. L.; Ma, L.; Renner, M. W.; Scott, R. A. Biochim. Biophys. Acta 1991, 1074, 312-319.
35. Stolzenberg, A. M.; Spreer, L. O.; Holm, R. H. J. Am. Chem. Soc. 1980, 102, 364-370.
36. Hoffman, B. M.; Gurbiel, R. J.; Werst, M. M.; Sivaraja, M. In Advanced EPR. Applications in Biology and Biochemistry; Hoff, A. J., Ed.; Elsevier: Amsterdam, 1989; pp 541-591.
37. Fan, C.; Doan, P. E.; Davoust, C. E.; Hoffman, B. M. J. Magn. Reson. 1992, 98, 62-72.
38. Davoust, C. E.; Doan, P., E; Hoffman, B. M. J. Mag. Reson., A 1996, 119, 38-44.
39. Hoffman, B. M.; DeRose, V. J.; Doan, P. E.; Gurbiel, R. J.; Houseman, A. L. P.; Telser, J. In EMR of Paramagnetic Molecules; Biological Magnetic Resonance; Berliner, L. J., Reuben, J., Eds.; Plenum Press; New York, 1993; Vol. 13, pp 151-218.
40. Hoffman, B. M. Acc. Chem. Res. 1991, 24, 164-170.
41. Hoffman, B. M.; DeRose, V. J.; Ong, J. L.; Davoust, C. E. J. Magn. Reson. 1994, 110, 52-57.
42. Minis, W. B. Proc. R. Soc. London 1965, 283, 452-457.
43. Davies, E. R. Phys. Lett. 1974, 47A, 1-2.
44. Gemperle, C.; Schweiger, A. Chem. Rev. 1991, 91, 1481-1505.
45. Doan, P. E.; Fan, C.; Hoffman, B. M. J. Am. Chem. Soc. 1994, 116, 1033-1041.
46. Doan, P. E.; Fan, C.; Davoust, C. E.; Hoffman, B. M. J. Magn. Reson. 1991, 95, 196-200.
47. Abragam, A.; Bleaney, B. Electron Paramagnetic Resonance of Transition Ions, 2nd ed.; Clarendon Press: Oxford, U.K., 1970.
48. Hoffman, B. M.; Martinsen, J.; Venters, R. A. J. Magn. Reson. 1984, 59, 110-123.
49. Hoffman, B. M.; Venters, R. A.; Martinsen, J. J. Magn. Reson. 1985, 62, 537-542.
50. Muha, G. M. J. Magn. Reson. 1982, 49, 431-443.
51. Telser, J.; Smith, E. T.; Adams, M. W. W.; Conover, R. C.; Johnson, M. K.; Hoffman, B. M. J. Am. Chem. Soc. 1995, 117, 5133-5140.
52. Brown, T. G.; Hoffman, B. M. Mol. Phys. 1980, 39, 1073-1109.
53. Belford, R. L.; Belford, G. G. J. Chem. Phys. 1973, 59, 853-854.
54. Hyde, J. S.; Froncisz, W. Ann. Rev. Biophys. Bioeng. 1982, 11, 391-417.
55. Pilbrow, J. R. Transition Ion Electron Paramagnetic Resonance; Clarendon Press: Oxford, U.K., 1990.
56. Lovecchio, F. V.; Gore, E. S.; Busch, D. H. J. Am. Chem. Soc. 1974, 96, 3109-3118.
57. Scholes, C. P.; Lapidot, A.; Mascarenhas, R.; Inubushi, T.; Isaacson, R. A.; Feher, G. J. Am. Chem. Soc. 1982, 104, 2724-2735.
58. 15 so that only an assignment of the subdoublet splitting to quadrupole coupling is reasonable.
59. We use the term pyrrole here, although in these reduced porphyrins, the term pyrrole/pyrroline is more appropriate.
60. i to be assigned.
61. Hsieh, Y. N.; Rubenacker, G. V.; Cheng, C. P.; Brown, T. L. J. Am. Chem. Soc. 1977, 99, 1384-1389.
62. Ashby, C. I. H.; Cheng, C. P.; Brown, T. L. J. Am. Chem. Soc. 1978, 100, 6057-6063.
63. Ashby, C. I. H.; Cheng, C. P.; Duesler, E. N.; Brown, T. L. J. Am. Chem. Soc. 1978, 100, 6063-6067.
64. 3| = 0.55 MHz cannot give a traceless P tensor. However, the pairing ac, bd gives |P| ≈ 0.8 and 1.3 MHz, respectively, and the pairing ab, cd gives |P| ≈ 0.4 and 0.9 MHz, respectively, both of which satisfy this requirement.
65. H ≈ 13-14 MHz.
66. Jaun, B.; Pfaltz, A. J. Chem. Soc., Chem. Commun. 1986, 1327-1329.
67. Hitchman, M. A.; Olson, C. D.; Belford, R. L. J. Chem. Phys. 1969, 50, 1195-1203.
68. Hitchman, M. A. J. Chem. Soc. A 1970, 1970, 4-9.
69. Belford, R. L.; Harrowfield, B.; Pilbrow, J. R. J. Magn. Reson. 1977, 28, 433-439.
70. Shiemke, A. K.; Scott, R. A.; Shelnutt, J. A. J. Am. Chem. Soc. 1988, 110, 1645-1646.
71. Cheesman, M. R.; Ankel-Fuchs, D.; Thauer, R. K.; Thomson, A. J. Biochem. J. 1989, 260, 613-616.
72. Hamilton, C. L.; Scott, R. A.; Johnson, M. K. J. Biol. Chem. 1989, 264, 11605-11613.
73. Richardson, P. F.; Chang, C. K.; Hanson, L. R.; Spaulding, L. D.; Fajer, J. J. Phys. Chem. 1979, 83, 3420.
74. Godziela, G. M.; Goff, H. M. J. Am. Chem. Soc. 1986, 108, 2237-2243.
75. 9 ring A has 2θ = 112.0° giving n = 1.20; and rings B, C, and D have average 2θ = 108.5(5)°, giving n = 0.93.
76. Rist, G. H.; Hyde, J. S. J. Chem. Phys. 1969, 50, 4532-4542.
77. Goodman, B. A.; Raynor, J. B. In Advances in Inorganic Chemistry and Radiochemistry; Emeléus, H. J., Sharpe, A. G., Eds.; Academic Press: New York , 1970; Vol. 13, pp 135-362.
78. 52,76
79. Snetsinger, P. A.; Chasteen, N. D.; van Willigen, H. J. Am. Chem. Soc. 1990, 112, 8155-8160.
80. 2,4.
81. Ballhausen, C. J.; Gray, H. B. In Molecular Orbital Theory, W. A. Benjamin, Inc.: New York, 1965; Chapter 8.
82. IITPP.
83. Gurbiel, R. J.; Peoples, R.; Doan, P. E.; Cline, J. F.; McCracken, J.; Peisach, J.; Hoffman, B. M.; Valentine, J. S. Inorg. Chem. 1993, 32, 1813-1819.
84. D3| ≤ 0.1 MHz.
85. Barkigia, K. M.; Renner, M. W.; Furenlid, L. R.; Medforth, C. J.; Smith K. M.; Fajer, J. J. Am. Chem. Soc. 1993, 115, 3627-3635.
86. Telser, J.; Renner, M. W.; Hoffman, B. M. Unpublished results.