Fine structure physical mapping of a 1.9 Mb region of chromosome 13q12

Annals of Human Genetics

Volumn 61, Issue 1, 1997, Pages 15-24

  Still, I H ^a   Roberts, T ^a   Cowell, J K ^a  

^a LERNER RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA MARKER; MICROSATELLITE DNA;

ARTICLE; CHROMOSOME 13Q; CHROMOSOME 8P; CHROMOSOME TRANSLOCATION; GENE DELETION; GENE MAPPING; HUMAN; NONHUMAN; PRIORITY JOURNAL; RESTRICTION MAPPING; SEQUENCE TAGGED SITE; YEAST ARTIFICIAL CHROMOSOME;

BASE SEQUENCE; CENTROMERE; CHROMOSOME ABERRATIONS; CHROMOSOME MAPPING; CHROMOSOMES, ARTIFICIAL, YEAST; CHROMOSOMES, HUMAN, PAIR 13; CHROMOSOMES, HUMAN, PAIR 8; DNA FRAGMENTATION; DNA, COMPLEMENTARY; GENE EXPRESSION; GENE LIBRARY; GENETIC MARKERS; HUMANS; LEUKEMIA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; MYELOPROLIFERATIVE DISORDERS; TRANSLOCATION, GENETIC;

EID: 0031046448     PISSN: 00034800     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0003480096005908     Document Type: Article

References (38)

1. ABRUZZO, L. V., JAFFE, E. S., COTELINGAM, J. D., WHANG-PENG, J., DEL DUCA, V. & MEDEIROS, L. J. (1992). T-cell lymphoblastic lymphoma with eosinophilia associated with subsequent myeloid malignancy. Am. J. Surg. Pathol. 16: 236-245.
2. ADAMS, M. D., KERLAVAGE, A. R., FLEISCHMANN, R. D., et al. (1995). Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377 (Suppl): 3-174.
3. ANDERSON, C. (1993). BAC to the future. Science 259: 1686.
4. AZIBI, K., BACHNER, L., SECKMANN, J. S., MATSUMUR, K., et al. (1993). Severe childhood autosomal recessive muscular dystrophy with the deficiency of the 50kDa dystrophin-associated glycoprotein maps to chromosome 13q12. Hum. Mol. Genet. 2: 1423-1428.
5. BEN OTHMANE, K., BEN HAMIDA, M., PERICAK-VANCE, M. A., BEN HAMIDA, C., BLEL, S., CARTER, S., BOWCOCK, A. M., PETRUHKIN, K., GILLIAM, T. C., ROSES, A. D., HENTATI, F. & VANCE, J. (1992). Linkage of Tunisian autosomal recessive Duchenne-like muscular dystrophy to the pericentromeric region of chromosome 13q. Nature Genet. 2: 315-317.
6. BERRY, R., STEVENS, T. J., WALTER, N. A., WILCOX, A. S., RUBANO, T., HOPKINS, J. A., GOOLD, R., SOARES, M. B. & SIKELA, J. M. (1995). Genebased sequence-tagged sites (STSs) as the basis for a human gene map. Nat. Genet. 10: 415-423.
7. BICKMORE, W. & BIRD, A. P. (1992). Use of restriction enzymes to detect and isolate genes from mammalian cells. Methods Enzym. 216: 224-244.
8. BOGUSKI, M. S. & SCHULER, G. D. (1995). Establishing a human transcript map. Nature Genetics 10: 369-371.
9. BONALDO, F. M., YU, M.-T., JELENC, P., BROWN, S., SU, L., LAWTON, L., DEAVEN, L., EFSTRATIADIS, A., WARBURTON, D. & SOARES, M. B. (1994). Selection of cDNAs using chromosome-specific genomic clones: application to human chromosome 13. Hum. Mol. Genet. 3: 1663-1673.
10. BOWN, N., YULE, S. M., EVANS, J., KERNAHAN, J. & REID, M. M. (1992). Chronic myelomonocytic leukemia with t(13;14) in a child. Cancer Genet. Cytogenet. 60: 190-192.
11. CHIYODA, S., MORIKAWA, T. & TAKAHARA, O. (1994). Atypical chronic myeloproliferative disorder with translocation (12;13)(p13;q12) and tumor formation. Rinsho Ketsueki. 35: 1355-60.
12. CHUMAKOV, I. M., RIGAULT, P., LE GALL, I., et al.. (1995). A YAC contig map of the human genome. Nature 377 (Suppl): 175-297.
13. COWELL, J. K. & MITCHELL, C. D. (1989). A somatic cell hybrid mapping panel for the regional assignment of human chromosome 13 specific DNA sequences. Cytogenet. Cell Genet. 52: 1-6.
14. FAGAN, K., HYDE, S. & HARRISON, P. (1993). Translocation (8;13) and T-cell lymphoma. Cancer Genet. Cytogenet. 65: 71-73.
15. GRISHIN, A. V., SVERDLOV, V. E., KOSTINA, M. B. & MODYANOV, N. N. (1994). Cloning and characterization of the entire cDNA encoded by ATP1AL1 - a member of the human Na, K/H, K-ATPase gene family. FEBS Lett 349: 144-150.
16. GUILFORD, P., BEN ARAB, S., BLANCHARD, S., LEVILLIERS. J., WEISSENBACH, J., BELKAHIA, A. & PETIT, C. (1994). A non-syndromic form of neurosensory, recessive deafness maps to the pericentromeric region of chromosome 13q. Nature Genet. 6: 24-28.
17. GUILFORD, P., DODÉ, C., CROZET, F., et al. (1995). A YAC contig and an EST map in the pericentromeric region of chromosome 13 surrounding the loci for neurosensory nonsyndromic deafness (DFNB1 and DFNA3) and limb-girdle muscular dystrophy type 2C (LGMD2C). Genomics 29: 163-169.
18. HAWTHORN, L. A., CHAPMAN R., OSCIER, D. & COWELL, J. K. (1993). The consistent 13q14 translocation breakpint seen in chronic B-cell leukaemia (BCLL) involves the deletion of the D13S25 locus which lies distal to the retinoblastoma predisposition gene. Oncogene 8: 1415-1419.
19. HAWTHORN, L. A. & COWELL, J. (1995). Integration of the physical and genetic linkage map for human chromosome 13. Genomics 27: 399-404.
20. HAWTHORN, L. A., ROBERTS, T., VERLIND, E., KOOY, R. F., & COWELL, J.K (1995). A yeast artificial chromosome contig which spans the RB1-D13S31 interval on human chromosome 13 and encompasses the frequently deleted region in B-cell chronic lymphocytic leukaemia. Genomics 30: 425-430.
21. HOULGATTE, R., MARIAGE-SAMSON, R., DUPRAT, S., TESSIER, A., BENTOLILA, S., LAMY, B. & AUFFRAY, C. (1996). The Genexpress Index: a resource for gene discovery and the genic map of the human chromosomes. Genome Res. 5: 272-304.
22. INHORN, R. C., ASTER, J. C., ROACH, S. A., SLAPAK, C. A., SOIFFER, R., TANTRAVAHI, R. & STONE, R. M. (1995). A syndrome of lymphoblastic lymphoma, eosinophilia, and myeloid hyperplasia/malignancy associated with t(8;13)(p11;q11): description of a distinctive clinicopathologic entity. Blood 85: 1881-1887.
23. JOHANSSON, B., MERTENS, F. & MITELMAN, F. (1993). Cytogenetic deletion maps of hematologic neoplasms: circumstantial evidence for tumor suppressor loci. Genes Chromosom. Cancer 8: 205-218.
24. KEMPSKI, H., MACDONALD, D., MICHALSKI, A. J., ROBERTS, T., GOLDMAN, J. M., CROSS, C. P. & COWELL, J. K. (1995). Localization of the 8;13 translocation breakpoint associated with myeloproliferative disease to a 1·5 Mbp region of chromosome 13. Genes Chromosom. Cancer 12: 283-287.
25. KIBAR, Z., DER KALOUSTIAN, V. M., BRAIS, B., HANI, V., FRASIER, F. C. & ROULEAU, G. A. (1996). The gene responsible for Cloustan hidrotic ectodermal dysplasia maps to the pericentromeric region of chromosome 13q. Hum. Mol. Genet. 5: 543-547.
26. LEWIS, B. C, SHAH, N. P., BRAUN, B. S. & DENNY, C. T. (1992). A yeast artificial chromosome fragmentation vector based on lysine-2. GATA 9: 86-90.
27. LINDSAY, S. & BIRD, A. P. (1987). Use of restriction enzymes to detect potential gene sequences in mammalian DNA. Nature 327: 336-338.
28. LYNCH, S. A., ASHCROFT, K. A., ZWOLINSKI, S., CLARKE, C. & BURN, J. (1995). Kabuki syndrome-like features in monozygotic twin boys with a pseudodicentric chromosome 13. J. Med. Genet. 32: 227-230.
29. MICHALSKI, A. J., COTTER, F. E. & COWELL, J. K. (1992). Isolation of chromosome-specific DNA sequences from an Alu polymerase chain reaction library to define the breakpoint in a patient with a constitutional translocation t(1;13)(q22;q12) and ganglioneuroblastoma. Oncogene 7: 1595-1602.
30. MITCHELL, C. D., VENTRIS, J. A., WARR, T. J. & COWELL, J. K. (1991). Molecular definition in a somatic cell hybrid of a specific 2:13 translcoation breakpoint in childhood rhabdomyosarcoma. Oncogene 6: 89-92.
31. NAEEM, R., SINGER, S. & FLETCHER, J. A. (1995). Translocation t(8;13)(p11;q11-12) in stem cell leukemia/lymphoma of T-cell and myeloid lineages. Genes Chromosom. Cancer 12: 148-151.
32. NAGASE, T., SEKI, N., TANAKA, A., ISHIKAWA, K.-I. & NOMURA, N. (1996). Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA 0161 - KIAA 0200) deduced by analysis of cDNA clones from human cell line KG1. DNA Research. In press.
33. PIERCE, J. C., SAUER, B. & STERNBERG, N. (1992). A positive selection vector for cloning high molecular weight DNA by the bacteriophage P1 system: Improved cloning efficiency. Proc. Natl. Acad. USA. 89: 2056-2060.
34. POLYMEROPOLOS, M. H., XIAO, H., SIKELA, J. M., ADAMS, M., VENTER, J. C. & MERRIL, C. R. (1993). Chromosomal distribution of 320 genes from a brain cDNA library. Nature Genetics 4: 381-386.
35. SLEE, J. J., SMART, R. D. & VILJOEN, D. L. (1991). Deletion of chromosome 13 in Moebius syndrome. J. Med. Genet. 28: 413-414.
36. STILL, I. H., ROBERTS, T., BIA, B., HAWTHORN, L. A., AUFFRAY, C. & COWELL, J. (1996). Incorporation of 35 novel gene transcripts into the physical and genetic map of human chromosome 13. Genomics 33: 159-166.
37. WASHINGTON, S. S., WARBURTON, D. & CHAKRAVARTI, A. (1995). Report of the second international workshop on human chromosome 13 mapping 1994. Cytogenet Cell Genet 70: 1-22.
38. ZITER, F. A., WISER, W. C. & ROBINSON, A. (1977). Three generation pedigree of a Mobius syndrome variant with chromosome translocation. Arch. Neurol. 34: 437-442.