Binding of iodide to Arthromyces ramosus peroxidase investigated with X- ray crystallographic analysis, 1H and 127I NMR spectroscopy, and steady- state kinetics

Journal of Biological Chemistry

Volumn 272, Issue 9, 1997, Pages 5752-5756

  Fukuyama, Keiichi ^a   Sato, Koichi ^b   Itakura, Hiroyuki ^a   Takahashi, Seizo ^c   Hosoya, Toichiro ^d,e  

^a OSAKA UNIVERSITY   (Japan)

^b KUMAMOTO UNIVERSITY   (Japan)

^c JAPAN WOMEN'S UNIVERSITY   (Japan)

^d TOKYO UNIVERSITY OF SCIENCE   (Japan)

^e NONE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

HEME; IODINE; PEPTIDE; PEROXIDASE;

ARTHROMYCES RAMOSUS; ARTICLE; BINDING KINETICS; BINDING SITE; ELECTRON TRANSPORT; ENZYME BINDING; FUNGUS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; STEADY STATE; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; FOURIER ANALYSIS; FUNGAL PROTEINS; HYDROGEN-ION CONCENTRATION; IODIDES; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MITOSPORIC FUNGI; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEROXIDASE; PROTEIN CONFORMATION;

'ARTHROMYCES RAMOSUS'; ARMORACIA RUSTICANA; FUNGI;

EID: 0031041594     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.272.9.5752     Document Type: Article

References (59)

1. Dunford, H. B., and Stillman, J. S. (1976) Coord. Chem. Rev. 19, 187-251
2. Everse, J., Everse, K. E., and Grisham, M. B. (1991) Peroxidases in Chemistry and Biology, Vols. I and II, CRC Press, Boca Raton, FL
3. Björkstén, F. (1970) Biochim. Biophys. Acta 212, 396-406
4. Roman, R., and Dunford, H. B. (1972) Biochemistry 11, 2076-2082
5. Ohtaki, S., Nakagawa, H., Kimura, S., and Yamazaki, I. (1981) J. Biol. Chem. 256, 805-810
6. Magnusson, R. P., Taurog, A., and Dorris, M. L. (1984) J. Biol. Chem. 259, 197-205
7. Kimura, S., and Yamazaki, I. (1978) Arch. Biochem. Biophys. 189, 14-19
8. Araiso, T., and Dunford, H. B. (1981) J. Biol. Chem. 256, 10099-10104
9. Pommier, J., Sokoloff, L., and Nunez, J. (1973) Eur. J. Biochem. 38, 497-506
10. Bhattacharyya, D. Kr., Bandyopadhyay, U., and Banerjee, R. K. (1992) J. Biol. Chem. 267, 9800-9804
11. Ugarova, N. N., Savitski, A. P., and Berezin, I. V. (1981) Biochim. Biophys. Acta 662, 210-219
12. Sakurada, J., Hosoya, T., Shimizu, T., and Hatano, M. (1985) Chem. Lett. 211-214
13. Sakurada, J., Takahashi, S., Shimizu, T., Hatano, M., Nakamura, S., and Hosoya, T. (1987) Biochemistry 26, 6478-6483
14. Modi, S., Behere, D. V., and Mitra, S. (1989) Biochim. Biophys. Acta 996, 214-225
15. Modi, S., Behere, D. V., and Mitra, S. (1989) J. Biol. Chem. 264, 19677-19684
16. Modi, S., Behere, D. V., and Mitra, S. (1989) Biochemistry 28, 4689-4694
17. Crull, G. B., and Goff, H. M. (1993) J. Inorg. Biochem. 15, 181-192
18. Sakurada, J., Takahashi, S., and Hosoya, T. (1987) J. Biol. Chem. 262, 4007-4010
19. La Mar, G. N., de Ropp, J. S., Smith, K. M., and Langry, K. C. (1980) J. Biol. Chem. 255, 6646-6652
20. Sakurada, J., Takahashi, S., and Hosoya, T. (1986) J. Biol. Chem. 261, 9657-9662
21. Hosoya, T., Sakurada, J., Kurokawa, C., Toyoda, R., and Nakamura, S. (1989) Biochemistry 28, 2639-2644
22. Harris, R. Z., Newmyer, S. L., and Ortiz de Montellano, P. R. (1993) J. Biol. Chem. 268, 1637-1645
23. Welinder, K. G. (1992) Curr. Opin. Struct. Biol. 2, 388-393
24. Kunishima, N., Fukuyama, K., Matsubara, H., Hatanaka, Shibano, Y., and Amachi, T. (1994) J. Mol. Biol. 235, 331-344
25. Sawai-Hatanaka, H., Ashikari, T., Tanaka, Y., Asada, Y., Nakayama, T., Minakata, H., Kunishima, N., Fukuyama, K., Yamada, H., Shibano, Y., and Amachi, T. (1995) Biosci. Biotechnol. Biochem. 59, 1221-1228
26. Kjalke, M., Andersen, M. B., Schneider, P., Christensen, B., Schülein, M., and Welinder, K. G. (1992) Biochim. Biophys. Acta 1120, 248-256
27. Morita, Y., Yamashita, H., Mikami, B., Iwamoto, H., Aibara, S., Terada, M., and Minami, J. (1988) J. Biochem. (Tokyo) 103, 693-699
28. Lukat, G. S., Rogers, K. R., Jabro, M. N., and Goff, H. M. (1989) Biochemistry 28, 3338-3345
29. Baunsgaard, L., Dalbøge, H., Houen, G., Rasmussen, E. M., and Welinder K. G. (1993) Eur. J. Biochem. 213, 605-611
30. Andersen, M. B., Hsuanyu, Y., Welinder, K. G., Schneider, P., and Dunford, H. B. (1991) Acta Chem. Scand. 45, 1080-1086
31. Deleted in proof
32. Higashi, T. (1990) PROCESS: A Program for Indexing and Processing R-AXIS II Imaging Plate Data, Rigaku Corporation, Tokyo
33. Kunishima, N., Amada, F., Fukuyama, K., Kawamoto, M., Matsunaga, T., and Matsubara, H. (1996) FEBS Lett. 378, 291-294
34. Brünger, A. T. (1992) XPLOR, Version 3.0, Yale University, New Haven, CT
35. Jones, T. A. (1978) J. Appl. Crystallogr. 11, 268-272
36. Roussel, A., and Cambillau, C. (1989) in Silicon Graphics Geometry Partner Directory (Fall 1989), pp. 77-78, Silicon Graphics, Mountain View, CA
37. Takahashi, S., and Nagayama, K. (1988) J. Magn. Reson. 76, 347-351
38. Deleted in proof
39. Hosoya, T. (1963) J. Biochem. (Tokyo) 53, 381-388
40. Dugad, L. B., and Goff, H. M. (1992) Biochim. Biophys. Acta 1122, 63-69
41. Veitch, N. C., Tams, J. W., Vind, J., Dalbøge, H., and Welinder, K. G. (1994) Eur. J. Biochem. 222, 909-918
42. Deleted in proof
43. Deleted in proof
44. Deleted in proof
45. Fukuyama, K., Kunishima, N., Amada, F., Kubota, T., and Matsubara, T. (1995) J. Biol. Chem. 270, 21884-21892
46. Bhattacharyya, D. K., Bandyopadhyay, U., and Banerjee, R. Kr. (1993) J. Biol. Chem. 268, 22292-22298
47. Edwards, S. L., Xuong, Ng. h., Hamlin, R. C., and Kraut, J. (1987) Biochemistry 26, 1503-1511
48. Fita, I., and Rossmann, M. G. (1985) J. Mol. Biol. 185, 21-37
49. Marcus, R. A., and Sutin, N. (1985) Biochim. Biophys. Acta 811, 265-322
50. McLendon, G., and Hake, R. (1992) Chem. Rev. 92, 481-490
51. Critchlow, J. E., and Dunford, H. B. (1972) J. Biol. Chem. 247, 3714-3725
52. Smulevich, G., Feis, A., Focardi, C., Tams, J., and Welinder, K. G. (1994) Biochemistry 33, 15425-15432
53. Dunford, H. B. (1991) in Peroxidases in Chemistry and Biology (Everse, J., Everse, K., and Grisham, M. B., eds) Vol. II, pp. 1-24, CRC Press, Boca Raton, FL
54. Thanabal, V., de Ropp, J. S., and La Mar, G. N. (1988) J. Am. Chem. Soc. 110, 3027-3035
55. Sitter, A. J., Reczek, C. M., and Terner, J. (1985) J. Biol. Chem. 260, 7515-7522
56. Hashimoto, S., Tatsuno, Y., and Kitagawa, T. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 2417-2421
57. Oertling, W. A., and Babcock, G. T. (1988) Biochemistry 27, 3331-3338
58. DeVault, D. (1984) in Quantum-Mechanical Tunnelling in Biological Systems, Cambridge University Press, Cambridge
59. Nagaoka, S., Kuranaka, A, Tsuboi, H., Nagashima, U., and Mukai, K. (1992) J. Phys. Chem. 96, 2754-2761