-
1
-
-
0028941917
-
Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
-
Brown, J. R., and W. F. Doolittle. 1995. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc. Natl. Acad. Sci. USA 92:2441-2445.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2441-2445
-
-
Brown, J.R.1
Doolittle, W.F.2
-
2
-
-
0024530633
-
Gene structure, organization and expression in archaebacteria
-
Brown, J. W., C. J. Daniels, and J. N. Reeve. 1989. Gene structure, organization and expression in archaebacteria. Crit. Rev. Microbiol. 16:287-338.
-
(1989)
Crit. Rev. Microbiol.
, vol.16
, pp. 287-338
-
-
Brown, J.W.1
Daniels, C.J.2
Reeve, J.N.3
-
3
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult, C. J., O. White, G. J. Olsen, L. Zhou, R. D. Fleischmann, G. G. Sutton, J. A. Blake, L. M. Fitzgerald, R. A. Clayton, J. D. Gocayne, A. R. Kerlavage, and C. Venter. 1996. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273:1058-1073.
-
(1996)
. Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
Fitzgerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
Kerlavage, A.R.11
Venter, C.12
-
4
-
-
0027432796
-
+ -isocitrate dehydrogenase with altered isocitrate binding sites: Contribution of IDH1 and IDH2 subunits to regulation and catalysis
-
+ -isocitrate dehydrogenase with altered isocitrate binding sites: contribution of IDH1 and IDH2 subunits to regulation and catalysis. Biochemistry 32:9323-9328.
-
(1993)
Biochemistry
, vol.32
, pp. 9323-9328
-
-
Cupp, J.R.1
McAlister-Henn, L.2
-
5
-
-
0024278531
-
The membrane-associated ATPase from Sulfolobus acidocaldarius is distantly related to F1-ATPase as assessed from the primary structure of its alpha-subunit
-
Denda, K., J. Konishi, T. Oshima, T. Date, and M. Yoshida. 1988. The membrane-associated ATPase from Sulfolobus acidocaldarius is distantly related to F1-ATPase as assessed from the primary structure of its alpha-subunit. J. Biol. Chem. 263:6012-6015.
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 6012-6015
-
-
Denda, K.1
Konishi, J.2
Oshima, T.3
Date, T.4
Yoshida, M.5
-
8
-
-
0029944211
-
Conservation of aconitase residues revealed by multiple sequence analysis. Implications for structure/function relationship
-
Frishman, D., and W. Hentze. 1996. Conservation of aconitase residues revealed by multiple sequence analysis. Implications for structure/function relationship. Eur. J. Biochem. 239:197-200.
-
(1996)
Eur. J. Biochem.
, vol.239
, pp. 197-200
-
-
Frishman, D.1
Hentze, W.2
-
9
-
-
0022423889
-
Use of intermediate partitioning to calculate intrinsic isotope effects for the reaction catalyzed by malic enzyme
-
Grissom, C., and W. W. Cleland. 1985. Use of intermediate partitioning to calculate intrinsic isotope effects for the reaction catalyzed by malic enzyme. Biochemistry 12:944-948.
-
(1985)
Biochemistry
, vol.12
, pp. 944-948
-
-
Grissom, C.1
Cleland, W.W.2
-
10
-
-
0040914011
-
ρ-σ-π analysis; method for the correlation of biological activity and chemical structure
-
Hansch, C., and T. Fujita. 1964. ρ-σ-π analysis; method for the correlation of biological activity and chemical structure. J. Am. Chem. Soc. 86(8):5175-5180.
-
(1964)
J. Am. Chem. Soc.
, vol.86
, Issue.8
, pp. 5175-5180
-
-
Hansch, C.1
Fujita, T.2
-
11
-
-
0025004005
-
Subunit location and sequences of the cysteinyl peptides of pig heart NAD-dependent isocitrate dehydrogenase
-
Huang, Y. C., and R. F. Colman. 1990. Subunit location and sequences of the cysteinyl peptides of pig heart NAD-dependent isocitrate dehydrogenase. Biochemistry 29:8266-8273.
-
(1990)
Biochemistry
, vol.29
, pp. 8266-8273
-
-
Huang, Y.C.1
Colman, R.F.2
-
13
-
-
0028774536
-
+: Ligand-induced loop closing and mechanism for cofactor specificity
-
+: ligand-induced loop closing and mechanism for cofactor specificity. Structure 15(2):1007-1016.
-
(1994)
Structure
, vol.15
, Issue.2
, pp. 1007-1016
-
-
Hurley, J.H.1
Dean, A.M.2
-
14
-
-
0024392725
-
Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase
-
Hurley, J. H., P. E. Thorsness, V. Ramalingam, N. H. Helmers, D. E. Koshland, Jr., and R. M. Stroud. 1989. Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase. Proc. Natl. Acad. Sci. USA 86:8635-8639.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 8635-8639
-
-
Hurley, J.H.1
Thorsness, P.E.2
Ramalingam, V.3
Helmers, N.H.4
Koshland Jr., D.E.5
Stroud, R.M.6
-
15
-
-
0026334204
-
Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 Å resolution
-
Imada, K., M. Sato, N. Tanaka, Y. Katsube, Y. Matsuura, and T. Oshima. 1991. Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 Å resolution. J. Mol. Biol. 222:725-738.
-
(1991)
J. Mol. Biol.
, vol.222
, pp. 725-738
-
-
Imada, K.1
Sato, M.2
Tanaka, N.3
Katsube, Y.4
Matsuura, Y.5
Oshima, T.6
-
16
-
-
0027972087
-
Functional and evolutionary implications of a [3Fe-4S] cluster of the dicluster-type ferredoxin from the thermoacidophilic archaeon, Sulfolobus sp. strain 7
-
Iwasaki, T., T. Wakagi, Y. Isogai, K. Tanaka, T. Iizuka, and T. Oshima. 1994. Functional and evolutionary implications of a [3Fe-4S] cluster of the dicluster-type ferredoxin from the thermoacidophilic archaeon, Sulfolobus sp. strain 7. J. Biol. Chem. 269:29444-29450.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 29444-29450
-
-
Iwasaki, T.1
Wakagi, T.2
Isogai, Y.3
Tanaka, K.4
Iizuka, T.5
Oshima, T.6
-
17
-
-
0029617402
-
Resolution of the aerobic respiratory system of the thermoacidophilic archaeon. Sulfolobus sp. strain 7. the archaeal novel respiratory complex II (succinate: Caldariellaquinone oxidoreductase complex) inherently lacks heme group
-
Iwasaki, T., T. Wakagi, and T. Oshima. 1995. Resolution of the aerobic respiratory system of the thermoacidophilic archaeon. Sulfolobus sp. strain 7. The archaeal novel respiratory complex II (succinate: caldariellaquinone oxidoreductase complex) inherently lacks heme group. J. Biol. Chem. 270:30902-30908.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 30902-30908
-
-
Iwasaki, T.1
Wakagi, T.2
Oshima, T.3
-
18
-
-
0028997589
-
Sulredoxin: A novel iron-sulfur protein of the thermoacidophilic archaeon Sulfolobus sp. strain 7 with a Rieske-type [2Fe-2S] center
-
Iwasaki, T., Y. Isogai, T. Iizuka, and T. Oshima. 1995. Sulredoxin: a novel iron-sulfur protein of the thermoacidophilic archaeon Sulfolobus sp. strain 7 with a Rieske-type [2Fe-2S] center. J. Bacteriol. 177:2576-2582.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 2576-2582
-
-
Iwasaki, T.1
Isogai, Y.2
Iizuka, T.3
Oshima, T.4
-
19
-
-
0028853604
-
Ligand-induced changes in the conformation of 3-isopropylmalate dehydrogenase from Thermits thermophilus
-
Kadono, S., M. Sakurai, H. Moriyama, M. Sato, Y. Hayashi, T. Oshima, and N. Tanaka. 1995. Ligand-induced changes in the conformation of 3-isopropylmalate dehydrogenase from Thermits thermophilus. J. Biochem. 118:745-752.
-
(1995)
J. Biochem.
, vol.118
, pp. 745-752
-
-
Kadono, S.1
Sakurai, M.2
Moriyama, H.3
Sato, M.4
Hayashi, Y.5
Oshima, T.6
Tanaka, N.7
-
20
-
-
0027515241
-
3-Isopropylmalate dehydrogenase from chemolithoautotroph Thiobacillus ferrooxidans: DNA sequence, enzyme purification, and characterization
-
Kawaguchi, H., K. Inagaki, Y. Kuwata, H. Tanaka, and T. Tano. 1993. 3-Isopropylmalate dehydrogenase from chemolithoautotroph Thiobacillus ferrooxidans: DNA sequence, enzyme purification, and characterization. J. Biochem. 114:370-377.
-
(1993)
J. Biochem.
, vol.114
, pp. 370-377
-
-
Kawaguchi, H.1
Inagaki, K.2
Kuwata, Y.3
Tanaka, H.4
Tano, T.5
-
21
-
-
0025280662
-
Subunit structure, expression, and function of NAD(H)-specific isocitrate dehydrogenase in Saccharomyces cerevisiae
-
Keys, D. A., and L. McAlister-Henn. 1990. Subunit structure, expression, and function of NAD(H)-specific isocitrate dehydrogenase in Saccharomyces cerevisiae. J. Bacteriol. 172:4280-4287.
-
(1990)
J. Bacteriol.
, vol.172
, pp. 4280-4287
-
-
Keys, D.A.1
McAlister-Henn, L.2
-
22
-
-
0028091179
-
Hydrophobic interaction at the subunit interface contributes to the thermostability of 3-isopropylmalate dehydrogenase from an extreme thermophile, Thermus thennophilus
-
kirino, H., M. Aoki, M. Aoshima, Y. Hayashi, M. Ohba, A. Yamagishi, T. Wakagi, and T. Oshima. 1994. Hydrophobic interaction at the subunit interface contributes to the thermostability of 3-isopropylmalate dehydrogenase from an extreme thermophile, Thermus thennophilus. Eur. J. Biochem. 220:275-281.
-
(1994)
Eur. J. Biochem.
, vol.220
, pp. 275-281
-
-
Kirino, H.1
Aoki, M.2
Aoshima, M.3
Hayashi, Y.4
Ohba, M.5
Yamagishi, A.6
Wakagi, T.7
Oshima, T.8
-
23
-
-
14444285107
-
Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfobus acidocaldarius by use of 5-fluoroorotic acid
-
Kondo, S., A. Yamagishi, and T. Oshima. 1991. Positive selection for uracil auxotrophs of the sulfur-dependent thermophilic archaebacterium Sulfobus acidocaldarius by use of 5-fluoroorotic acid. J. Bacteriol. 175:1532-1536.
-
(1991)
J. Bacteriol.
, vol.175
, pp. 1532-1536
-
-
Kondo, S.1
Yamagishi, A.2
Oshima, T.3
-
24
-
-
0028047371
-
Co-enzyme specificity of 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8
-
Miyazaki, K., and T. Oshima. 1994. Co-enzyme specificity of 3-isopropylmalate dehydrogenase from Thermus thermophilus HB8. Protein Eng. 7(3):401-403.
-
(1994)
Protein Eng.
, vol.7
, Issue.3
, pp. 401-403
-
-
Miyazaki, K.1
Oshima, T.2
-
25
-
-
0027504526
-
Kinetic analysis on the substrate specificity of 3-isopropylmalale dehydrogenase
-
Miyazaki, K., K. Kakinuma, H. Terasawa, and T. Oshima. 1993. Kinetic analysis on the substrate specificity of 3-isopropylmalale dehydrogenase. FEBS Lett. 332:35-36.
-
(1993)
FEBS Lett.
, vol.332
, pp. 35-36
-
-
Miyazaki, K.1
Kakinuma, K.2
Terasawa, H.3
Oshima, T.4
-
28
-
-
0028986679
-
Thermal stability of chimeric isopropylmalate dehydrogenase gene constructed from a thermophile and a mesophile
-
Numata, K., M. Muro, N. Akutsu, Y. Hosoh, A. Yamagishi, and T. Oshima. 1995. Thermal stability of chimeric isopropylmalate dehydrogenase gene constructed from a thermophile and a mesophile. Protein Eng. 8:39-43.
-
(1995)
Protein Eng.
, vol.8
, pp. 39-43
-
-
Numata, K.1
Muro, M.2
Akutsu, N.3
Hosoh, Y.4
Yamagishi, A.5
Oshima, T.6
-
29
-
-
0022350311
-
Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus sulfataricus and its evolutionary implications
-
Olsen, G. J., N. R. Pace, M. Nuell, B. P. Kaime, R. Gupta, and C. R. Woese. 1985. Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus sulfataricus and its evolutionary implications. J. Mol. Evol. 22:301-307.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 301-307
-
-
Olsen, G.J.1
Pace, N.R.2
Nuell, M.3
Kaime, B.P.4
Gupta, R.5
Woese, C.R.6
-
30
-
-
0028055018
-
The winds of (evolutionary) change: Breathing new life into microbiology
-
Olsen, G. J., C. R. Woese, and R. Overbeek. 1994. The winds of (evolutionary) change: breathing new life into microbiology. J. Bacteriol. 176:1-6.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 1-6
-
-
Olsen, G.J.1
Woese, C.R.2
Overbeek, R.3
-
31
-
-
0028221519
-
Three-dimensional structures of chimeric enzymes between Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases
-
Onodera, K., M. Sakurai, H. Moriyama, N. Tanaka, K. Numata, T. Oshima, M. Sato, and Y. Katsube. 1994. Three-dimensional structures of chimeric enzymes between Bacillus subtilis and Thermus thermophilus 3-isopropylmalate dehydrogenases. Protein Eng. 7(4):453-459.
-
(1994)
Protein Eng.
, vol.7
, Issue.4
, pp. 453-459
-
-
Onodera, K.1
Sakurai, M.2
Moriyama, H.3
Tanaka, N.4
Numata, K.5
Oshima, T.6
Sato, M.7
Katsube, Y.8
-
32
-
-
0001590511
-
Kinetic mechanism and reaction pathway of Thermus thermophilus isopropylmalate dehydrogenase
-
Pirrung, M., H. Han, and D. Nunn. 1994. Kinetic mechanism and reaction pathway of Thermus thermophilus isopropylmalate dehydrogenase. J. Org. Chem. 59:2423-2429.
-
(1994)
J. Org. Chem.
, vol.59
, pp. 2423-2429
-
-
Pirrung, M.1
Han, H.2
Nunn, D.3
-
34
-
-
0003903343
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
-
(1989)
Molecular Cloning: A Laboratory Manual, 2nd Ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
36
-
-
0001351894
-
Rapid attainment of sedimentation equilibrium
-
Van Holde, K. E., and R. L. Baldwin. 1958. Rapid attainment of sedimentation equilibrium. J. Phys. Chem. 62:734-743.
-
(1958)
J. Phys. Chem.
, vol.62
, pp. 734-743
-
-
Van Holde, K.E.1
Baldwin, R.L.2
-
37
-
-
0023388573
-
Purification and properties of NADH dehydrogenase from a thermoacidophilic archaebacterium Sulfolobus acidocaldarius
-
Wakao, H., T. Wakagi, and T. Oshima. 1987. Purification and properties of NADH dehydrogenase from a thermoacidophilic archaebacterium Sulfolobus acidocaldarius. J. Biochem. 102:255-262.
-
(1987)
J. Biochem.
, vol.102
, pp. 255-262
-
-
Wakao, H.1
Wakagi, T.2
Oshima, T.3
-
38
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eukarya
-
Woese, C. R., O. Kandler, and M. L. Wheelis. 1990. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eukarya. Proc. Natl. Acad. Sci. USA 87:4576-4579.
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
39
-
-
0025108577
-
Purification, catalytic properties, and thermal stability of Threo-Ds-3-isopropylmalate dehydrogenase coded by leuB gene from an extreme thermophile, Thermits thermophilus strain HB8
-
Yamada, T., N. Akutsu, K. Miyazaki, K. Kakinuma, M. Yoshida, and T. Oshima. 1990. Purification, catalytic properties, and thermal stability of Threo-Ds-3-isopropylmalate dehydrogenase coded by leuB gene from an extreme thermophile, Thermits thermophilus strain HB8. J. Biochem. 108:449-456.
-
(1990)
J. Biochem.
, vol.108
, pp. 449-456
-
-
Yamada, T.1
Akutsu, N.2
Miyazaki, K.3
Kakinuma, K.4
Yoshida, M.5
Oshima, T.6
-
40
-
-
0029127497
-
Purification and characterization of 3-isopropylmalate dehydrogenase from a thermoacidophilic archaebacterium, Sulfolobus sp. strain 7
-
Yoda, E., Y. Anraku, H. Kirino, T. Wakagi, and T. Oshima. 1995. Purification and characterization of 3-isopropylmalate dehydrogenase from a thermoacidophilic archaebacterium, Sulfolobus sp. strain 7. FEMS Microbiol. Lett. 131:243-247.
-
(1995)
FEMS Microbiol. Lett.
, vol.131
, pp. 243-247
-
-
Yoda, E.1
Anraku, Y.2
Kirino, H.3
Wakagi, T.4
Oshima, T.5
-
41
-
-
0029038005
-
Isocitrate dehydrogenase from bovine heart: Primary structure of subunit 3/4
-
Zeng, Y., C. R. Weiss, C., T. Yao, J. Huang, L. Siconolfi-baez, P. Hsu, and J. L. Rushbrook. 1995. Isocitrate dehydrogenase from bovine heart: primary structure of subunit 3/4. Biochem. J. 310:507-516.
-
(1995)
Biochem. J.
, vol.310
, pp. 507-516
-
-
Zeng, Y.1
Weiss, C.R.2
Yao, C.T.3
Huang, J.4
Siconolfi-baez, L.5
Hsu, P.6
Rushbrook, J.L.7
-
42
-
-
0028901535
-
Modeling substrate binding in Thermus themophilus isopropylmalate dehydrogenase
-
Zhang, T., and D. E. Koshland, Jr. 1995. Modeling substrate binding in Thermus themophilus isopropylmalate dehydrogenase. Protein Sci. 4:84-92.
-
(1995)
Protein Sci.
, vol.4
, pp. 84-92
-
-
Zhang, T.1
Koshland Jr., D.E.2
|