Thermodynamics of dT-dT base pair mismatching in linear DNA duplexes and three-arm DNA junctions

Biochemistry

Volumn 36, Issue 9, 1997, Pages 2485-2491

  Zhong, Min ^a,c   Marky, Luis A ^a   Kallenbach, Neville R ^a   Kupke, Donald W ^b  

^a NEW YORK UNIVERSITY   (United States)

^b UNIVERSITY OF VIRGINIA   (United States)

^c NATIONAL CANCER INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; BASE PAIRING; CALORIMETRY; DENSITOMETRY; DNA DETERMINATION; DNA STRUCTURE; ENTROPY; HYDROPHOBICITY; PRIORITY JOURNAL;

BASE COMPOSITION; DNA; NUCLEIC ACID CONFORMATION; NUCLEIC ACID HETERODUPLEXES; OLIGODEOXYRIBONUCLEOTIDES; THERMODYNAMICS;

EID: 0031036848     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi962373b     Document Type: Article

References (42)

1. Aboul-ela, F., Koh, D., & Tinoco, I., Jr. (1985) Nucleic Acids Res. 13, 4811-4824.
2. Arnold, F. H., Wolk, S., Cruz, P., & Tinoco, I. J. (1987) Biochemistry 26, 4068-75.
3. Cantor, C. R., Warshaw, M. M., & Shapiro, H. (1970) Biopolymers 9, 1059-77.
4. Cheng, J.-W., Chou, S.-H., & Reid, B. R. (1992) J. Mol. Biol. 228, 1037-1041.
5. Churchill, M. E. A., Tullius, T. D., Kallenbach, N. R., & Seeman, N. C. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 4653-4656.
6. Conway, B. E. (1981) in Ionic Hydration in Chemistry, Elsevier, Amsterdam, The Netherlands.
7. Cooper, J. P., & Hagerman, P. J. (1987) J. Mol. Biol. 198, 711-719.
8. Cooper, J. P., & Hagerman, P. J. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 7336-7340.
9. Corsini, J., Afanasiev, B., Maxwell, I. H., & Carlson, J. O. (1996) Adv. Virus Res. 47, 303-351.
10. Duckett, D. R., & Lilley, D. M. J. (1990) EMBO J. 99, 1659-1664.
11. Friedberg, E. C., Walker, G. C., & Siebe, W. (1995) DNA Repair and Mutagenesis, ASM Press, Washington, DC.
12. Gaffney, B., & Jones, R. A. (1989) Biochemistry 28, 5881-5889.
13. Gaillard, C., & Strauss, F. (1994) Science 264, 433-436.
14. Gasan, G. I., Maleev, V. Ya., & Semenov, M. A. (1990) Stud. Biophys. 136, 171-178.
15. Gillies, & Kupke, D. (1988) Rev. Sci. Instrum. 59, 307-313.
16. Guo, Q., Lu, M., Churchill, M. E. A., Tullius, T. D., & Kallenbach, N. R. (1990) Biochemistry 29, 10927-10934.
17. Kallenbach, N. R., & Zhong, M. (1994) Curr. Opin. Struct. Biol. 4, 365-371.
18. Kornberg, A. (1980) DNA Replication, W. H. Freeman, San Francisco.
19. Ladbury, J. E., Sturtevant, J. M., & Leontis, N. B. (1994) Biochemistry 33, 6828-6833.
20. Lu, M., Qiu, G., Wink, D. J., & Kallenbach, N. R. (1990) Nucleic Acids Res. 18, 3333-3337.
21. Lu M., Guo, Q., Marky, L. A., Seeman, N. C., & Kallenbach, N. R. (1992) J. Mol. Biol. 223, 781-789.
22. Lumry R., & Rajender, S. (1970) Biopolymers 9, 1125-227.
23. Marky, L. A., & Kupke, D. W. (1989) Biochemistry 28, 9982-9988.
24. Marky, L. A., Rentzeperis, D., Luneva, N. P., Cosman, M., Geacintov, N. E., & Kupke, D. W. (1996) J. Am. Chem. Soc. 118, 3804-3810.
25. Petruska, J., & Goodman, M. F. (1995) J. Biol. Chem. 270, 746-750.
26. Rentzeperis, D., Kupke, D. W., & Marky, L. A. (1992) Biopolymers 32, 1065-1075.
27. Rentzeperis, D., Kupke, D. W., & Marky, L. A. (1993) Biopolymers 33, 117-125.
28. Rentzeperis, D., Kupke, D. W., & Marky, L. A. (1994) Biochemistry 33, 9588-9591.
29. Rosen, M. A., & Patel, D. J. (1993) Biochemistry 32, 6576-6587.
30. Searle, M. S., and Williams, D. H. (1993) Nucleic Acids Res. 21, 2051-2056.
31. Shlyakhtenko, L. S., Appella, E., Harrington, R. E., Kutyavin, I., & Lyubchenko, Y. L. (1994a) J. Biomol. Struct. Dyn. 12, 131-143.
32. Shlyakhtenko, L. S., Rakesh, D., Lindsay, S. M., Kutyavin, I., Appella, E., Harrington, R. E., & Lyubchenko, Y. L. (1994b) J. Biomol. Struct. Dyn. 11, 1175-1189.
33. Timsit, Y., & Moras, D. (1991) J. Mol. Biol. 221, 919-940.
34. von Kitzing, E., Lilley, D. M. J., & Diekmann, S. (1990) Nucleic Acids Res. 18, 2671-2683.
35. Wells, R. D. (1996) J. Biol. Chem. 271, 2875-2878.
36. Wiseman, T., Williston, S., Brandts, J., & Lin, L. (1989) Anal. Biochem. 179, 131-137.
37. Wu, H.-M., & Crothers, D. M. (1984) Nature 308, 509-513.
38. Zhao, Y., Cheng, W., Gibb, C. L. D., & Kallenbach, N. R. (1996) J. Biomol. Struct. Dyn. 14, 235-238.
39. Zhong, M., Rashes, M. S., & Kallenbach, N. R. (1993) Biochemistry 32, 6898-6907.
40. Zhong, M., Rashes, M. S., Leontis, N. B., & Kallenbach, N. R (1994) Biochemistry 33, 3660-3667.
41. Zhong, M., Rashes, M. S., Marky, L. A., & Kallenbach, N. R. (1992) Biochemistry 31, 8064-8071.
42. Zieba, K., Shu, T. M., Kupke, D. W., & Marky, L. A. (1991) Biochemistry 30, 8018-8026.