4-Hydroxybenzoyl coenzyme A reductase (dehydroxylating) is required for anaerobic degradation of 4-hydroxybenzoate by Rhodopseudomonas palustris and shares features with molybdenum-containing hydroxylases

Journal of Bacteriology

Volumn 179, Issue 3, 1997, Pages 634-642

  Gibson, Jane ^a   Dispensa, Marilyn ^b   Harwood, Caroline S ^b  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITY OF IOWA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

4 HYDROXYBENZOIC ACID; LIGASE; MOLYBDIC ACID; NICOTINE; TUNGSTEN; VANADIC ACID; XANTHINE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM ISOLATION; BINDING SITE; DENITRIFICATION; ENZYME DEGRADATION; GENE EXPRESSION; GROWTH STIMULATION; HYDROXYLATION; OPEN READING FRAME; PRIORITY JOURNAL; RHODOPSEUDOMONAS;

EID: 0031033229     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.179.3.634-642.1997     Document Type: Article

References (51)

1. 2-dependent type. J. Biol. Chem. 265:14170-14175.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.). 1990. Current protocols in molecular biology. Greene Publishing Associates, New York, N.Y.
3. Biegert, T., U. Altenschmidt, C. Eckerskorn, and G. Fuchs. 1993. Enzymes of anaerobic metabolism of phenolic compounds: 4-hydroxybenzoate-CoA ligase from a denitrifying Pseudomonas species. Eur. J. Biochem. 213:555-561.
4. Bonting, C. F. C., and G. Fuchs. 1996. Anaerobic metabolism of 2-hydroxybenzoic acid (salicylic acid) by a denitrifying bacterium. Arch. Microbiol. 165:402-408.
5. Bonting, C. F. C., S. Schneider, G. Schmidtberg, and G. Fuchs. 1995. Anaerobic degradation of m-cresol via methyl oxidation to 3-hydroxybenzoate by a denitrifying bacterium. Arch. Microbiol. 164:63-69.
6. Bossert, I. D., G. Whited, D. T. Gibson, and L. Y. Young. 1989. Anaerobic oxidation of p-crosol mediated by a partially purified methyl-hydroxylase from a denitrifying bacterium. J. Bacteriol. 171:1117-1122.
7. Brackmann, R., and G. Fuchs. 1993. Enzymes of anaerobic metabolism of phenolic compounds. 4-Hydroxybenzoyl-CoA reductase (dehydroxylating) from a denitrifying Pseudomonas species. Eur. J. Biochem. 213:563-571.
8. Buckel, W., and R. Keese. 1995. One electron redox reactions of CoASH esters in anaerobic bacteria - a mechanistic proposal. Angew. Chem. Int. Ed. 34:1502-1506.
9. Cammack, R. 1992. Iron-sulfur clusters in enzymes: themes and variations. Adv. Inorg. Chem. 38:281-322.
10. De Lorenzo, V., I. Cases, M. Herrero, and K. N. Timmis. 1993. Early and late responses of TOL promoters to pathway inducers: identification of postex-ponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters. J. Bacteriol. 175:6902-6907.
11. Dispensa, M., C. T. Thomas, M.-K. Kim, J. A. Perrotta, J. Gibson, and C. S. Harwood. 1992. Anaerobic growth of Rhodopseudomonas palustris on 4-hydroxybenzoate is dependent on AadR, a member of the cyclic AMP receptor protein family of transcriptional regulators. J. Bacteriol. 174:5803-5813.
12. Egland, P. G., J. Gibson, and C. S. Harwood. 1995. Benzoate-coenzyme A ligase, encoded by badA, is one of three ligases able to catalyze benzoylcoenzyme A formation during anaerobic growth of Rhodopseudomonas palustris on benzoate. J. Bacteriol. 177:6545-6551.
13. Egland, P. G., and C. S. Harwood. Unpublished results.
14. Elder, D. J. E., and D. J. Kelly. 1994. The bacterial degradation of benzoic acid and benzenoid compounds under anaerobic conditions: unifying trends and new perspectives. FEMS Microbiol. Rev. 13:441-468.
15. Fuchs, G., M. E.-S. Mohamed, U. Altenschmidt, J. Koch, A. Lack, R. Brackmann, C. Lochmeyer, and B. Oswald. 1994. Biochemistry of anaerobic biodegradation of aromatic compounds, p. 513-553. In C. Ratledge (ed.), Biochemistry of microbial degradation. Kluwer Academic Publishers, Dordrecht, The Netherlands.
16. Gibson, J., M. Dispensa, G. C. Fogg, D. T. Evans, and C. S. Harwood. 1994. 4-Hydroxybenzoate-coenzyme A ligase from Rhodopseudomonas palustris: purification, gene sequence, and role in anaerobic degradation. J. Bacteriol. 176:634-641.
17. Gibson, J., and C. S. Harwood. 1994. Anaerobic utilization of aromatic carboxylates by bacteria, p. 298-313. In R. G. Chaudhry (ed.), Biological degradation and bioremediation of toxic chemicals. Timber Press, Portland, Oreg.
18. Gibson, J., and C. S. Harwood. 1995. Degradation of aromatic compounds by non-sulfur purple bacteria, p. 991-1003. In R. E. Blankenship, M. T. Madigan, and C. E. Bauer (ed.). Anoxygenic photosynthetic bacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
19. Glatigny, A., and C. Scazzocchio. 1995. Cloning and molecular characterization of hxA, the gene coding for the xanthine dehydrogenase (purine hydroxylase I) of Aspergillus nidulans. J. Biol. Chem. 270:3543-3550.
20. Gorny, N., and B. Schink. 1994. Anaerobic degradation of catechol by Desulfobacterium sp. strain Cat2 proceeds via carboxylation to protocatechuate. Appl. Environ. Microbiol. 60:3396-3400.
21. Grether-Beck, S., G. L. Igloi, S. Pust, E. Schilz, K. Decker, and R. Brandsch. 1994. Structural analysis and molybdenum-dependent expression of the pAO1-encoded nicotine dehydrogenase of Arthrobacter nicotinovorans. Mol. Microbiol. 13:929-936.
22. Harayama, S., A. Polissi, and M. Rekik. 1991. Divergent evolution of chloroplast-type ferredoxins. FEBS Lett. 285:85-88.
23. Harwood, C. S., and J. Gibson. 1988. Anaerobic and aerobic metabolism of diverse aromatic compounds by the photosynthetic bacterium Rhodopseudomonas palustris. Appl. Environ. Microbiol. 54:712-717.
24. Hille, R., and T. Nishino. 1995. Xanthine oxidase and xanthine dehydrogenase. FASEB J. 9:995-1003.
25. Hughes, R. K., W. A. Doyle, A. Chovnick, J. R. S. Whittle, J. F. Burke, and R. C. Bray. 1992. Use of rosy mutant strains of Drosophila melanogaster to probe the structure and function of xanthine dehydrogenase. Biochem. J. 285:507-513.
26. Kasmi, E. A., R. Brackmann, G. Fuchs, and S. W. Ragsdale. 1995. Hydroxybenzoyl-CoA reductase: coupling kinetics and electrochemistry to derive enzyme mechanisms. Biochemistry 34:11668-11677.
27. Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene 70:191-197.
28. Keith, T. P., M. A. Riley, M. Kreitman, R. C. Lewontin, D. Curtis, and G. Chambers. 1987. Sequence of the structural gene for xanthine dehydrogenase (rosy locus) in Drosophila melanogaster. Genetics 116:67-73.
29. Kim, M.-K., and C. S, Harwood. 1991. Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris. FEMS Microbiol. Lett. 83:199-204.
30. Kretzer, A., K. Frunkze, and J. R. Andreesen. 1993. Catabolism of isonicotinate by Mycobacterium sp. INA1: extended description of the pathway and purification of the molybdoenzyme isonicotinate dehydrogenase. J. Gen. Microbiol. 139:2763-2772.
31. Lack, A., and G. Fuchs. 1992. Carboxylation of phenylphosphate by phenol carboxylase, an enzyme system of anaerobic phenol metabolism. J. Bacteriol. 174:3629-3636.
32. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
33. Merkel, S. M., A. E. Eberhard, J. Gibson, and C. S. Harwood. 1989. Involvement of coenzyme A thioesters in anaerobic metabolism of 4-hydroxybenzoate by Rhodopseudomonas palustris. J. Bacteriol. 171:1-7.
34. Möller, W., and R. Amons. 1985. Phosphate-binding sequences in nucleotide-binding proteins. FEBS Letters 86:1-7.
35. Ornston, L. N., and R. Y. Stanier. 1966. The conversion of catechol and protocatechuate to β-ketoadipate by Pseudomonas putida. I. Biochemistry. J. Biol. Chem. 241:3776-3786.
36. Parales, R. E., and C. S. Harwood. 1993. Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida. J. Bacteriol. 175:5829-5838.
37. Pearson, D. M., C. O'Reilly, J. Colby, and G. W. Black. 1994. DNA sequence of the cut A, B and C genes, encoding the molybdenum containing hydroxylase carbon monoxide dehydrogenase, from Pseudomonas thermocarboxydovorans strain C2. Biochim. Biophys. Acta 1118:423-428.
38. Perrotta, J. A., and C. S. Harwood. 1994. Anaerobic metabolism of cyclohex-1-ene-1-carboxylate, a proposed intermediate of benzoate degradation, by Rhodopseudomonas palustris. Appl. Environ. Microbiol. 60:1775-1782.
39. Quandt, J., and M. F. Hynes. 1993. Versatile suicide vectors which allow direct selection for gene replacement in gram-negative bacteria. Gene 127: 15-21.
40. Reichenbecher, W., A. Brune, and B. Schink. 1994. Transhydroxylase of Pelobacter acidigallici: a molybdoenzyme catalyzing the conversion of pyrogallol to phloroglucinol. Biochim. Biophys. Acta 1204:217-224.
41. Reichenbecher, W., A. Rudiger, P. M. Kroneck, and B. Schink. 1996. One molecule of molybdopterin guanine dinucleotide is associated with each subunit of the heterodimeric Mo-Fe-S protein transhydroxylase of Pelobacter acidigallici as determined by SDS/PAGE and mass spectrometry. Eur. J. Biochem. 237:406-413.
42. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
43. Schübel, U., M. Kraut, G. Mörsdorf, and O. Meyer. 1995. Molecular cloning of the gene cluster coxMSL encoding molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans. J. Bacteriol. 177:2197-2203.
44. Simon, R., U. Priefer, and A. Pühler. 1983. A broad host range mobilization system for in vivo genetic engineering: transposon mutagenesis in gram-negative bacteria. Bio/Technology 1:784-791.
45. Stewart, V. 1988. Nitrate respiration in relation to facultative metabolism in enterobacteria. Microbiol. Rev. 52:190-232.
46. Studier, F. W., and B. A. Moffatt. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113-130.
47. Tabor, S., and C. C. Richardson. 1985. A bacteriophage T7 RNA polymerase/promoter system for controlled exclusive expression of specific genes. Proc. Natl. Acad. Sci. USA 82:1074-1078.
48. Werth, M. T., G. Cecchini, A. Manodori, B. A. C. Ackrell, I. Schröder, R. P. Gunsalus, and M. K. Johnson. 1990. Site-directed mutagenesis of conserved cysteine residues in Escherichia coli fumarate reductase: modification of the spectroscopic and electrochemical properties of the [2Fe-2S] cluster. Proc. Natl. Acad. Sci. USA 87:8965-8969.
49. Wierenga, R. K., M. C. H. De Maeyer, and W. G. L. Hot. 1985. Interaction of pyrophosphate moieties with α-helixes in dinucleotide binding proteins. Biochemistry 24:1346-1357.
50. Wootton, J. C., R. E. Nicolson, J. M. Cock, D. E. Walters, J. F. Burke, W. A. Doyle, and R. C. Bray. 1991. Enzymes depending on the pterin molybdenum cofactor; sequence families, spectroscopic properties of molybdenum and possible cofactor-binding domains. Biochim. Biophys. Acta 1057:157-165.
51. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains; nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.