Conformation of formacetal and 3'-thioformacetal nucleotide linkers and stability of their antisense RNA·DNA hybrid duplexes

Biochemistry

Volumn 36, Issue 2, 1997, Pages 399-411

  Rice, Jeffrey S ^a   Gao, Xiaolian ^a  

^a University of Houston   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTISENSE OLIGODEOXYNUCLEOTIDE; DNA; RNA;

ABSORPTION SPECTROPHOTOMETRY; ARTICLE; DNA HYBRIDIZATION; DNA SEQUENCE; GENE EXPRESSION REGULATION; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; RNA HYBRIDIZATION; RNA SEQUENCE; TEMPERATURE DEPENDENCE;

EID: 0031027860     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi961760i     Document Type: Article

References (50)

1. Agrawal, S., & Iyer, R. P. (1995) Curr. Opin Biotechnol. 6, 12-19.
2. Beijer B., Sulston, I, Sproat, B. S., Rider, P., Lamond, A. I., & Neuner, P. (1990) Nucleic Acids Res. 18, 5143-5151.
3. Bennett, C. F., Chiang, M. Y., Chan, H., Shoemaker, J. E., & Mirabelli, C. K. (1992) Mol. Pharmacol. 41, 1023-1033.
4. Boelens, R., Vuister, G. W., Koning, T. M. G., & Kaptein, R. (1989) J. Am. Chem. Soc. 111, 8525-8526.
5. Brown, S. C, Thomson, S. A., Veal, J. M., & Davis, D. G. (1994) Science 265, 777-780.
6. Capaldi, D. C., & Reese, C. B. (1994) Nucleic Acids Res. 22, 2209-2216.
7. Ceruzzi, M., Draper, K., & Schwartz, J. (1990) Nucleosides Nucleotides 9, 679-695.
8. Chary, K. V. R., Hosur, R. V., Govil, G., Zu-Kun, T., & Miles, H. T. (1987) Biochemistry 26, 1315-1322.
9. Chiang M. Y., Chan, H., Zounes, M. A., Freier, S. M., Lima, W. F., & Bennett, C. F. (1991) J. Biol. Chem. 266, 18162-18171.
10. Cross, C., Rice, J. S., & Gao, X. (1996) Biochemistry (submitted).
11. Cummins, L., Graff, D., Beaton, G., Marshall, W. S., & Caruthers, M. H. (1996) Biochemistry 35, 8734-8741.
12. Derome, A. E. (1987) Modern NMR Techniques for Chemistry Research, pp 227-230, Pergamon Press, New York.
13. Eriksson, M., & Nielsen, P. E. (1996) Nat. Struct. Biol. 3, 410-411.
14. Freeman, R., Kempsell, S. P., & Levitt, M. H. (1980) J. Magn. Reson. 38, 453-479.
15. Gao, X., & Jeffs, P. W. (1994a) J. Biomol. NMR 4, 17-34.
16. Gao, X., & Jeffs, P. W. (1994b) J. Biomol. NMR 4, 367-384.
17. Gao, X., Brown, F. K., Jeffs, P., Bischofberger, N., Lin, K.-Y., Pipe, A. J., & Noble, S. A. (1992) Biochemistry 31, 6228-6236.
18. Gonzalez, C., Stec, W., Kobylanska, A., Hogrefe FU., Reynolds, M., & James, T. L. (1994) Biochemistry 33, 11062-11072.
19. Gonzalez. C., Stec, W., Reynolds, M. A., & James, T. L. (1995) Biochemistry 34, 4969-4982.
20. Helene, C., & Toulme, J. J. (1990) Biochim. Biophys. Acta 1049, 99-125.
21. Hoke G. D., Draper, K., Freier, S. M., Gonzalez, C., Driver, V., Zounes, M. C., & Ecker, D. J. (1991) Nucleic Acids Res. 19, 5743-5748.
22. Jones, R., Lin, Y.-K., Milligan, J. F., Wadwani, S., & Matteucci, M. D. (1993) J. Org. Chem. 58, 2983-2991.
23. Lesnik, E. A., & Freier, S. M. (1995) Biochemistry 34, 10807-10815.
24. Liebhater, S. A., Russell, J. E., Cash, F. E., & Eshleman S. S. (1992) in Gene Regulation: Biology of Antisense RNA and DNA (Erickson, R. P., & Izant, J. G., Eds.) pp 163, Raven Press, New York.
25. Manoharan, M. (1993) in Antisense Research and Applications (Crooke, S. T., & Lebleu, B., Eds.) pp 303-349, CRC Press, Boca Raton, FL.
26. Marion, D., & Wuthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
27. Matteucci, M. (1990) Tetrahedron Lett. 31, 2385-2388.
28. Minshull, J., & Hunt, T. (1992) in Antisense RNA and DNA (McMurray, J. A. H., Ed.) pp 195, John Wiley and Sons, New York.
29. Nadeau, J. G., & Crothers, D. M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 2622-2626.
30. Nielsen, P. E., Egholm, M., Berg, R. H., & Buchardt, O. (1991) Science 254, 1497-1500.
31. Petersheim, M., & Turner, D. H. (1983) Biochemistry 22, 256-263.
32. Plateau, P., & Gueron, M. (1982) J. Am. Chem. Soc. 104, 7310-7311.
33. Ratmeyer, L., Vinayak, R., Zhong, Y. Y., Zon, G., & Wilson, W. D. (1994) Biochemistry 33, 5298-5304.
34. Reynolds, M. A., Beck, T. A., Say, P. B., Schwartz, D. A., Dwyer, B. P., Daily, W. J., Vaghefi, M. M., Metzler, M. D., Klem, R. E., & Arnold, L. J. (1996) Nucleic Acids Res. 24, 760-765.
35. Salazar, M., Fedoroff, O. Y., Miller, J. M., Ribeiro, N. S., & Reid, B. R. (1993) Biochemistry 32, 4207-4215.
36. Sanghvi, Y. S. (1993) in Antisense Research and Applications (Crooke, S. T., & Lebleu, B., Eds.) pp 273-288, CRC Press, Boca Raton, Florida.
37. Sanghvi, Y. S., & Cook, P. D. (1993) in Nucleosides and Nucleotides as Antitumor and Antiviral Agents (Chu, C. K., & Baker D. C., Eds.) pp 311-324, Plenum Press, New York.
38. Sanghvi, Y. S., & Cook, P. D. (1994) ACS Symp. Ser. 580, 1-22.
39. Shaw, J.-P., Kent, K., Bird, J., Fishback, J., & Froehler, B. (1991) Nucleic Acids Res. 19, 747-750.
40. Shoji, Y., Akhtar, S., Perisamy, A., Herman, B., & Juliano, R. L. (1991) Nucleic Acids Res. 19, 1543-1550.
41. Sinyakov, A. N., Lokhov, S. G., Kutyavin, I. V., Gamper, H. B., & Meyer, R. B., Jr. (1995) J. Am. Chem. Soc. 117, 4995-4996.
42. States, D. J., Haberkorn, R. A., & Ruben, D. J. (1982) J. Magn. Reson. 48, 286-292.
43. Tidd, D. M., & Warenius, H. M. (1989) Br. J. Cancer 60, 343-350.
44. Uhlmann, E., & Peyman, A. (1990) Chem. Rev. 90, 544-584.
45. Vasseur, J.-J., Debart, F., Sanghvi, Y. S., & Cook, P. D. (1992) J. Am. Chem. Soc. 114, 4006-4007.
46. Veal, J. M., & Brown, F. K. (1995) J. Am. Chem. Soc. 117, 1873-1880.
47. Veal, J. M., Gao, X., & Brown, F. K. (1993) J. Am. Chem. Soc. 115, 7139-7145.
48. Wagner, R. W. (1994) Nature 372, 333-335.
49. Woolf T. M., Jennings, C. G. B., Rebagliati, M., & Melton, D. A. (1990) Nucleic Acids Res. 18, 1763-1769.
50. Zamecnik, P. C., & Stephenson, M. L. (1978) Proc. Natl. Acad. Sci. U.S.A. 75, 280-284.