The sequence of a nearly unclonable 22.8 kb segment on the left arm of chromosome VII from Saccharomyces cerevisiae reveals ARO2, RPL9A, TIP1, MRF1 genes and six new open reading frames

Yeast

Volumn 13, Issue 2, 1997, Pages 177-182

  Voet, Marleen ^a   Defoor, Els ^a   Verhasselt, Peter ^a,c   Riles, Linda ^b   Robben, Johan ^a   Volckaert, Guido ^a  

^a LABORATORY OF GENE TECHNOLOGY   (Belgium)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c JANSSEN RESEARCH FOUNDATION   (Belgium)

Author keywords

ARO2; Chromosome VII; Clone instability; Genome sequencing; Long range PCR; MRF1; RPL9A; TIP1; Yeast

Indexed keywords

ARTICLE; CHROMOSOME 7; CONTROLLED STUDY; DNA SEQUENCE; NONHUMAN; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

ARABIDOPSIS PROTEINS; CARRIER PROTEINS; CHROMOSOME MAPPING; CHROMOSOMES, FUNGAL; COSMIDS; FUNGAL PROTEINS; GENES, FUNGAL; GLYCOPROTEINS; LYASES; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHOSPHORUS-OXYGEN LYASES; PLANT PROTEINS; POLYMERASE CHAIN REACTION; RIBOSOMAL PROTEINS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

PAPILLOMAVIRUS; SACCHAROMYCES CEREVISIAE;

EID: 0031027366     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199702)13:2<177::AID-YEA62>3.0.CO;2-2     Document Type: Article

References (16)

1. Huibregtse, J. M., Scheffner, M. and Howley. P. M. (1993). Cloning and expression of the cDNA for E6-AP, a protein that mediates the interaction of the human papillomavirus E6 oncoprotein with p53. Mol. Cell. Biol. 13, 775-784.
2. Imhof, M. O. and McDonnell, D. P. (1996). Yeast RSP5 and its human homolog potentiate hormone-dependent activation of transcription by human progesterone and glucocorticoid receptors. Mol. Cell. Biol. 16, 2594-2605.
3. James, C. M., Indge, K. J. and Oliver, S. G. (1995). DNA sequence analysis of a 35 kb segment from Saccharomyces cerevisiae chromosome VII reveals 19 open reading frames including RAD54, ACE1/CUP2, PMR1, RCK1, AMS1 and CAL1/CDC43. Yeast 11, 1413-1419.
4. Jones, D. G. L., Reusser, U. and Braus, G. H. (1991). Molecular cloning, characterization and analysis of the regulation of the ARO2 gene, encoding chorismate synthase, of Saccharomyces cerevisiae. Mol. Microbiol. 5, 2143-2152.
5. Kalogeropoulos, A. (1995). Automatic intron detection in nuclear DNA sequences of Saccharomyces cerevisiae. Yeast 11, 555-565.
6. Klein, P., Kanehia, M. and Delisi, C. (1985). The detection and classification of membrane-spanning proteins. Biochem. Biophys. Acta 815, 468-476.
7. Marck, C. (1988). 'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers. Nucl. Acids Res. 16, 1829-1836.
8. Nuber, U., Schwarz, S., Kaiser, P., Schneider, R. and Scheffner, M. (1996). Cloning of human ubiquitinconjugating enzymes UbcH6 and UbcH7 (E2-F1) and characterization of their interaction with E6-AP and RSP5. J. Biol. Chem. 271, 2795-2800.
9. Otaka, E., Higo, K. I. and Itoh, T. (1984). Yeast ribosomal proteins. VIII. Isolation of two proteins and sequence characterization of twenty-four proteins from cytoplasmic ribosomes. Mol. Gen. Genet. 195, 544-546.
10. Pearson, W. R. and Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448.
11. Pel, H. J., Maat, C., Rep, M. and Grivell, L. A. (1992). The yeast nuclear gene MRF1 encodes a mitochondrial peptide chain release factor and cures several mitochondrial RNA splicing defects. Nucl. Acids Res. 20, 6339-6346.
12. Sharp, P. M. and Li, Y. (1987). The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucl. Acids Res. 15, 1281-1295.
13. Sweet, D. J. and Pelman, H. R. B. (1993). The TIP1 gene of Saccharomyces cerevisiae encodes an 80 kDa cytoplasmic protein that interacts with the cytoplasmic domain of Sec20p. EMBO J. 12, 2831-2840.
14. Verhasselt, P., Aert, R., Voet, M. and Volckaert, G. (1994a). Nucleotide sequence analysis of an 8887 bp region of the left arm of yeast chromosome XIV, encompassing the centromere sequence. Yeast 10, 945-951.
15. Verhasselt, P., Aert, R., Voet, M. and Volckaert, G. (1994b). Twelve open reading frames revealed in the 23·6 kbp segment flanking the centromere on the Saccharomyces cerevisiae chromosome XIV right arm. Yeast 10, 1355-1361.
16. Verhasselt, P. and Volckaert, G. (1994). Assessment of co-linearity between large cloned DNA fragments and genomic DNA. PCR Methods and Applications 4, 129-132.