Phylogenetic affinity of mitochondria of Euglena gracilis and kinetoplastids using cytochrome oxidase I and hsp60

Journal of Molecular Evolution

Volumn 44, Issue 3, 1997, Pages 341-347

  Yasuhira, Shinji ^a,b   Simpson, Larry ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b TOHOKU UNIVERSITY   (Japan)

Author keywords

Codon usage; Euglena gracilis; Mitochondrial gene; Mitochondrial phylogeny; RNA editing

Indexed keywords

CYTOCHROME C OXIDASE; HEAT SHOCK PROTEIN 60;

ARTICLE; DNA DETERMINATION; EUGLENA GRACILIS; GENE SEQUENCE; KINETOPLAST; MITOCHONDRION; MOLECULAR CLONING; NONHUMAN; PHYLOGENY; RNA ANALYSIS;

ANIMALS; CHAPERONIN 60; CLONING, MOLECULAR; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EUGLENA GRACILIS; KINETOPLASTIDA; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; PHYLOGENY;

EUGLENA GRACILIS; EUGLENIDA; KINETOPLASTIDA; PROTOZOA;

EID: 0031026931     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006152     Document Type: Article

References (36)

1. Adachi J, Hasegawa M (1992) MOLPHY: programs for molecular phylogeny I - PROTML: maximum likelihood inference of protein phylogeny. (Abstract)
2. Angata K, Kuroe K, Yanagisawa K, Tanaka Y (1995) Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3-kb region. Curr Genet 27: 249-256
3. Baldauf SL, Palmer JD (1993) Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc Natl Acad Sci USA 90:11558-11562
4. Blum B, Simpson L (1990) Guide RNAs in kinetoplastid mitochondria have a nonencoded 3′ oligo-(U) tail involved in recognition of the pre-edited region. Cell 62:391-397
5. Chaudhary MF, Merrett MJ (1984) Glycollate-pathway enzymes in mitochondria from phototropic, organotropic and mixotropic cells of Euglena. Planta 162:518-523
6. Clark CG, Martin DS, Diamond LS (1995) Phylogenetic relationships among Anuran trypanosomes as revealed by riboprinting. J Euk Microbiol 42:92-96
7. Cole RA, Williams KL (1994) The Dictyostelium discoideum mitochondrial genome: a primordial system using the universal code and encoding hydrophilic proteins atypical of metazoan mitochondrial DNA. J Mol Evol 39:579-588
8. Crouse E, Vandrey J, Stutz E (1975) Comparative analyses of chloroplast and mitochondrial DNAs from Euglena gracilis. Proc Int Congr Photosynthe, 3rd, pp 1775-1786
9. de la Cruz V, Neckelmann N, Simpson L (1984) Sequences of six structural genes and several open reading frames in the kinetoplast maxicircle DNA of Leishmania tarentolae. J Biol Chem 259: 15136-15147
10. Edwards JBDM, Delort J, Mallet J (1991) Oligodeoxyribonucleotide ligation to single-stranded cDNAs: a new tool for cloning 5′ ends of mRNAs and for constructing cDNA libraries by in vitro amplification. Nucleic Acids Res 19:5227-5232
11. Gibbs SP (1978) The chloroplast of Euglena may have evolved from symbiotic green algae. Can J Bot 56:2883-2889
12. Gott JM, Visomirski LM, Hunter JL (1993) Substitutional and insertional RNA editing of the cytochrome c oxidase subunit 1 mRNA of Physarum polycephalum. J Biol Chem 268:25483-25486
13. Gray MW (1992) The endosymbiont hypothesis revisited. Int Rev Cytol 141:233-377
14. Greenblatt CL, Schiff JA (1959) A pheophytin-like pigment in dark-adapted Euglena gracilis. J Protozool 6:23-28
15. Hallick RB, Hong L, Drager RG, Favreau MR, Monfort A, Orsat B, Spielmann A, Stutz E (1993) Complete sequence of Euglena gracilis chloroplast DNA. Nucleic Acids Res 21:3537-3544
16. Hashimoto T, Nakamura Y, Kamaishi T, Adachi J, Nakamura F, Okamoto K, Hasegawa M (1995) Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor 1 a. Mol Biochem Parasitol 70:181-185
17. Heckman JE, Sarnoff J, Alzner-De Weerd B, Yin S, RajBhandary UL, (1980) Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs. Proc Natl Acad Sci USA 77:3159-3163
18. Henze K, Badr A, Wettern M, Cerff R, Martin W (1995) A nuclear gene of eubacterial origin in Euglena gracilis reflects cryptic endosymbioses during protist evolution. Proc Natl Acad Sci USA 92: 9122-9126
19. Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275-282
20. Kishino H, Miyata T, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J Mol Evol 31:151-160
21. Manning JE, Wolstenholme DR, Ryan RS, Hunter JA, Richards OC (1971) Circular chloroplast DNA from Euglena gracilis. Proc Natl Acad Sci USA 68:1169-1173
22. Martin W, Somerville CC, Loiseaux-de Goer S (1992) Molecular phylogenies of plastid origins and algal evolution. J Mol Evol 35:385-404
23. Maslov DA, Simpson L (1994) RNA editing and mitochondrial genomic organization in the cryptobiid kinetoplastid protozoan, Trypanoplasma borreli. Mol Cell Biol 14:8174-8182
24. Maslov DA, Avila HA, Lake JA, Simpson L (1994) Evolution of RNA editing in kinetoplastid protozoa. Nature 365:345-348
25. Morden CW, Delwiche CF, Kuhsel M, Palmer JD (1992) Gene phylogenies and the endosymbiotic origin of plastids. Biosystems 28: 75-90
26. Nass MMK, Schon L, Ben-Shaul Y, Edelman M (1974) Size and configuration of mitochondrial DNA in Euglena gracilis. Biochim Biophys Acta 374:283-291
27. Nordnes S, Krauss S, Johansen T (1994) cDNA sequence of zebrafish (Brachydanio rerio) translation elongation factor-1 alpha: molecular phytogeny of eukaryotes based on elongation factor-1 alpha protein sequences. Biochim Biophys Acta 1219:529-532
28. Ray DS, Hanawalt PC (1965) Satellite DNA components in Euglena gracilis cells lacking chloroplasts. J Mol Biol 11:760-768
29. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning - a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
30. Simpson L (1979) Isolation of maxicircle component of kinetoplast DNA from hemoflagellate protozoa. Proc Natl Acad Sci USA 76: 1585-1588
31. Simpson L, Maslov DA, Blum B (1993) RNA editing in Leishmania mitochondria. In: Benne R (ed) RNA editing - the alteration of protein coding sequence of RNA. Ellis Horwood, New York, pp 53-85
32. Sogin M, Gunderson J, Elwood H, Alonso R, Peattie D (1989) Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. Science 243:75-77
33. Talen JL, Sanders JPM, Flavell RA (1974) Genetic complexity of mitochondrial DNA from Euglena gracilis. Biochim Biophys Acta 374:129-135
34. Triemer RE, Farmer MA (1991) An ultrastructual comparison of the mitotic apparatus, feeding apparatus, flagellar apparatus and cytoskeleton in euglenoids and kinetoplastids. Protoplasma 164:91-104
35. Viale AM, Arakaki AK (1994) The chaperone connection to the origins of the eukaryotic organelles. FEBS Lett 341:146-151
36. Walne PL, Kivic PA (1989) Phylum euglenida. In: Margulis L, Corliss JO, Melkonian M, Chapman DJ (eds) Handbook of Protoctista. Jones & Bartlett, Boston, pp 270-287