Analysis of a 35.6 kb region on the right arm of Saccharomyces cerevisiae chromosome XV

Yeast

Volumn 13, Issue 1, 1997, Pages 73-83

  Bordonné, Remy ^a   Camasses, Alain ^a   Madania, Ammar ^a   Poch, Olivier ^a   Tarassov, Ivan ^a   Winsor, Barbara ^a   Martin, Robert ^a  

^a INSTITUT DE BIOLOGIE MOLÉCULAIRE ET CELLULAIRE   (France)

Author keywords

Chromosome XV; Genome sequencing; ORFs; Predictable functions; Saccharomyces cerevisiae

Indexed keywords

ARTICLE; CHROMOSOME 15; CONTROLLED STUDY; DATA BASE; DNA SEQUENCE; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

AMINO ACID SEQUENCE; CELL CYCLE PROTEINS; CHROMOSOME MAPPING; CHROMOSOMES, FUNGAL; FUNGAL PROTEINS; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PROTEIN KINASES; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0031020110     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(199701)13:1<73::AID-YEA52>3.0.CO;2-M     Document Type: Article

References (34)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. and Lipman, D. J. (1990). Basic local alignment search tool. J. Mol. Biol. 215, 403-410.
2. Badcock, K. and Churcher, C. M. (1995). Direct submission. Accession Number: Z56276.
3. Bairoch, A. (1993). The PROSITE dictionary of sites and patterns in proteins, its current status. Nucl. Acids Res. 21, 3097-3103.
4. Balzi, E., Wang, M., Leterme, S., Dyck, L. V. and Goffeau, A. (1994). PDR5, a novel yeast multidrug resistance conferring transporter controlled by the transcription regulator PDR1. J. Biol. Chem. 269, 2206-2214.
5. Barrell, B. G., Rajandream, M. A. and Walsh, S. V. (1995). Direct submission. Accession Number: Z56276.
6. Benes, V., Andrade, M. A., Rechmann, S., et al. (1995). Nucleotide sequence and analysis of a 130 kb fragment of yeast chromosome XV. Unpublished. Accession Number: X94335.
7. Bissinger, P. H. and Kuchler, K. (1994). Molecular cloning and expression of the Saccharomyces cerevisiae STS1 gene product. J. Biol. Chem. 269, 4180-4186.
8. Bordonne, R. and Tarassov, I. A. (1996). The yeast SME1 gene encodes the homologue of the human E core protein. Gene, in press.
9. Broach, J. R., Li, Y. Y., Feldman, J., et al. (1982). Localization and sequence analysis of yeast origins of DNA replication. Cold Spring Harbor Symp. Quant. Biol. 47, 1165-1173.
10. Fondrat, C. and Kalogeropoulos, A. (1994). Approaching the function of new genes by detection of their potential upstream activation sequences in Succharomyces cerevisiae: application to chromosome III. Curr. Genet. 25, 396-406.
11. Gottesman, M. M. and Pastan, I. (1993). Biochemistry of multidrug resistance mediated by the multidrug transporter. Annu. Rev. Biochem. 62, 385-427.
12. Haffter, P. and Fox, T. D. (1991). Nucleotide sequence of PUP1 encoding a putative proteasome subunit in Saccharomyces cerevisiae. Nucl. Acids Res. 19, 5075.
13. Haffter, P., McMullin, T. W. and Fox, T. D. (1990). A genetic link between an mRNA-specific translational activator and the translation system in yeast mitochondria. Genetics 125, 495-503.
14. Hirata, D., Yano, K., Miyahara, K. and Miyakawa, T. (1994). Saccharomyces cerevisiae YDR1, which encodes a member of the ATP-binding cassette (ABC) superfamily, is required for multidrug resistance. Curr. Genet. 26, 285-294.
15. Irie, K., Araki, H. and Oshima, Y. (1991). Mutations in a Saccharomyces cerevisiae host showing increased holding stability of the heterologous plasmid pSR1. Mol. Gen. Genet. 225, 257-265.
16. Jacquier, A., Legrain, P. and Dujon, B. (1992). Sequence of a 10·7 kb segment of yeast chromosome XI identifies the APN1 and the BAF1 loci and reveals one tRNA gene and several new open reading frames including homologs to RAD2 and kinases. Yeast 8, 121-132.
17. Johnston, M., Andrews, S., Brinkman, R., et al. (1994). The complete sequence of Saccharomyces cerevisiae chromosome VIII. Science 265, 2077-2082.
18. Kadowaki, T., Chen, S., Hitomi, M., et al. (1994). Isolation and characterization of Saccharomyces cerevisiae mRNA transport-defective (mtr) mutants. J. Cell Biol 126, 649-659.
19. Ledeboer, A. M., Maat, J., Verrips, C. T., Visser, C., Janowicz, Z. A. and Hollenberg, C. P. (1986). Process for preparing a polypeptide by culturing a transformed microorganism, a transformed microorganism suitable therefore and DNA sequences suitable for preparing such microorganism. Patent: EP 0173378-A.
20. Madania, A., Poch, O., Tarassov, I., Winsor, B. and Martin, R. (1996). Analysis of a 22 956 bp region of the right arm of Saccharomyces cerevisiae chromosome XV. Yeast, in press.
21. Maniatis, T., Fritsch, E. F. and Sambrook, J. (1989). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
22. Persson, B. and Argos, P. (1994). Prediction of transmembrane segments in proteins utilising multiple sequence alignments. J. Mol. Biol. 237, 182-192.
23. Riva, M., Carles, C., Sentenac, A., Grachev, M. A., Mustaev, A. A. and Zaychikov, E. F. (1990). Mapping the active site of yeast RNA polymerase B (II). J. Biol. Chem. 265, 16498-16503.
24. Roy, J., Kunghoon. K., Maddock, J. R., Anthony, J. G. and Woolford, J. L. J. (1995). The final stages of spliceosome maturation require Spp2p which physically interacts with DEAH box protein Prp2p and promotes step 1 of splicing. RNA 1, 375-390.
25. Sanchez, C., Blanco, G., Mendez, C. and Salas, J. A. (1995). Direct submission. Accession Number: U43429.
26. Sharp. P. M. and Li, W. H. (1987). The codon adaptation index - a measure of directional synonymous codon usage bias and its potential applications. Nucl. Acids Res. 15, 1281-1295.
27. Shen, W. C. C., Selvakumar, D., Stanford, D. R. and Hopper, A. K. (1993). The Saccharomyces cerevisiae LOS1 gene involved in pre-tRNA splicing encodes a nuclear protein that behaves as a component of the nuclear matrix. J. Biol. Chem. 268, 19436-19444.
28. Stanford, D. R., Kehl, M., Perry, C. A., et al. (1988). The complete primary structure of the human snRNP E protein. Nucl. Acids Res. 16, 10593-10605.
29. Sturrock, S. S. and Collins, J. F. (1993). MPsrch version 1.3. 57eb Site: http://www.ebi.ac.uk/searches/blitzinput.htm1.
30. Sweetser, D., Nonet, M. and Young, R. A. (1987). Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. Proc. Natl. Acad. Sci. USA 84, 1192-1196.
31. Thierry, A. and Dujon, B. (1992). Nested chromosomal fragmentation in yeast using the meganuclease I-SceI: a new method for physical mapping of eukaryotic genomes. Nucl. Acids Res. 20, 5625-5631.
32. Thierry, A., Fairhead, C. and Dujon, B. (1990). The complete sequence of the 8·2 kb segment left of MAT on chromosome III reveals five ORFs, including a gene for a yeast ribokinase. Yeast 6, 521-534.
33. Toda, T., Shimanuki, M., Saka, Y., et al. (1992). Fission yeast pap1-dependent transcription is negatively regulated by an essential nuclear protein, crm1. Mol. Cell. Biol 12, 5474-5484.
34. Virgilio, C. D. and Pringle, J. R. (1995). S. cerevisiae two-hybrid interactor with the C-terminus of Cdc12p. Unpublished. Accession Number: U33152.