Beet soil-borne virus RNA 2: Similarities and dissimilarities to the coat protein gene-carrying RNAs of other furoviruses

Journal of General Virology

Volumn 78, Issue 2, 1997, Pages 469-477

  Koenig, R ^a   Commandeur, U ^a   Loss, S ^a   Beier, C ^a   Kaufmann, A ^a   Lesemann, D E ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COAT PROTEIN; COMPLEMENTARY DNA; VIRUS RNA;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; OPEN READING FRAME; PLANT VIRUS; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; RNA VIRUS; SEQUENCE HOMOLOGY; STOP CODON; VIRUS GENE;

BEET SOIL-BORNE VIRUS; BETA VULGARIS SUBSP. VULGARIS; FUROVIRUS; POTATO MOP-TOP VIRUS; RNA VIRUSES; SOLANUM TUBEROSUM;

EID: 0031017974     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-78-2-469     Document Type: Article

References (26)

1. Bouzoubaa, S., Quillet, L., Guilley, H., Jonard, G. & Richards, K. (1987). Nucleotide sequence of beet necrotic yellow vein virus RNA-1. Journal of General Virology 68, 615-626.
2. Chen, J., MacFarlane, S. A. & Wilson, T. M. A. (1994). Detection and sequence analysis of a spontaneous deletion mutant of soil-borne wheat mosaic virus RNA2 associated with increased symptom severity. Virology 202, 921-929.
3. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analyses for the VAX. Nucleic Acids Research 12, 387-395.
4. Goelet, P., Lomonossoff, G. P., Butler, P. J. G., Akam, M. E., Gait, M. J. & Karn, J. (1982). Nucleotide sequence of tobacco mosaic virus RNA, Proceedings of the National Academy of Sciences, USA 79, 5818-5822.
5. Gustafson, G. & Armour, S. L. (1986). The complete nucleotide sequence of RNAα from the type strain of barley stripe mosaic virus. Nucleic Acids Research 14, 3895-3909.
6. Haeberlé, A. M., Stussi-Garaud, C., Schmitt, C., Garaud, J. C., Richards, K. E., Guilley, H. & Jonard, G. (1994). Detection by immunogold labelling of P75 readthrough protein near an extremity of beet necrotic yellow vein virus particles. Archives of Virology 134, 195-203.
7. Hehn, A., Bouzoubaa, S., Bate, N., Twell, D., Marbach, J., Richards, K., Guilley, H. & Jonard, G. (1995). The small cysteine-rich protein P14 of beet necrotic yellow vein virus regulates accumulation of RNA2 in cis and coat protein in trans. Virology 210, 73-81.
8. Herzog, E., Guilley, H., Manohar, S. K., Dollet, M., Richards, K., Fritsch, C. & Jonard, G. (1994). Complete nucleotide sequence of peanut clump virus RNA 1 and relationships with other fungus-transmitted rod-shaped viruses. Journal of General Virology 75, 3147-3155.
9. Hutchinson, P. J., Henry, C. M. & Coutts, R. H. A. (1992). A comparison, using dsRNA analysis, between beet soil-borne virus and some other tubular viruses isolated from sugar beet. Journal of General Virology 73, 1317-1320.
10. Ivanovic, M., Macfarlane, I. & Wood, R. D. (1983). Viruses of sugarbeet associated with Polymyxa betae. Annual Report of Rothamsted Experimental Station for 1982, pp. 189-190.
11. Kashiwazaki, S., Scott, K. P., Reavy, B. & Harrison, B. D. (1995). Sequence analysis and gene content of potato mop top virus RNA 3: further evidence of heterogeneity in the genome organization of furoviruses. Virology 206, 701-706.
12. Kaufmann, A., Li, Y., Koenig, R., Breyel, E., Maiss, E., Lüddecke, P. & Commandeur, U. (1992). Single- and double-stranded RNAs associated with an isolate of beet soil-borne virus. Intervirology 33, 97-102.
13. Koenig, R., Lüddecke, P. & Haeberlé, A. M. (1995). Detection of beet necrotic yellow vein virus strains, variants and mixed infections by examining single-strand conformation polymorphisms of immunocapture RT-PCR products. Journal of General Virology 76, 2051-2055.
14. Koenig, R., Beier, C., Commandeur, U., Lüth, U., Kaufmann, A. & Lüddecke, P. (1996). Beet soil-borne virus RNA 3 - a further example for the heterogeneity of the gene content of furovirus genomes and of triple gene block-carrying RNAs. Virology 216, 202-207.
15. Koonin, E. V. & Doha, V. V. (1993). Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analaysis of amino acid sequences. Critical Reviews in Biochemistry and Molecular Biology 28, 375-430.
16. Lesemann, D.-E., Koenig, R., Lindsten, K. & Henry, C. M. (1989). Serotypes of beet soil-borne furovirus from FRG and Sweden. Bulletin OEPP/EPPO Bulletin 19, 539-540.
17. Manohar, S. K., Guilley, H., Dollet, M., Richards, K. E. & Jonard, G. (1993). Nucleotide sequence and genetic organization of peanut clump virus RNA 2 and partial characterization of deleted forms. Virology 195, 33-41.
18. Matzura, O. & Wennborg, A. (1996). RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows. Cabios 12, 247-249.
19. Milne, R. G. (1984). Electron microscopy for the identification of plant viruses in in vitro preparations. Methods in Virology 7, 87-120. Edited by K. Maramorosch & H. Koprowski. New York: Academic Press, Inc.
20. Pereira, L. G., Torrance, L., Roberts, I. M. & Harrison, B. D. (1994). Antigenic structure of the coat protein of potato mop-top virus. Virology 203, 277-285.
21. Schmitt, C., Balmori, E., Jonard, G., Richards, K. E. & Guilley, H. (1992). In vitro mutagenesis of biologically active transcripts of beef necrotic yellow vein virus RNA 2: evidence that a domain of the 75-kDa readthrough protein is important for efficient virus assembly. Proceedings of the National Academy of Sciences, USA 89, 5715-5719.
22. Scott, K. P., Kashiwazaki, S., Reavy, B. & Harrison, B. D. (1994). The nucleotide sequence of potato mop-top virus RNA 2: a novel type of genome organization for a furovirus. Journal of General Virology 75, 3561-3568.
23. Shirako, Y. & Wilson, T. M. A. (1993). Complete nucleotide sequence and organization of the bipartite RNA genome of soil-borne wheat mosaic virus. Virology 195, 16-32.
24. Skuzeski, J. M., Nichols, L. M., Gesteland, R. F. & Atkins, J. F. (1991). The signal for a leaky UAG stop codon in several plant viruses includes the two downstream codons. Journal of Molecular Biology 218, 365-373.
25. Tamada, T. & Kusume, T. (1991). Evidence that the 75K readthrough protein of beet necrotic yellow vein virus RNA-2 is essential for transmission by the fungus Polymyxa betae. Journal of General Virology 72, 1497-1504.
26. Tamada, T., Schmitt, C., Saito, M., Guilley, H., Richards, K. & Jonard, G. (1996). High resolution analysis of the readthrough domain of beet necrotic yellow vein virus readthrough protein: a KTER motif is important for efficient transmission of the virus by Polymyxa betae. Journal of General Virology 77, 1359-1367.