Pop3p is essential for the activity of the RNase MRP and RNase P ribonucleoproteins in vivo

EMBO Journal

Volumn 16, Issue 2, 1997, Pages 417-429

  Dichtl, Bernhard ^a   Tollervey, David ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

Author keywords

POP3 gene; RNA processing; RNase MRP; RNase P; Saccharomyces cerevisiae

Indexed keywords

MUTANT PROTEIN; PROTEIN SUBUNIT; RIBONUCLEASE; RIBONUCLEASE P; RIBONUCLEOPROTEIN; TRANSFER RNA;

ALLELE; ARTICLE; CELL VIABILITY; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME STRUCTURE; GENE FUNCTION; GENE ISOLATION; GENE OVEREXPRESSION; IMMUNOPRECIPITATION; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; TEMPERATURE SENSITIVITY;

ALLELES; CELL SURVIVAL; CLONING, MOLECULAR; DNA, FUNGAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENDORIBONUCLEASES; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; MUTAGENESIS; PHENOTYPE; RIBONUCLEASE P; RIBONUCLEOPROTEINS; RNA SPLICING; RNA, BACTERIAL; RNA, CATALYTIC; RNA, FUNGAL; SACCHAROMYCES CEREVISIAE; TEMPERATURE;

ARCHAEA; EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0031017003     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/16.2.417     Document Type: Article

References (69)

1. Altman, S., Kirsebom, L. and Talbot, S. (1993) Recent studies of ribonuclease P. FASEB J., 7, 7-14.
2. Baudin, A., Ozier-Kalogeropoulus, O., Denouel, A., Lacroute, F. and Cullin, C. (1993) A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res., 21, 3329-3330.
3. Bartkiewicz, M., Gold, H. and Altman, S. (1989) Identification and characterization of an RNA molecule that copurifies with RNase P activity from HeLa cells. Genes Dev., 3, 488-499.
4. Beltrame, M. and Tollervey, D. (1992) Identification and functional analysis of two U3 binding sites on yeast pre-ribosomal RNA. EMBO J., 11, 1531-1542.
5. Bennett, J.L., Jeong-Yu, S. and Clayton, D.A. (1992) Characterisation of Xenopus laevis RNase MRP: isolation of the RNA component and its expression during development. J. Biol. Chem., 267, 21765-217.
6. Bergès, T., Petfalski, E., Tollervey, D. and Hurt, E. (1994) Synthetic lethality with fibrillarin identifies Nop77p, a nucleolar protein required for pre-rRNA processing and modification. EMBO J., 13, 3136-3148.
7. Blanton, S., Srinivasan, A. and Rymond, B. (1992) PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels. Mol. Cell. Biol., 9, 3939-3947.
8. Chang, D.D. and Clayton, D.A. (1987) A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication. EMBO J., 6, 409-417.
9. Chang, D.D. and Clayton, D.A. (1989) Mouse RNAase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complemetary to a conserved region of mitochondrial RNA substrate. Cell, 56, 131-139.
10. Chu, S., Archer, R.H., Zengel, J.M. and Lindahl, L. (1994) The RNA of RNase MRP is required for normal processing of ribosomal RNA. Proc. Natl Acad. Sci. USA, 91, 659-663.
11. Dang, Y.L. and Martin, N.C. (1993) Yeast mitochondrial RNase P. Sequence of the RPM2 gene and demonstration that its product is a protein subunit of the enzyme. J. Biol. Chem., 268, 19791-19796.
12. Deutscher, M.P. (1995) tRNA processing nucleases. In Söll, D. and RajBhandary, U. (eds), tRNA: Structure, Biosynthesis and Function. American Society for Microbiology, Washington, DC, pp. 51-56.
13. Doira, M., Carrara, G. and Tocchini-Valentini, G.P. (1991) An RNA molecule copurifies with RNase P activity from Xenopus laevis oocytes. Nucleic Acids Res., 19, 2315-2320.
14. Eichler, D.C. and Craig, N. (1994) Processing of eukaryotic ribosomal RNA. Prog. Nucleic Acids Res. Mol. Biol., 49, 197-239.
15. Forster, A.C. and Altman, S. (1990) Similar cage-shaped structures for the RNA components of all ribonuclease P and ribonuclease MRP enzymes. Cell, 62, 407-409.
16. Gietz, D., St Jean, A., Woods, R.A. and Schiestl, R.H. (1992) Improved method for high efficient transformation of intact yeast cells. Nucleic Acids Res., 20, 1425.
17. Gold, H.A., Craft, J., Hardin, J.A., Bartkiewicz, M. and Altman, S. (1988) Antibodies in human serum that precipitate ribonuclease P. Proc. Natl Acad. Sci. USA, 85, 5483-5487.
18. Gold, H.A., Topper, J.N., Clayton, D.A. and Craft, J. (1989) The RNA processing enzyme RNase MRP is identical to the Th RNP and related to RNase P. Science, 245, 1377-1380.
19. Grandi, P., Doyl, V. and Hurt, E.C. (1993) Purification of NSP1 reveals complex formation with 'GLFG' nucleporins and a novel nuclear pore protein NIC96. EMBO J., 12, 3061-3071.
20. Guarente, L., Yocum, R.R. and Gifford, P. (1982) A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site. Proc. Natl Acad. Sci. USA, 79, 7410-7414.
21. Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N.R. and Altman, S. (1983) The RNA moiety of RNase P is the catalytic subunit of the enzyme. Cell, 35, 849-857.
22. Henry, Y., Wood, H., Morrissey, J.P., Petfalski, E., Kearsey, S. and Tollervey, D. (1994) The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J., 13, 2452-2463.
23. Jansen, R., Tollervey, D. and Hurt, E.C. (1993) A U3 snoRNP protein with homology to splicing factor PRP4 and Gb domains is required for ribosomal RNA processing. EMBO J., 12, 2549-2558.
24. Kiss, T. and Filipowicz, W. (1992) Evidence against the mitochondrial location of the 72/MRP RNA in mammalian cells. Cell, 70, 11-16.
25. Koshland, D., Kent, J.C. and Hartwell, L.H. (1985) Genetic analysis of the mitotic transmission of minichromosomes. Cell, 40, 393-403.
26. Kranz, J.E. and Holm, C. (1990) Cloning by function: an alternative approach for identifying yeast homologs of genes from other organisms. Proc. Natl Acad. Sci. USA, 87, 6629-6633.
27. Krupp, G., Cherayil, B., Frendewey, D., Nishikawa, S. and Söll, D. (1986) Two RNA species co-purify with RNase P from fission yeast Schizosaccharomyces pombe. EMBO J., 5, 1697-1703.
28. Lafontaine, D. and Tollervey, D. (1995) Trans-acting factors in yeast prerRNA and pre-snoRNA processing. Biochem. Cell Biol., 73, 803-812.
29. Lafontaine, D., Vandenhaute, J. and Tollervey, D. (1995) The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast. Genes Dev., 9, 2470-2481.
30. LaGrandeur, T.E., Darr, S.C., Haas, E.S. and Pace, N.R. (1993) Characterization of the RNase P RNA of Sulfolobus acidocaldarius. J. Bacteriol., 175, 5043-5048.
31. Lee, J.Y., Rohlman, C.E., Molony, L.A. and Engelke, D.R. (1991) Characterization of RPR1, an essential gene encoding the RNA component of Saccharomyces cerevisiae RNase P. Mol. Cell. Biol., 11, 721-730.
32. Lindahl, L., Archer, R.H. and Zengal, J.M. (1992) A new rRNA processing mutant of Saccharomyces cerevisiae. Nucleic Acids Res., 20, 295-301.
33. Lorenz, R.T. and Parks, L.W. (1992) Cloning, sequencing, and disruption of the gene encoding sterol C-14 reductase in Saccharomyces cerevisiae. DNA Cell Biol., 11, 685-692.
34. Lygerou, Z., Mitchell, P., Petfalski, E., Séraphin, B. and Tollervey, D. (1994) The POP1 gene encodes a protein component common to the RNase MRP and RNase P ribonucleoproteins. Genes Dev., 8, 1423-1433.
35. Lygerou, Z., Allmang, C., Tollervey, D. and Séraphin, B. (1996a) Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro. Science, 272, 268-272.
36. Lygerou, Z., Pluk, H., van Venrooij, W.J. and Séraphin, B. (1996b) hPOP1: an autoantigenic protein subunit shared by the human RNase P and RNase MRP ribonucleoproteins. EMBO J., 15, 5936-5948.
37. Maniatis, T., Fritsch, E.F. and Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
38. Mattaj, I.W., Boelens, W., Izaurralde, I., Jarmolowski, A. and Kambach, C. (1993) Nucleocytoplasmic transport and snRNP assembly. Mol. Biol. Rep., 18, 79-83.
39. Moore, M.J., Query, C.C. and Sharp, P.A. (1993) Splicing of precursors to mRNAs by the splicesosome. In Gesteland, R.F. and Atkins, J.F. (eds), The RNA World. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 303-357.
40. Morales, M.J., Dang, Y.L., Lou, Y.C., Sulo, P. and Martin, N.C. (1992) A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc. Natl Acad. Sci. USA, 89, 9875-9879.
41. Morrissey, J.P. and Tollervey, D. (1995) Birth of the snoRNPs - the evolution of RNase MRP and the eukaryotic pre-rRNA processing system. Trends Biochem. Sci., 20, 78-82.
42. Nieuwlandt, D.T., Haas, E.S. and Daniels, C.J. (1991 )The RNA component of RNase P from the archaebacterium Haloferax volcanii. J. Biol. Chem., 266, 5689-5695.
43. Paluh, J.L. and Clayton, D. (1995) Schizosaccharomyces pombe RNase MRP RNA is homologous to metazoan RNase MRP RNAs and may provide clues to interrelationships between RNase MRP and RNase P. Yeast, 11, 1249-1264.
44. Potuschak, T., Rossmanith, W. and Karwan, R. (1993) RNase MRP and RNase P share a common substrate. Nucleic Acids Res., 21, 3239-3243.
45. Reimer, G., Raska, I., Tan E.M. and Scheer, U. (1987) Human autoantibodies: probes for nucleolus structure and function. Virchows Arch. Abt. B, 54, 131-143.
46. Riles, L., Dutchik, J.E., Baktha, A., McCauley, B.K., Thayer, E.C., Leckie, M.P., Braden, V.V., Depke, J.E. and Olson, M.V. (1993) Physical map of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs. Genetics, 134, 81-150.
47. Robzyk, K. and Kassir, Y. (1992) A simple and highly efficient procedure for rescuing autonomous plasmids from yeast. Nucleic Acids Res., 20, 3790.
48. Rothstein, R. (1991) Targeting, disruption, replacement and allele rescue: integrative DNA transformation in yeast. Methods Enzymol., 194, 281-301.
49. Schimmang, T., Tollervey, D., Kern, H., Frank, R. and Hurt, E.C. (1989) A yeast nucleolar protein related to mammalian fibrillarin is associated with small nucleolar RNA and is essential for viability EMBO J., 8, 4015-4024.
50. Schmitt, M.E. and Clayton, D.A. (1992) Yeast site-specific ribonucleoprotein endoribonuclease MRP contains an RNA component homologous to mammalian RNase MRP RNA and essential for cell viability. Genes Dev., 6, 1975-1985.
51. Schmitt, M.E. and Clayton, D.A. (1993) Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisae. Mol. Cell. Biol., 13, 7935-7941.
52. Schmitt, M.E. and Clayton, D.A. (1994) Characterization of a unique protein component of yeast RNase MRP: an RNA-binding protein with a zinc-cluster domain. Genes Dev., 8, 2617-2628.
53. Séraphin, B. and Rosbash, M. (1989) Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing. Cell, 59, 349-358.
54. Sherman, F. (1991) Getting started with yeast. Methods Enzymol., 194, 3-21.
55. Shuai, K. and Warner, J.W. (1991) A temperature sensitive mutant of S.cerevisiae defective in pre-rRNA processing. Nucleic Acids Res., 19, 5059-5064.
56. Sikorski, R.S. and Hieter, P. (1989) A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics, 122, 19-27.
57. Stohl, L.L. and Clayton, D.A. (1992) Saccharomyces cerevisiae contains an RNase MRP that cleaves at a conserved mitochondrial RNA sequence implicated in replication priming. Mol. Cell. Biol., 12, 2561-2569.
58. Tollervey, D. (1987) A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J., 6, 4169-4175.
59. Tollervey, D. (1996) Genetic and biochemical analyses of yeast RNase MRP. Mol. Biol. Rep., 22, 75-79.
60. Tollervey, D. and Mattaj, I.W. (1987) Fungal small nuclear ribonucleoproteins share properties with plant and vertebrate U-snRNPs. EMBO J., 6, 469-476.
61. Topper, J.N. and Clayton, D.A. (1990) Characterization of human MRP/Th RNA and its nuclear gene: full length MRP/Th RNA is an active endoribonuclease when assembled as an RNP. Nucleic Acids Res., 18, 793-799.
62. Topper, J.N., Bennett, J.L. and Clayton, D.A. (1992) A role for RNase MRP in mitochondrial RNA processing. Cell, 70, 16-20.
63. Venema, J. and Tollervey, D. (1995) Processing of pre-ribosomal RNA in Saccharomyces cerevisiae. Yeast, 11, 1629-1650.
64. Venema, J. and Tollervey, D. (1996) RRP5 is an essential yeast gene required for formation of both 18S and 5.8S rRNA. EMBO J., 15, 5701-5714.
65. Wahle, E. and Keller, W. (1996) The biochemistry of polyadenylation. Trends Biochem. Sci., 21, 247-250.
66. Westaway, S.K. and Abelson, J. (1995) Splicing of tRNA precursors. In Söll, D. and RajBhandary, U. (eds), tRNA: Structure, Biosynthesis and Function. American Society for Microbiology, Washington, DC, pp. 79-92.
67. Yuan, Y., Singh, R. and Reddy, R. (1989) Rat nucleolar 7-2 RNA is homologous to mouse mitochondrial RNase mitochondrial RNA-processing RNA. J. Biol. Chem., 264, 14835-14839.
68. Yuan, Y., Tan, E. and Reddy, R. (1991) The 40-kilodalton To autoantigen associates with nucleotides 21 to 64 of human mitochondrial RNA processing/7-2 RNA in vitro. Mol. Cell. Biol., 11, 5266-5274.
69. Zimmerly, S., Drainas, D., Sylvers, L.A. and Söll, D. (1993) Identification of a 100-kDa protein associated with nuclear ribonuclease P activity in Schizosaccharomyces pombe. Eur. J. Biochem., 217, 501-507.