Solution structure of an RNA-2'-O-methylated RNA hybrid duplex containing an RNA·DNA hybrid segment at the center

Biochemistry

Volumn 36, Issue 9, 1997, Pages 2577-2585

  Nishizaki, Tomoko ^a   Iwai, Shigenori ^a,b   Ohtsuka, Eiko ^a   Nakamura, Haruki ^b  

^a HOKKAIDO UNIVERSITY   (Japan)

^b BIOMOL ENG RESEARCH INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGORIBONUCLEOTIDE; RIBONUCLEASE H; RNA;

ARTICLE; DNA RNA HYBRIDIZATION; ENZYME SUBSTRATE; ESCHERICHIA COLI; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN TERTIARY STRUCTURE; RNA CONFORMATION; RNA METHYLATION;

CRYSTALLOGRAPHY, X-RAY; DNA; MAGNETIC RESONANCE SPECTROSCOPY; METHYLATION; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HETERODUPLEXES; OLIGONUCLEOTIDES; PROTONS; RNA; SOLUTIONS;

ESCHERICHIA COLI;

EID: 0031016975     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi962297c     Document Type: Article

References (48)

1. Agris, P. F., Koh, H., & Söll, D. (1973) Arch. Biochem. Biophys. 154, 277-283.
2. Arnott, S., & Hukins, D. W. L. (1972) Biochem. Biophys. Res. Commun. 47, 1504-1510.
3. Arnott, S., & Hukins, D. W. L. (1973) J. Mol. Biol. 81, 93-105.
4. Babcock, M., & Olson, W. K. (1994) J. Mol. Biol. 237, 98-124.
5. Blommers, M. J. J., Pieles, U., & Mesmaeker, A. D. (1994) Nucleic Acids Res. 22, 4187-4194.
6. Bobst, A. M., Cerutti, P. A., & Rottman, F. (1969) J. Am. Chem. Soc. 91, 1246-1248.
7. Brünger, A. T. (1993) X-PLOR 3.1: A system for Crystallography and NMR, Yale University Press, New Haven, CT.
8. Crouch, R. J. (1990) New Biol. 2, 771-777.
9. Cummins, L. L., Owens, S. R., Risen, L. M., Lesnik, E. A., Freier, S. M., McGee, D., Guinosso, C. J., & Dan Cook, P. (1995) Nucleic Acids Res. 23, 2019-2024.
10. Edmonds, C. G., Grain, P. F., Hashizume, T., Gupta, R., Stetter, K. O., & McCloskey, J. A. (1987) J. Chem. Soc., Chem. Commun., 909-910.
11. Fedoroff, O. Y., Salazar, M., & Reid, B. R. (1993) J. Mol. Biol. 233, 509-523.
12. Gonzalez, C., Stec, W., Kobylanska, A., Hogrefe, R. I., Reynolds, M., & James, T. L. (1994) Biochemistry 33, 11062-11072.
13. González, C., Stec, W., Reynolds, M. A., & James, T. L. (1995) Biochemistry 34, 4969-4982.
14. Griesinger, C., Sørensen, O. W., & Ernst, R. R. (1986) J. Chem. Phys. 85, 6837-6852.
15. Griesinger, C., Sørensen, O. W., & Ernst, R. R. (1987) J. Magn. Reson. 75, 474-492.
16. Gronenborn, A. M., & Clore, G. M. (1989) Biochemistry 28, 5978-5984.
17. Inoue, H., Hayase, Y., Imura, A., Iwai, S., Miura, K., & Ohtsuka, E. (1987a) Nucleic Acids Res. 15, 6131-6148.
18. Inoue, H., Hayase, Y., Iwai, S., & Ohtsuka, E. (1987b) FEBS Lett. 215, 327-330.
19. Iwai, S., Kataoka, S., Wakasa, M., Ohtsuka, E., & Nakamura, H. (1995) FEBS Lett. 368, 315-320.
20. Iwai, S., Wakasa, M., Ohtsuka, E., Kanaya, S., Kidera, A., & Nakamura, H. (1996) J. Mol. Biol. 263, 699-706.
21. James, T. L. (1991) Curr. Opin. Struct. Biol. 1, 1042-1053.
22. Kanaya, S., & Ikehara, M. (1995) in Subcellular Biochemistry Vol. 24. Proteins: Structure, Function, and Engineering (Biswas, B. B., & Roy, S., Eds.) pp 377-422, Plenum Press, New York.
23. Kawai, G., Yamamoto, Y., Kamimura, T., Masegi, T., Sekine, M., Hata, T., Iimori, T., Watanabe, T., Miyazawa, T., & Yokoyama, S. (1992) Biochemistry 31, 1040-1046.
24. Lamond, A. I., & Sproat, B. S. (1993) FEBS Lett. 325, 123-127.
25. Larrouy, B., Boiziau, C., Sproat, B., & Toulmé, J.-J. (1995) Nucleic Acids Res. 23, 3434-3440.
26. Leslie, A. G. W., & Arnott, S. (1978) J. Mol. Biol. 119, 399-414.
27. Lesnik, E. A., Guinosso, C. J., Kawasaki, A. M., Sasmor, H., Zounes, M., Cummins, L. L., Ecker, D. J., Dan Cook, P., & Freier, S. M. (1993) Biochemistry 32, 7832-7838.
28. Mujeeb, A., Kerwin, S. M., Egan, W., Kenyon, G. L., & James, T. L. (1992) Biochemistry 31, 9325-9338.
29. Nakamura, H., Oda, Y., Iwai, S., Inoue, H., Ohtsuka, E., Kanaya, S., Kimura, S., Katsuda, C., Katayanagi, K., Morikawa, K., Miyashiro, H., & Ikehara, M. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 11535-11539.
30. Nilges, M., Hazabettl, J., Brünger, A. T., & Holak, T. A. (1991) J. Mol. Biol. 219, 499-510.
31. Nishizaki, T., Iwai, S., Ohkubo, T., Kojima, C., Nakamura, H., Kyougoku, Y., & Ohtsuka, E. (1996) Biochemistry 35, 4016-4025.
32. Oda, Y., Iwai, S., Ohtsuka, E., Ishikawa, M., Ikehara, M., & Nakamura, H. (1993) Nucleic Acids Res. 21, 4690-4695.
33. Piantini, U., Sørensen, O. W., & Ernst, R. R. (1982) J. Am. Chem. Soc. 104, 6800-6801.
34. Popenda, M., Milecki, J., Biala, E., & Adamiak, R. W. (1995) Nucleosides Nucleotides 14, 983-984.
35. Rinkel, L. J., & Altona, C. (1987) J. Biomol. Struct. Dyn. 4, 621-649.
36. Salazar, M., Champoux, J. J., & Reid, B. R. (1993a) Biochemistry 32, 739-744.
37. Salazar, M., Fedoroff, O. Y., Miller, J. M., Ribeiro, N. S., & Reid, B. R. (1993b) Biochemistry 32, 4207-4215.
38. Salazar, M., Fedoroff, O. Y., Zhu, L., & Reid, B. R. (1994) J. Mol. Biol. 241, 440-455.
39. Schweitzer, B. I., Mikita, T., Kellog, G. W., Gardner, K. H., & Beardsley, G. P. (1994) Biochemistry 33, 11460-11475.
40. Shaka, A. J., Keeler, J., & Freeman, R. (1983) J. Magn. Reson. 53, 313-340.
41. Shibahara, S., Mukai, S., Nishihara, T., Inoue, H., Ohtsuka, E., & Morisawa, H. (1987) Nucleic Acids Res. 15, 4403.
42. Shinha, N. D., Biernat, J., McMaus, J., & Koster, H. (1984) Nucleic Acids Res. 12, 4539-4557.
43. Skelnár V., Brooks, B. R., Zon, G., & Bax,. A. (1987) FEBS Lett. 216, 249-252.
44. Thomas, P. D., Bauses, V. J., & James, T. L. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 1237-1241.
45. Tidor, B., Irikura, K., Brooks, B. R., & Karpuls, M. (1983) J. Biomol. Struct. Dyn. 1, 231-306.
46. Uchiyama, Y., Miura, Y., Inoue, H., Ohtsuka, E., Ueno, Y., Ikehara, M., & Iwai, S. (1994) J. Mol. Biol. 243, 782-791.
47. Yip, P., & Case, D. A. (1989) J. Magn. Reson. 83, 643-648.
48. Zhu, L., Salazar, M., & Reid, B. R. (1995) Biochemistry 34, 2372-2380.