Fish technology in chromosome and genome research

BioEssays

Volumn 19, Issue 1, 1997, Pages 75-84

  Heng, Henry H Q ^a   Spyropoulos, Barbara ^a   Moens, Peter B ^a  

^a YORK UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0031015360     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.950190112     Document Type: Review

References (80)

1. Gall, J. G., and Pardue, M. L. (1969). Formation and detection of RNA-DNA hybrid molecules in cytological preparations. Proc. Natl Acad. Sci. USA 63, 378-383.
2. Langer, P. R., Waldrop, A. A. and Ward, D. C. (1981). Enzymatic synthesis of biotin-labelled polynucleotides: novel nucleic acid affinity probes. Proc. Natl Acad. Sci. USA 78, 6633-6637.
3. Trask, J. B. (1991). Fluorescence in situ hybridization. Trends Genet. 7, 149-154.
4. Landegent, J. E., Jansen, inde Wal N., Dirks, R. W., Baas, F. and van der Ploeg, M. (1987). Use of whole cosmid cloned genetic sequences for chromosomal localization by non-radioactive in situ hybridization. Hum. Genet. 77, 366-370.
5. Pinkel, D., Landegent, J., Collins, C., Fuscoe, J., Segraves, R., Lucas, J. and Gray, J. (1988). Fluorescence in situ hybridization with human chromosome-specific libraries: detection of trisomy 21 and translocation of chromosome 4. Proc. Natl Acad. Sci. USA 85, 9138-9142.
6. Heng, H. Q., Xiao, H., Shi, X.-M., Greenblatt, J. and Tsui, L.-C. (1994). Genes encoding general initiation factors for RNA polymerase II transcription are dispersed in the human genome. Hum. Mol. Genet. 3, 61-64.
7. Lawrence B. J. (1990). A fluorescence in situ hybridization approach for gene mapping and the study of nuclear organization. In: Genome Analysis, Vol. I: Genetic and Physical Mapping (ed. K. E.. Davies and S. M. Tilghman), pp. 1-38. Cold Spring Harbor.
8. Ledbetter, D. H. (1992). Minireview: Cryptic translocations and telomere integrity. Am. J. Hum. Genet. 51, 451-456.
9. Meltzer, P. S., Guan, X.-Y. and Trent, J. M. (1993). Telomere capture stabilizes chromosome breakage. Nature Genetics 4, 252-255.
10. Carter, N. P. et al. (1992). Reverse chromosome painting: a method for the rapid analysis of aberrant chromosomes in clinical cytogenetics. J. Med. Genet. 29, 299-307.
11. Kallioniemi, A. et al. (1992). Comparative genomic hybridization for molecular cytogenetic analysis of solid tumours. Science 258, 818-821.
12. Ward, B. E. et al. (1993). Rapid prenatal diagnosis of chromosomal aneuploidies by fluorescence in situ hybridization: clinical experience with 4,500 specimens. Am. J. Hum. Genet. 52, 854-865.
13. Goldman, A. S. H. and Hulten, M. A . (1992). Chromosome in situ suppression hybridization in human male meiosis. J. Med. Genet. 29, 98-102.
14. Holmes, J. M. and Martin, R. H. (1993). Aneuploidy detection in human sperm nuclei using fluorescence in situ hybridization. Hum. Genet. 91, 20-24.
15. Lichter, P. et al. (1990). High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247, 64-69.
16. Malaney, S., Heng, H. H. Q., Tsui, L-C., Shi, X. M. and Robinson, B.H. (1996). Localization of the human gene encoding the 13.3-kDa subunit of mitochondrial complex III (UQCRB) to 8q22 by in situ hybridization. Cytogenet. Cell Genet. 73, 297-299.
17. Lichter, P., Boyle, A. L., Cremer, T. and Ward, D. C. (1991). Analysis of genes and chromosomes by nonisotopic in situ hybridization. GATA 8, 24-35.
18. Heng, H. H. Q. and Tsui L.-C. (1993). Modes of DAPI banding and simultaneous in situ hybridization. Chromosoma 102, 325-332.
19. Lichter, P., Bray, P., Ried, T., Dawid, D. and Ward, D. C. (1992). Clustering of C2-H2 zinc finger motif sequences within telomeric regions of human chromosomes. Genomics 13, 999-1007.
20. Trower K. M. et al. (1996). Conservation of synteny between the genome of the pufferfish (Fugu rubripes) and the region on human chromosome 14 (14q24.3) associated with familial Alzheimer disease (AD3 locus). Proc. Natl Acad. Sci. USA. 93, 1366-1369.
21. Heng, H. H. Q., Squire, J. and Tsui, L.-C. (1991). Chromatin mapping - a strategy for physical characterization of the human genome by hybridization in situ. Proc. 8th Internat. Cong. Hum. Genet. Am. J. Hum. Genet. Suppl. p. 368.
22. Heng, H. H. Q., Squire, J. and Tsui, L.-C. (1992). High resolution mapping of mammalian genes by in situ hybridization to free chromatin. Proc. Natl Acad. Sci. USA 89, 9509-9513.
23. Wiegant, J. et al. (1992). High resolution in situ hybridization using DNA halo preparations. Hum. Mol. Genet. 1, 587-592.
24. Inazawa, J., Saito, H., Ariyama, T., Abe, T. and Nakamura, Y. (1993). High-resolution cytogenetic mapping of 342 new cosmid markers including 43 RFLP markers on human chromosome 17 by fluorescence in situ hybridization. Genomics 17, 153-162.
25. Speicher, M. R., Ballard, S. G. and Ward, D. C. (1996). Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nature Genet. 12, 368-375.
26. Bray-Ward, P. et al. (1996). Integration of the cytogenetic, genetic and physical maps of the human genome by FISH mapping of CEPH YAC clones. Genomics 32, 1-14.
27. 2 and early S phase in human lymphocytes. Hum. Genet. 88, 603-608.
28. Kaplan, F. S. et al. (1993). The topographic organization of repetitive DNA in the human nucleolus. Genomics 15, 123-132.
29. 1 interphase nucleus. J. Cell Biol. 130, 1239-1249.
30. Korenberg, J. R. and Rykowski, M. C. (1988). Human genome organization: Alu, lines, and the molecular structure of metaphase chromosome bands. Cell 53, 391-400.
31. Moyzis, R. K. et al. (1989). The distribution of interspersed repetitive DNA sequences in the human genome. Genomics 4, 273-289.
32. Boyle, A. L., Ballard, S. G. and Ward, D. C. (1990). Differential distribution of long and short interspersed element sequences in the mouse genome: Chromosome karyotyping by fluorescence in situ hybridization. Proc. Natl Acad. Sci. USA 87, 7757-7761.
33. Saccone, S., De Sario, A., Della Valle, G. and Bernardi, G. (1992). The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes. Proc. Natl Acad. Sci. USA 89, 4913-4917.
34. Graig, J. M. and Bickmore, W. A. (1994). The distribution of CpG islands in mammalian chromosomes. Nature Genet. 7, 376-382
35. McQueen, H. A. et al. (1996). CpG islands of chicken are concentrated on microchromosomes. Nature Genet. 12, 321-324
36. Baumgartner, M. et al. (1991). Genes occupy a fixed and symmetrical position on sister chromatids. Cell 64, 761-766.
37. Brickmore, W. A. and Oghene, K. (1996). Visualizing the spatial relationship between defined DNA sequences and the axial region of extracted chromosome. Cell 84, 95-104.
38. Moens, P. B. and Pearlman, R. E. (1989). Satellite DNA I in chromatin loops of rat pachytene chromosomes and in spermatids. Chromosoma 98, 287-294.
39. Moens, P. B. and Pearlman, R. E. (1990). Telomere and centromere DNA are associated with the cores of meiotic prophase chromosomes. Chromosoma 100, 8-14.
40. Scherthan, H., Loidl, J., Schuster, T. and Schweizer, D. (1992). Meiotic chromosome condensation and pairing in Saccharomyces cerevisiae studied by chromosome painting. Chromosoma 101, 590-595.
41. Ashley, T., Cacheiro, N. L. A., Russell, L. B. and Ward, D. C. (1993). Molecular characterization of a pericentric inversion in mouse chromosome 8 implicates telomeres as promoters of meiotic recombination. Chromosoma 102, 112-120.
42. Heng H. H. Q., Tsui L.-C. and Moens P. B. (1994). Organization of heterologous DNA inserts on the mouse meiotic chromosome core. Chromosoma 103, 401-407.
43. Greig, G. M. and Willard, H. F. (1991). β-satellite DNA: characterization and localization of two subfamilies from the distal and proximal short arms of the human acrocentric chromosomes. Genomics 12, 573-580.
44. Voullaire, L. E., Slater, H. R., Petrovic, V. and Choo, K. H. A. (1993). A functional marker centromere with no detectable α-satellite, satellite III, or CENP-B protein: activation of a latent centromere? Am. J. Hum. Genet. 52, 1153-1163.
45. Wong, A. K. C., Biddle, F. G. and Rattner, J. B. (1990). The chromosomal distribution of the major and minor satellite is not conserved in the genus Mus. Chromosoma 99, 190-195.
46. Vig, B. K. and Richards, B. T. (1992). Formation of primary constriction and heterochromatin in mouse does not require minor satellite DNA. Exp. Cell Res. 201, 292-298.
47. Chikashige Y. et al. (1994). Telomere-led premeiotic chromosome movement in fission yeast. Science 264, 270-273.
48. Werner, J. E., Kota, R. S. and Gill B. S. (1992). Distribution of telomeric repeats and their role in the healing of broken chromosome ends in wheat. Genome 35, 844-848.
49. Muller, H. J. (1938). The re-making of chromosomes. Collecting Net, Woods Hole 13, 181-195.
50. Walker, C. L., Cargile, C. B., Floy, K. M., Delannoy, M. and Migeon, B. R. (1991). The Barr body is a looped X chromosome formed by telomere association. Proc. Natl Acad. Sci. USA 88, 6191-6195.
51. Heng H. H. Q., Chamberlain W. J., Shi X.-M., Spyropoulos B., Tsui L.-C. and Moens P. B. (1996). Regulation of meiotic chromatin loop size by chromosomal position. Proc. Natl Acad. Sci. USA 93, 2795-2800.
52. Kitsberg, D. et al. (1993). Allele specific replication timing of imprinted gene regions. Nature 364, 459-463.
53. Ferguson, M., Torri, A. F., Ward, D. C. and Englund, P. T. (1992). In situ hybridization to the Crithidia fasciculata kinetoplast reveals two antipodal sites involved in kinetoplast DNA replication. Cell 70, 621-629.
54. Rosenberg C. et al. (1995). High-resolution DNA fibre-FISH on yeast artificial chromosomes: direct visualization of DNA replication. Nature Genet. 10, 477-479
55. Xing, Y., Johnson, C. V., Dobner, P. R. and Lawrence, J. B. (1993). Higher level organization of individual gene transcription and RNA splicing. Science 259, 1326-1330.
56. Carter, K. C. et al. (1993). A three-dimensional view of precursor messenger RNA metabolism within the mammalian nucleus. Science 259, 1330-1334.
57. Yin, Y., Tainsky, M. A., Bischoff, F. Z., Strong, L. C. and Wahl, G. M. (1992). Wild-type p53 restores cell cycle control and inhibits gene amplification in cells with mutant p53 alleles. Cell 70, 937-948.
58. Trask, B. J. and Hamlin, J. L. (1989). Early dihydrofolate reductase gene amplification events in CHO cells usually occur on the same chromosome arm as the original locus. Genes Dev. 3, 1913-1925.
59. Smith, K. A., Gorman, P. A., Stark, M. B., Groves, R. R. and Stark, G. R. (1992). Distinctive chromosomal structures are formed very early in the amplification of CAD genes in Syrian hamster cells. Cell 63, 1219-1227.
60. Ma, C., Martin, S., Trask, B. and Hamlin, J. L. (1993). Sister chromatid fusion initiates amplification of the dihydrofolate reductase gene in Chinese hamster cells. Genes Dev. 7, 605-620.
61. Petronis A. et al. (1996). Direct detection of expanded trinucleotide repeats using PCR and DNA hybridization techniques. Am. J. Med. Genet. 67, 85-91.
62. Taruscio, D. and Manuelidis, L. (1991). Integration site preferences of endogenous retroviruses. Chromosoma 101, 141-156.
63. Haaf, T., Warburton, P. E. and Willard, H. F. (1992). Integration of human α-satellite DNA into simian chromosomes: centromere protein binding and disruption of normal chromosome segregation. Cell 70, 681-696.
64. Brown, K. E., Barentt, M. A., Buckle, V. J. and Brown, W. R. A. (1993). Alphoid DNA is at the functional centromere of the human Y chromosome. Cold Spring Harbor LVIII Symp. Quart. Biol. Abst. pp. 43.
65. Murnane, J. P. and Yu, L.-C. (1993). Acquisition of telomere repeat sequences by transfected DNA integrated at the site of a chromosome break. Mol. Cell Biol. 13, 977-983.
66. Festenstein R. et al. (1996). Locus control region function and heterochromatin-induced position effect variegation. Science 271, 1123-1125.
67. Kubota, S., Kuro-o, M., Mizuno, S. and Kohno, S.-I. (1993). Germ line-restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish (Eptatretus okinoseanus). Chromosoma 102 163-173.
68. Meyne, J. et al. (1990). Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma 99, 3-10.
69. Wienberg, J., Stanyon, R., Jauch, A. and Cremer, T. (1992). Homologies in human and Macaca fuscata chromosomes revealed by in situ suppression hybridization with human chromosome specific DNA libraries. Chromosoma 101, 265-270.
70. Garagna S., Broccoli D., Redi C. A., Searle B. J., Cooke J. H. and Capanna E. (1995). Robertsonian metacentrics of the house mouse lose telomeric sequences but retain some minor satellite DNA in pericentromeric area. Chromosoma 103, 685-692.
71. Baldini, A. et al. (1993). An alphoid DNA sequence conserved in all human and great ape chromosomes: evidence for ancient centromeric sequences at human chromosomal regions 2q21 and 9q13. Hum. Genet. 90, 577-583.
72. Lee, C., Sasi, R. and Lin, C. C. (1993). Interstitial localization of telomeric DNA sequences in the Indian muntjac chromosomes: further evidence for tandem chromosome fusion in the karyotypic evolution of the Asian muntjacs. Cytogenet. Cell Genet. 63, 156-159.
73. Scherthan H. et al. (1994). Comparative chromosome painting discloses homologous segments in distantly related mammals. Nature Genet. 6, 343-347.
74. Bennett M. D. (1995). The development and use of genomic in situ hybridization (GISH) as a new tool in plant cytogenetics. In Key Chromosome Conference IV (ed. P. E. Brandham and M. D. Bennett), pp. 167-183. Royal Botanic Gardens, Kew.
75. Mukai, Y., Nakahara, Y. and Yamamoto, M. (1993). Simultaneous discrimination of the three genomes in hexaploid wheat by multicolour fluorescence In situ hybridization using total genomic and highly repeated DNA probes. Genome 36, 489-494.
76. Jiang J. and Gill, B. S. (1994). Nonisotopic in situ hybridization and plant genome mapping: the first 10 years. Genome 37, 717-725.
77. Heng H. H. Q., Tsui L.-C., Windle B. and Parra I. (1995). High-resolution FISH analysis In Curr. Prot. Hum. Genet. 4.5, 1-26.
78. Wijgerde, M., Grosveld, F. and Fraser, P. (1995). Transcription complex stability and chromatin dynamics in vivo. Nature 377, 209-213.
79. Gerdes M. G., Carter K. C., Moen P. T. and Lawrence J. B. (1994). Dynamic changes in the higher-level chromatin organization of specific sequences revealed by in situ hybridization to nuclear halos. J. Cell Biol. 126, 289-304.
80. Cremer T., Dietze S., Eils R., Lichter P. and Cremer C. (1995). Chromosome territories, nuclear matrix filaments and inter-chromatin channels: a topological view on nuclear architecture and function. In Key Chromosome Conference IV (ed. P. E. Brandham and M. D. Bennett), pp. 63-81. Royal Botanic Gardens, Kew.