Development of a species-specific gene probe for Hyphomicrobium facilis with the inverse PCR

Applied and Environmental Microbiology

Volumn 63, Issue 1, 1997, Pages 335-337

  Fesefeldt, Andreas ^a   Poetsch, Micaela ^a,b   Gliesche, Christian G ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b UNIVERSITY OF GREIFSWALD   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIAL GENE; DNA PROBE; HYPHOMICROBIUM; NONHUMAN; POLYMERASE CHAIN REACTION; SPECIES;

BACTERIA (MICROORGANISMS); HYPHOMICROBIUM; HYPHOMICROBIUM FACILE;

EID: 0031015254     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.1.335-337.1997     Document Type: Article

References (22)

1. Aa, K., and R. A. Olsen. 1996. The use of various substrates and substrate concentrations by a Hyphomicrobium sp. isolated from soil: effect on growth rate and growth yield. Microb. Ecol. 31:67-76.
2. Bertram, S., and H. Gassen. 1991. Gentechnische Methoden. Gustav Fischer Verlag, Stuttgart, Germany.
3. Ely, B. 1985. Vectors for transposon mutagenesis of non-enteric bacteria. Mol. Gen. Genet. 200:302-304.
4. Figurski, D. H., and D. R. Helinski. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. USA 76:1648-1652.
5. Gliesche, C. G., and P. Hirsch. 1992. Mutagenesis and chromosome mobilization in Hyphomicrobium facilis B-522. Can. J. Microbiol. 38:1167-1174.
6. Hanson, R. S. 1992. Introduction, p. 1-21. In J. C. Murrell and H. Dalton (ed.), Methane and methanol utilizers. Plenum Press, New York, N.Y.
7. AL, p. 1897-1904. In J. T. Staley, M. P. Bryant, N. Pfennig, and J. G. Holt (ed.), Bergey's manual of systematic bacteriology, 9th ed., vol. 3. The Williams & Wilkins Company, Baltimore, Md.
8. Hirsch, P., and S. F. Conti. 1964. Biology of budding bacteria. I. Enrichment, isolation and morphology of Hyphomicrobium spp. Arch. Microbiol. 48:339-357.
9. Hirsch, P. R. 1995. Detection of microbial DNA sequences by colony hybridization, p. 2.6.1:1-12. In A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
10. Holm, N. C. 1991. Diversität und Struktur von Hyphomicrobium-Populationen im Plöner Klärwerk und im Kleinen Plöner See. Ph.D. thesis. University of Kiel, Kiel, Germany.
11. Holm, N. C., C. G. Gliesche, and P. Hirsch. 1996. Diversity and structure of Hyphomicrobium populations in a sewage treatment plant and its adjacent receiving lake. Appl. Environ. Microbiol. 62:522-528.
12. Jarrell, K. F., D. Faguy, A. M. Hebert, and L. Kalmokoff. 1992. A general method of isolating high molecular weight DNA from methanogenic archea. Can. J. Microbiol. 38:65-68.
13. Kloos, K., A. Fesefeldt, C. G. Gliesche, and H. Bothe. 1995. DNA-probing indicates the occurrence of denitrification and nitrogen fixation genes in Hyphomicrobium. Distribution of denitrifying and nitrogen fixing isolates of Hyphomicrobium in a sewage treatment plant. FEMS Microbiol. Ecol. 18:205-213.
14. Liessens, J. 1993. Removing nitrate with a methylotrophic fluidized bed: microbiological quality. J. Am. Water Works Assoc. 85:155-161.
15. McDonald, I. R., E. M. Kenna, and J. C. Murrell. 1995. Detection of methanotrophic bacteria in environmental samples with the PCR. Appl. Environ. Microbiol. 61:116-121.
16. Nyberg, U., H. Aspegren, B. Andersson, J. L. Jansen, and I. S. Villadsen. 1992. Full-scale application of nitrogen removal with methanol as carbon source. Water Sci. Technol. 26:1077-1086.
17. Oberzill, W. 1967. Mikrobiologische Analytik. Verlag Hans Carl, Nuremberg, Germany.
18. Poindexter, J. S. 1992. Dimorphic prosthecate bacteria: the genera Caulobacter, Asticcacaulis, Hyphomicrobium, Pedomicrobium, Hyphomonas, and Thiodendron, p. 2176-2196. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer (ed.), The prokaryotes: a handbook on the biology of bacteria: ecophysiology, isolation, identification, applications, 2nd ed. Springer Verlag, New York, N.Y.
19. Rich, J. J., and D. K. Willis. 1990. A single oligonucleotide can be used to rapidly isolate DNA sequences flanking a transposon Tn5 insertion by the polymerase chain reaction. Nucleic Acids Res. 18:6673-6676.
20. Roggentin, T., and P. Hirsch. 1989. Ribosomal RNA cistron similarities among Hyphomicrobium species and several other hyphal, budding bacteria. Syst. Appl. Microbiol. 11:140-147.
21. Stackebrandt, E., R. G. E. Murray, and H. G. Trüper. 1988. Proteobacteria classis nov., a name for the phylogenetic taxon that includes the "purple bacteria and their relatives." Int. J. Syst. Bacteriol. 38:321-325.
22. Urakami, T., J. Sasaki, K.-I. Suzuki, and K. Komagata. 1995, Characterization and description of Hyphomicrobium denitrificans sp. nov. Int. J. Syst. Bacteriol. 45:528-532.