Sequence analysis of the bovine herpesvirus type 1 genes homologous to the DNA polymerase (UL30), the major DNA-binding protein (UL29) and ICP18.5 assembly protein (UL28) genes of herpes simplex virus

Archives of Virology

Volumn 142, Issue 1, 1997, Pages 89-102

  Meyer, G ^a   Vlcek, C ^b   Paces, V ^b   O'Hara, M K ^c   Pastoret, P P ^a   Thiry, E ^a   Schwyzer, M ^d  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b INSTITUTE OF MOLECULAR GENETICS   (Czech Republic)

^c ZOETIS   (United States)

^d UNIVERSITY OF ZURICH   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; DNA DIRECTED DNA POLYMERASE; DNA POLYMERASE, SIMPLEXVIRUS; EXODEOXYRIBONUCLEASE; HERPES SIMPLEX VIRUS TYPE 1 PROTEIN ICP8; ICP18.5 PROTEIN, VIRUS; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CATTLE; GENETICS; HERPES SIMPLEX VIRUS; INFECTIOUS BOVINE RHINOTRACHEITIS VIRUS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS GENE;

AMINO ACID SEQUENCE; ANIMALS; CATTLE; DNA-BINDING PROTEINS; DNA-DIRECTED DNA POLYMERASE; EXODEOXYRIBONUCLEASES; GENES, VIRAL; HERPESVIRUS 1, BOVINE; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY, AMINO ACID; SIMPLEXVIRUS; VIRAL PROTEINS;

ALPHAHERPESVIRINAE; ANIMALIA; BOS TAURUS; BOVINAE; BOVINE HERPESVIRUS 1; BOVINE RHINOTRACHEITIS VIRUS; EQUIDAE; EQUINE HERPESVIRUS 1; HERPES; HERPESVIRIDAE; HERPESVIRUS 1; HUMAN HERPESVIRUS 1; HUMAN HERPESVIRUS 3; SIMPLEXVIRUS; SUID HERPESVIRUS 1; VARICELLOVIRUS;

EID: 0031014662     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050061     Document Type: Article

References (39)

1. Baer R, Bankier AT, Biggin MD, Deininger PL, Farrell PJ, Gibson TJ, Hatfull G, Hudson GS, Satchwell SC, Seguin C, Tufnell PS, Barrell BG (1984) DNA sequence and expression of the B95-8 Epstein-Barr virus genome. Nature 310: 207-211
2. Bandyopadhyay SK, Mittal SK, Field HJ (1990) Identification of the gene homologous to HSV major DNA binding protein in the BHV-1 genome. Vet Microbiol 22: 203-212
3. Breathnach R, Chambon P(1981) Organization and expression of eucaryotic split genes coding for proteins. Annu Rev Biochem 50: 349-383
4. Chee MS, Bankier AT, Beck S, Bohni R, Brown CM, Cerny R, Horsnell T, Hutchison CA, Kouzarides Y, Martignetti JA, Preddie E, Satchwell SC, Tomlinson P, Weston K M, Barrell BG (1990) Analysis of the protein coding content of the sequence of human cytomegalovirus strain AD169. Curr Topics Microbiol Immunol 154: 125-169
5. Davison AJ, Scott JE (1986) The complete DNA sequence of varicella-zoster virus. J Gen Virol 67: 1759-1816
6. Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12: 387-395
7. Digard P, Coen DM (1990) A novel functional domain of an α-like DNA polymerase: the binding site on the herpes simplex virus DNA polymerase for the viral UL42 protein. J Biol Chem 265: 17393-17396
8. Felsenstein J (1989) PHYLIP-Phylogeny inference package (version 3.2). Cladistics 5: 164-166
9. Felsenstein J (1988) Phylogenies from molecular sequences: inference and reliability. Annu Rev Genet 22: 521-565
10. Gibbs JS, Chiou HC, Bastow KF, Cheng Y-C, Coen DM (1988) Identification of amino acids in herpes simplex virus DNA polymerase involved in substrate and drug recognition. Proc Natl Acad Sci USA 85: 6672-6676
11. Holland LE, Sandri-Goldin RM, Goldin AL, Glorioso JC, Levine M (1984) Transcriptional and genetic analysis of the herpes simplex virus type 1 genome: coordinates 0.39 to 0.45. J Virol 49: 947-959
12. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
13. Klupp BG, Kern H, Mettenleiter TC (1992) The virulence-determining genomic BamHI fragment 4 of pseudorabies virus contains genes corresponding to the UL15 (partial), UL18, UL19, UL20 and UL21 genes of herpes simplex virus type 1 (ST strain). Virology 191: 900-908
14. Mayfield JE, Good PJ, VanOort HJ, Campbell AR, Reed DE (1983) Cloning and cleavage site mapping of DNA from bovine herpesvirus 1 (Cooper strain). J Virol 47: 259-264
15. McGeoch DJ, Cook S, Dolan A, Jamieson FE, Telford EAR (1995) Molecular Phylogeny and evolutionary timescale for the family of mammalian herpesvirus. J Mol Biol 247: 443-458
16. McGeoch DJ, Cook S (1994) Molecular phylogeny of the alphaherpesvirinae subfamily and a proposed evolutionary timescale. J Mol Biol 238: 9-22
17. McGeoch DJ, Dalrymple MA, Davison AJ, Dolan A, Frame MC, McNab D, Perry LJ, Scott JE, Taylor P (1988) The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J Gen Virol 69: 1531-1574
18. McLauchlan J, Gaffney D, Whitton JL, Clements JB (1985) The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3′ termini. Nucleic Acids Res 13: 1347-1368
19. Owen LJ, Field HJ (1988) Genomic localization and sequence analysis of the putative bovine herpesvirus-1 DNA polymerase gene. Arch Virol 98: 27-38
20. Pearson WR, Lipman DJ (1988) Improved tools for biological sequence comparisons. Proc Natl Acad Sci USA 85: 2444-2448
21. Pederson NE, Enquist LW (1991) Overexpression in bacteria and identification in infected cells of the pseudorabies virus protein homologous to herpes simplex virus type 1 ICP18.5. J Virol 65: 3746-3758
22. Pederson NE, Enquist LW (1989) The nucleotide sequence of a pseudorabies gene similiar to ICP18.5 of herpes simplex virus type 1. Nucleic Acids Res 17: 3597
23. Quinn JP, McGeoch DJ (1985) DNA sequence of the region in the genome of herpes simplex virus type 1 containing the genes for DNA polymerase and the major DNA binding protein. Nucleic Acids Res 13: 8143-8163
24. Roizman B, Desrosiers RC, Fleckenstein B, Lopez C, Minson AC, Studdert MJ (1992) The family Herpesviridae: an update. Arch Virol 123: 425-449
25. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467
26. Schwyzer M, Styger D, Vogt B, Lowery DE, Simard C, Laboissière S, Misra V, Vlcek C, Paces V (1996) Gene contents in a 31-kb segment at the left genome end of bovine herpesvirus-1. Vet Microbiol (in press)
27. Schwyzer M (1995) Sequence analysis of the bovine herpesvirus 1 genome: An excercise in international cooperation. In: Immunobiology of Viral Infections. Proceedings of the Third Congress of the European Society for Veterinary Virology. Interlaken 1994. Foundation Merieux, Lyon, pp 108-113
28. Seal BS, Irving JM, Whetstone CA (1991) Transcriptional analysis of the bovine herpesvirus 1 cooper isolate. Temporal analysis and characterization of immediateearly, early, and late RNA. Arch Viol 121: 55-73
29. Telford EA, Watson MS, McBridge KE, Davison AJ (1992) The DNA sequence of equine herpesvirus-1. Virology 189: 304-316
30. Tengelsen LA, Pederson NE, Shaver PR, Wathen MW, Homa FL (1993) Herpes simplex virus type 1 DNA cleavage and encapsidation require the product of the UL28 gene: Isolation and characterization of two UL28 deletion mutants. J Virol 67: 3470-3480
31. Tikoo SK, Campos M, Babiuk LA (1995) Bovine herpesvirus 1 (BHV-1): biology, pathogenesis and control. Adv Virus Res 45: 191-223
32. Vlcek C, Paces V (1995) A method for preparing M13 or pUC libraries for sequencing DNA with high G+C or A+T contents. Gene 165: 137-138
33. Vlcek C, Benes V, Lu Z, Kutish GF, Paces V, Rock D, Letchworth GJ, Schwyzer M (1995) Necleotide sequence analysis of a 30-kb region of the bovine herpesvirus 1 genome which exhibits a colinear gene arrangement with the UL21 to UL4 genes of herpes simplex virus. Virology 210: 100-108
34. Wang Y, Hall JD (1990) Characterization of a major DNA-binding domain in the herpes simplex virus type 1 DNA-binding protein (ICP8). J Virol 64: 2082-2089
35. Ward PL, Roizman B (1994) Herpes simplex genes: the blue-print of a successful pathogen. Trends Genet 10: 267-274
36. Whitbeck JC, Bello LJ, Lawrence WC (1988) Comparison of the bovine herpesvirus 1 gl gene and the herpes simplex virus type 1 gB gene. J Virol 62: 3319-3327
37. Wirth UV, Gunkel K, Engels M, Schwyzer M (1989) Spatial and temporal distribution of bovine herpesvirus 1 transcripts. J Virol 63: 4882-4889
38. Wu CA, Nelson NJ, McGeoch DJ, Challberg MD (1988) Identification of herpes simplex virus type 1 genes required for origin-dependent DNA synthesis. J Virol 62: 435-443
39. Wyler R, Engels M, Schwyzer M (1989) Infectious bovine rhinotracheitis/vulvovaginitis (BHV-1). In: Wittmann G (ed) Herpesvirus diseases of cattle, horses and pigs. Developments in veterinary virology. Kluwer, Boston, pp 1-72