-
1
-
-
0000367652
-
The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction
-
BREMER, K. 1988. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803.
-
(1988)
Evolution
, vol.42
, pp. 795-803
-
-
Bremer, K.1
-
2
-
-
0027145271
-
Phylogeny of the Nasonia species complex (Hymenoptera: Pteromalidae) inferred from an internal transcribed spacer (ITS2) and 28S rDNA sequences
-
CAMPBELL, B. C., J. D. STEFFEN-CAMPBELL, and J. H. WERREN. 1993. Phylogeny of the Nasonia species complex (Hymenoptera: Pteromalidae) inferred from an internal transcribed spacer (ITS2) and 28S rDNA sequences. Insect Mol. Biol. 2:225-237.
-
(1993)
Insect Mol. Biol.
, vol.2
, pp. 225-237
-
-
Campbell, B.C.1
Steffen-Campbell, J.D.2
Werren, J.H.3
-
3
-
-
0021759601
-
Xenopus laevis 28S ribosomal RNA: A secondary structure model and functional implications
-
CLARK, C. G., B. W. TAGUE, V. C. WARE, and S. A. GERBI. 1984. Xenopus laevis 28S ribosomal RNA: a secondary structure model and functional implications. Nucleic Acids Res. 12:6197-6220.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 6197-6220
-
-
Clark, C.G.1
Tague, B.W.2
Ware, V.C.3
Gerbi, S.A.4
-
4
-
-
0028325745
-
Mutational processes of simple-sequence repeat loci in human populations
-
DI RIENZO, A., A. C. PETERSON, J. C. GARZA, A. M. VALDES, M. SLATKIN, and N. B. FREIMER. 1994. Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91:3166-3170.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 3166-3170
-
-
Di Rienzo, A.1
Peterson, A.C.2
Garza, J.C.3
Valdes, A.M.4
Slatkin, M.5
Freimer, N.B.6
-
5
-
-
0000878798
-
Phylogenetic relationships of Dipsacales based on rbcL sequences
-
DONOGHUE, M. J., R. G. OLMSTEAD, J. F. SMITH, and J. D. PALMER. 1991. Phylogenetic relationships of Dipsacales based on rbcL sequences. Ann. Mo. Bot. Gard. 79:333-345.
-
(1991)
Ann. Mo. Bot. Gard.
, vol.79
, pp. 333-345
-
-
Donoghue, M.J.1
Olmstead, R.G.2
Smith, J.F.3
Palmer, J.D.4
-
6
-
-
84989432221
-
Testing significance of incongruence
-
FARRIS, J. S., M. KÄLLERSJÖ, A. G. KLUGE, and C. BULT. 1994. Testing significance of incongruence. Cladistics 10:315-320.
-
(1994)
Cladistics
, vol.10
, pp. 315-320
-
-
Farris, J.S.1
Källersjö, M.2
Kluge, A.G.3
Bult, C.4
-
7
-
-
0029053371
-
Trinucleotide repeats that expand in human disease form hairpin structures in vitro
-
GACY, A. A., G. GOELLNER, N. JURANIC, S. MACURA, and C. T. MCMURRAY. 1995. Trinucleotide repeats that expand in human disease form hairpin structures in vitro. Cell 81:533-540.
-
(1995)
Cell
, vol.81
, pp. 533-540
-
-
Gacy, A.A.1
Goellner, G.2
Juranic, N.3
Macura, S.4
Mcmurray, C.T.5
-
8
-
-
0027616543
-
Alignment-ambiguous nucleotide sites and the exclusion of systematic data
-
GATESY, J., R. DESALLE, and W. C. WHEELER. 1993. Alignment-ambiguous nucleotide sites and the exclusion of systematic data. Mol. Phylogenet. Evol. 2:152-157.
-
(1993)
Mol. Phylogenet. Evol.
, vol.2
, pp. 152-157
-
-
Gatesy, J.1
Desalle, R.2
Wheeler, W.C.3
-
10
-
-
0025341183
-
RibosomaJ RNA gene sequences and hominoid phylogeny
-
GONZALEZ, I. L., J. E. SYLVESTER, T. F. SMITH, D. STAMBOLIAN, and R. D. SCHMICKEL. 1990. RibosomaJ RNA gene sequences and hominoid phylogeny. Mol. Biol. Evol. 7: 203-219.
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 203-219
-
-
Gonzalez, I.L.1
Sylvester, J.E.2
Smith, T.F.3
Stambolian, D.4
Schmickel, R.D.5
-
11
-
-
0027445452
-
"Cryptic" repeating triplets of purines and pyrimidines (cRRY(i)) are frequent and polymorphic: Analysis of coding cRRY(i) in the proopiomelanocortin (POMC) and TATA-binding protein (TBP) genes
-
GOSTOUT, B., Q. LIU, and S. S. SOMMER. 1993. "Cryptic" repeating triplets of purines and pyrimidines (cRRY(i)) are frequent and polymorphic: analysis of coding cRRY(i) in the proopiomelanocortin (POMC) and TATA-binding protein (TBP) genes. Am. J. Hum. Genet. 52:1182-1190.
-
(1993)
Am. J. Hum. Genet.
, vol.52
, pp. 1182-1190
-
-
Gostout, B.1
Liu, Q.2
Sommer, S.S.3
-
12
-
-
0027214109
-
Evolution of sequence repetition and gene duplications in the TATA-binding protein TBP (TFIID)
-
HANCOCK, J. M. 1993. Evolution of sequence repetition and gene duplications in the TATA-binding protein TBP (TFIID). Nucleic Acids Res. 21:2823-2830.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 2823-2830
-
-
Hancock, J.M.1
-
13
-
-
0029016238
-
The contribution of DNA slippage to eukaryotic nuclear 18S rRNA evolution
-
_. 1995a. The contribution of DNA slippage to eukaryotic nuclear 18S rRNA evolution. J. Mol. Evol. 40:629-639.
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 629-639
-
-
-
14
-
-
0029597867
-
The contribution of slippage-like processes to genome evolution
-
_. 1995b. The contribution of slippage-like processes to genome evolution. J. Mol. Evol. 41:1038-1047.
-
(1995)
J. Mol. Evol.
, vol.41
, pp. 1038-1047
-
-
-
15
-
-
0028118638
-
SIMPLE34: An improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences
-
HANCOCK, J. M., and J. S. ARMSTRONG. 1994. SIMPLE34: an improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences. Comput. Appl. Biosci. 10:67-70.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 67-70
-
-
Hancock, J.M.1
Armstrong, J.S.2
-
16
-
-
0024043879
-
Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs
-
HANCOCK, J. M., and G. A. DOVER. 1988. Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs. Mol. Biol. Evol. 5:377-391.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 377-391
-
-
Hancock, J.M.1
Dover, G.A.2
-
17
-
-
0024039669
-
Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster
-
HANCOCK, J. M., D. TAUTZ, and G. A. DOVER. 1988. Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster. Mol. Biol. Evol. 5:393-414.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 393-414
-
-
Hancock, J.M.1
Tautz, D.2
Dover, G.A.3
-
18
-
-
0003647239
-
The comparative method in evolutionary biology
-
Oxford University Press, Oxford
-
HARVEY, P. H., and M. D. PAGEL. 1991. The comparative method in evolutionary biology. Oxford series in ecology and evolution. Oxford University Press, Oxford.
-
(1991)
Oxford Series in Ecology and Evolution
-
-
Harvey, P.H.1
Pagel, M.D.2
-
19
-
-
0025924711
-
Comparative methods for explaining adaptations
-
HARVEY, P. H., and A. PURVIS. 1991. Comparative methods for explaining adaptations. Nature 351:619-624.
-
(1991)
Nature
, vol.351
, pp. 619-624
-
-
Harvey, P.H.1
Purvis, A.2
-
20
-
-
0024282469
-
Primary and secondary structure of the 18S ribosomal RNA of the insect species Tenebrio molitor
-
HENDRIKS, L., R. DE BAERE, C. VAN BROEKHOVEN, and R. DE WACHTER. 1988. Primary and secondary structure of the 18S ribosomal RNA of the insect species Tenebrio molitor. FEBS Lett. 232:115-120.
-
(1988)
FEBS Lett.
, vol.232
, pp. 115-120
-
-
Hendriks, L.1
De Baere, R.2
Van Broekhoven, C.3
De Wachter, R.4
-
21
-
-
0027370353
-
Characterization of the patterns of polymorphism in a "cryptic repeat" reveals a novel type of hypervariable sequence
-
JACOBSON, D. P., P. SCHMELING, and S. S. SOMMER. 1993. Characterization of the patterns of polymorphism in a "cryptic repeat" reveals a novel type of hypervariable sequence. Am. J. Hum. Genet. 52:443-450.
-
(1993)
Am. J. Hum. Genet.
, vol.52
, pp. 443-450
-
-
Jacobson, D.P.1
Schmeling, P.2
Sommer, S.S.3
-
22
-
-
0025361553
-
Predicting optimal and suboptimal secondary structure for RNA
-
JAEGER, J. A., D. H. TURNER, and M. ZUKER. 1990. Predicting optimal and suboptimal secondary structure for RNA. Methods Enzymol. 183:281-306.
-
(1990)
Methods Enzymol.
, vol.183
, pp. 281-306
-
-
Jaeger, J.A.1
Turner, D.H.2
Zuker, M.3
-
23
-
-
84959806898
-
A concern for evidence and phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes)
-
KLUGE, A. G. 1989. A concern for evidence and phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38:7-25.
-
(1989)
Syst. Zool.
, vol.38
, pp. 7-25
-
-
Kluge, A.G.1
-
24
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
LEVINSON, G., and G. A. GUTMAN. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
25
-
-
0025753819
-
Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments
-
LINARES, A. R., J. M. HANCOCK, and G. A. DOVER. 1991. Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments. J. Mol. Biol. 219:381-390.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 381-390
-
-
Linares, A.R.1
Hancock, J.M.2
Dover, G.A.3
-
26
-
-
0000147290
-
The implications of congruence in Menidia
-
MICKEVICH, M. F., and J. S. FARRIS. 1981. The implications of congruence in Menidia. Syst. Zool. 30:351-370.
-
(1981)
Syst. Zool.
, vol.30
, pp. 351-370
-
-
Mickevich, M.F.1
Farris, J.S.2
-
27
-
-
0027161934
-
Compilation of small ribosomal subunit RNA sructures
-
NEEFS, J. M., Y. VAN DE PEER, P. DE RIJK, S. CHAPELLE, and R. DE WACHTER. 1993. Compilation of small ribosomal subunit RNA sructures. Nucleic Acids Res. 21:3025-3049.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3025-3049
-
-
Neefs, J.M.1
Van Peer, Y.D.E.2
De Rijk, P.3
Chapelle, S.4
De Wachter, R.5
-
28
-
-
0029923819
-
Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the Crustacean order Isopoda
-
NUNN, G. B., B. F. THEISEN, B. CHRISTENSEN, and P. ARCTANDER. 1996. Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the Crustacean order Isopoda. J. Mol. Evol. 42:211-223.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 211-223
-
-
Nunn, G.B.1
Theisen, B.F.2
Christensen, B.3
Arctander, P.4
-
29
-
-
0003891690
-
-
Cambridge University Press, Cambridge, U.K.
-
PANCHEN, A. L. 1992. Classification, evolution, and the nature of biology. Cambridge University Press, Cambridge, U.K.
-
(1992)
Classification, Evolution, and the Nature of Biology
-
-
Panchen, A.L.1
-
30
-
-
0001930521
-
Morphological characters and homology
-
K. A. JOYSEY and A. E. FRIDAY, eds. Academic Press, London
-
PATTERSON, C. 1982. Morphological characters and homology. Pp. 21-74 in K. A. JOYSEY and A. E. FRIDAY, eds. Problems of phylogeny reconstruction. Academic Press, London.
-
(1982)
Problems of Phylogeny Reconstruction
, pp. 21-74
-
-
Patterson, C.1
-
31
-
-
0027440796
-
Molecular phylogeny of Drosophila based on ribsomal RNA sequences
-
PELANDAKIS, M., and M. SOLIGNAC. 1993. Molecular phylogeny of Drosophila based on ribsomal RNA sequences. J. Mol. Evol. 37:525-543.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 525-543
-
-
Pelandakis, M.1
Solignac, M.2
-
32
-
-
0029007587
-
Comparative analysis by independent contrasts (CAIC): An Apple Macintosh application for analysing comparative data
-
PURVIS, A., and A. RAMBAUT. 1995. Comparative analysis by independent contrasts (CAIC): an Apple Macintosh application for analysing comparative data. Comput. Appl. Biosci. 11:247-251.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 247-251
-
-
Purvis, A.1
Rambaut, A.2
-
33
-
-
0029023463
-
Nonrandom patterns of simple and cryptic triplet repeats in coding and noncoding sequences
-
RICKE, D. O., Q. LIU, B. GOSTOUT, and S. S. SOMMER. 1995. Nonrandom patterns of simple and cryptic triplet repeats in coding and noncoding sequences. Genomics 26:510-520.
-
(1995)
Genomics
, vol.26
, pp. 510-520
-
-
Ricke, D.O.1
Liu, Q.2
Gostout, B.3
Sommer, S.S.4
-
34
-
-
0026080582
-
Segments containing alternating purine and pyrimidine dinucleotides: Patterns of polymorphism in humans and prevalence throughout phylogeny
-
SARKAR, G., C. PAYNTON, and S. S. SOMMER. 1991. Segments containing alternating purine and pyrimidine dinucleotides: patterns of polymorphism in humans and prevalence throughout phylogeny. Nucleic Acids Res. 19:631-636.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 631-636
-
-
Sarkar, G.1
Paynton, C.2
Sommer, S.S.3
-
35
-
-
0026542473
-
Slippage synthesis of simple sequence DNA
-
SCHLÖTTERER, C., and D. TAUTZ. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 211-215
-
-
Schlötterer, C.1
Tautz, D.2
-
36
-
-
0017294484
-
Evolution of repeated DNA sequences by unequal crossover
-
SMITH, G. P. 1976. Evolution of repeated DNA sequences by unequal crossover. Science 191:528-535.
-
(1976)
Science
, vol.191
, pp. 528-535
-
-
Smith, G.P.1
-
37
-
-
0028178111
-
"Cryptic" dinucleotide polymorphism in the 3′ region of the factor IX gene shows substantial variation among different populations
-
SOMMER, S. S., V. L. TILLOTSON, E. L. VIELHABER, R. P. KETTERLING, and C. M. DUTTON. 1994. "Cryptic" dinucleotide polymorphism in the 3′ region of the factor IX gene shows substantial variation among different populations. Hum. Genet. 93:357-358.
-
(1994)
Hum. Genet.
, vol.93
, pp. 357-358
-
-
Sommer, S.S.1
Tillotson, V.L.2
Vielhaber, E.L.3
Ketterling, R.P.4
Dutton, C.M.5
-
39
-
-
0024043089
-
Complete sequence of the rRNA genes of Drosophila melanogaster
-
TAUTZ, D., J. M. HANCOCK, D. A. WEBB, C. TAUTZ, and G. A. DOVER. 1988. Complete sequence of the rRNA genes of Drosophila melanogaster. Mol. Biol. Evol. 5:366-376.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 366-376
-
-
Tautz, D.1
Hancock, J.M.2
Webb, D.A.3
Tautz, C.4
Dover, G.A.5
-
40
-
-
0022533981
-
Cryptic simplicity in DNA is a major source of genetic variation
-
TAUTZ, D., M. TRICK, and G. A. DOVER. 1986. Cryptic simplicity in DNA is a major source of genetic variation. Nature 322:652-656.
-
(1986)
Nature
, vol.322
, pp. 652-656
-
-
Tautz, D.1
Trick, M.2
Dover, G.A.3
-
41
-
-
0024002776
-
Use of chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA
-
TONEGUZZO, F., S. GLYNN, E. LEVI, S. MJOLSNESS, and A. HAYDAY. 1988. Use of chemically modified T7 DNA polymerase for manual and automated sequencing of supercoiled DNA. Biotechniques 6:460-469.
-
(1988)
Biotechniques
, vol.6
, pp. 460-469
-
-
Toneguzzo, F.1
Glynn, S.2
Levi, E.3
Mjolsness, S.4
Hayday, A.5
-
42
-
-
0027474097
-
Allele frequencies at microsatellite loci: The stepwise mutation model revisited
-
VALUES, A. M., M. SLATKIN, and N. B. FREIMER. 1993. Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133:737-749.
-
(1993)
Genetics
, vol.133
, pp. 737-749
-
-
Values, A.M.1
Slatkin, M.2
Freimer, N.B.3
-
43
-
-
0030333422
-
A molecular phylogeny of the tiger beetles (Cicindelidae): Congruence of mitochondrial and nuclear rDNA data sets
-
in press
-
VOGLER, A. P., and D. L. PEARSON. 1996. A molecular phylogeny of the tiger beetles (Cicindelidae): Congruence of mitochondrial and nuclear rDNA data sets. Mol. Phylogenet. Evol. 6. (in press).
-
(1996)
Mol. Phylogenet. Evol.
, vol.6
-
-
Vogler, A.P.1
Pearson, D.L.2
-
44
-
-
0028878618
-
Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data
-
WHEELER, W. C. 1995. Sequence alignment, parameter sensitivity, and the phylogenetic analysis of molecular data. Syst. Biol. 44:321-331.
-
(1995)
Syst. Biol.
, vol.44
, pp. 321-331
-
-
Wheeler, W.C.1
-
45
-
-
0028087774
-
MALIGN: A multiple sequence alignment program
-
WHEELER, W. C., and D. S. GLADSTEIN. 1994. MALIGN: a multiple sequence alignment program. J. Hered. 85:417-418.
-
(1994)
J. Hered.
, vol.85
, pp. 417-418
-
-
Wheeler, W.C.1
Gladstein, D.S.2
-
46
-
-
0000790740
-
Cladistic relationships among higher groups of Heteroptera: Congruence between morphological and molecular data sets
-
WHEELER, W. C., R. T. SCHUH, and R. BANG. 1993. Cladistic relationships among higher groups of Heteroptera: congruence between morphological and molecular data sets. Entomol. Scand. 24:121-138.
-
(1993)
Entomol. Scand.
, vol.24
, pp. 121-138
-
-
Wheeler, W.C.1
Schuh, R.T.2
Bang, R.3
-
47
-
-
0024477261
-
On finding all suboptimal foldings of an RNA molecule
-
ZUKER, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
-
(1989)
Science
, vol.244
, pp. 48-52
-
-
Zuker, M.1
-
48
-
-
0028249154
-
Prediction of RNA secondary structure by energy minimization
-
_. 1994. Prediction of RNA secondary structure by energy minimization. Methods Mol. Biol. 25:267-294.
-
(1994)
Methods Mol. Biol.
, vol.25
, pp. 267-294
-
-
-
49
-
-
0025731211
-
A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison
-
ZUKER, M., J. A. JAEGER, and D. H. TURNER. 1991. A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acids Res. 19:2707-2714.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 2707-2714
-
-
Zuker, M.1
Jaeger, J.A.2
Turner, D.H.3
|