Intra- and intermolecular cooperative binding of high-mobility-group protein I(Y) to the beta-interferon promoter

Molecular and Cellular Biology

Volumn 17, Issue 7, 1997, Pages 3649-3662

  Yie, Junming ^a   Liang, Stanley ^a   Merika, Menie ^a   Thanos, Dimitris ^a  

^a Columbia University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BETA INTERFERON;

ANIMAL CELL; ARTICLE; BASE PAIRING; BINDING AFFINITY; DNA BINDING; DNA FOOTPRINTING; DNA HELIX; DNA STRUCTURE; ENHANCER REGION; METHYLATION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN PROTEIN INTERACTION; TRANSCRIPTION REGULATION;

ANIMALIA; EUKARYOTA; MAMMALIA;

EID: 0030998258     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.7.3649     Document Type: Article

References (48)

1. Abdulkandir, S. A., S. Krishna, D. Thanos, T. Maniatis, J. L. Strominger, and S. J. Ono. 1995. Functional roles of the high mobility group protein HMG I(Y) and Oct-2A in transcriptional regulation of the HLA-DRA gene: distinct paradigms for transcription complex assembly. J. Exp. Med. 182:487-500.
2. Ashar, H. R., M. S. Fejzo, A. Tkachenko, X. Zhou, J. A. Fletcher, S. Weremowicz, C. C. Morton, and K. Chada. 1995. Disruption of the architectural factor HMG I-C: DNA binding AT hook motifs fused in lipomas to distinct transcriptional regulatory domains. Cell 82:57-65.
3. Ashley, C. T., C. G. Pendleton, W. Wesley-Jennings, A. Saxena, and C. V. C. Glover. 1989. Isolation and sequencing of cDNA clones encoding Drosophila chromosomal protein D1. J. Biol. Chem. 264:8394-8401.
4. Brown, M. T., L. Goetsch, and L. H. Hartwell. 1993. MIF2 is required for mitotic spindle integrity during anaphase spindle elongation in Saccharomyces cerevisiae. J. Cell Biol. 123:387-403.
5. Bustin, M., D. A. Lehn, and D. Landsman. 1990. Structural features of the HMG chromosomal proteins and their genes. Biochim. Biophys. Acta 1049: 231-243.
6. Churchill, M. E. A., and A. A. Travers. 1991. Protein motifs that recognize structural features of DNA. Trends Biochem. Sci. 16:92-97.
7. Claus, P., E. Schulze, and J. R. Wisniewski. 1994. Insect proteins homologous to mammalian high mobility group proteins I/Y (HMG I/Y). Characterization and binding to linear and four-way junction DNA. J. Biol. Chem. 269:33042-33048.
8. Du, W., and T. Maniatis. 1992. An ATF/CREB binding site is required for virus induction of the human IFN-β gene. Proc. Natl. Acad. Sci. USA 89:2150-2154.
9. Du, W., D. Thanos, and T. Maniatis. 1993. Mechanisms of transcriptional synergism between distinct virus-inducible enhancer elements. Cell 74:887-898.
10. Falvo, J. V., D. Thanos, and T. Maniatis. 1995. Reversal of intrinsic DNA bends in the IFNβ gene enhancer by transcription factors and the architectural protein HMG I(Y). Cell 83:1101-1111.
11. Farnet, C. M., and F. D. Bushman. 1997. HIV-I cDNA integration: requirement of HMG I(Y) protein for function of preintegration complexes in vitro. Cell 88:483-492.
12. French, S. W., M. C. Schmidt, and J. C. Glorioso. 1996. Involvement of a high-mobility-group protein in the transcriptional activity of herpes simplex virus latency-active promoter 2. Mol. Cell. Biol. 16:5393-5399.
13. Geierstanger, B. H., B. F. Volkman, W. Kremer, and D. E. Wemmer. 1994. Short peptide fragments derived from HMG I/Y bind specifically to the minor groove of DNA. Biochemistry 33:5347-5355.
14. Giese, K., C. Kingsley, J. R. Kirshner, and R. Grosschedl. 1995. Assembly and function of a TCRα enhancer complex is dependent on LEF-1 induced DNA bending and multiple protein-protein interactions. Genes Dev. 9:995-1008.
15. Goodburn, S. E. Y., and T. Maniatis. 1988. Overlapping positive and negative regulatory elements of the human β-interferon gene. Proc. Natl. Acad. Sci. USA 85:1447-1451.
16. Grosschedl, R. 1995. Higher order nucleoprotein complexes in transcription: analogies with site specific recombination. Curr. Opin. Cell Biol. 7:362-370.
17. Grosschedl, R., K. Giese, and J. Pagel. 1994. HMG domain proteins: architectural elements in the assembly of nucleoprotein complexes. Trends Genet. 10:94-100.
18. Gu, Y., T. Nakamura, H. Alder, R. Prasad, O. Canaani, G. Cimino, C. M. Croce, and E. Canaani. 1992. The t(4;11) chromosome translocation of human acute leukemias fuses the ALL-1 gene, related to Drosophila trithorax, to the AF-4 gene. Cell 71:691-700.
19. Himes, S. R., L. S. Coles, R. Reeves, and M. F. Shannon. 1996. High Mobility Group protein I(Y) is required for function and for c-rel binding to CD28 response elements within the GM-CSF and IL-2 promoters. Immunity 5:479-489.
20. John, S., R. Reeves, J. Lin, R. Child, J. Leiden, C. B. Thompson, and W. J. Leonard. 1995. Regulation of cell-type-specific interleukin-2 receptor α-chain gene expression: potential role of physical interactions between Elf-1, HMG I(Y), and NF-κB family proteins. Mol. Cell. Biol. 15:1786-1796.
21. Johnson, K. R., D. A. Lehn, T. S. Elton, P. J. Barr, and R. Reeves. 1988. Complete murine cDNA sequence, genomic structure, and tissue expression of the high mobility group protein HMG I(Y). J. Biol. Chem. 263:18338-18342.
22. Krasnow, M. A., E. E. Saffman, K. Kornfeld, and D. S. Hogness. 1989. Transcriptional activation and repression by ultrabithorax proteins in cultured Drosophila cells. Cell 57:1031-1043.
23. Leger, H., E. Sock, K. Renner, F. Grummt, and M. Wegner. 1995. Functional interaction between the POU domain protein Tst/Oct-6 and the high-mobility-group protein HMG I(Y). Mol. Cell. Biol. 15:3738-3747.
24. Lewis, H., W. Kaszubska, J. F. DeLamarter, and J. Whelan. 1994. Cooperativity between two NF-κB complexes mediated by high-mobility-group I(Y) protein is essential for cytokine-induced expression of the E-selectin promoter. Mol. Cell. Biol. 14:5701-5709.
25. Maher, J. F., and D. Nathans. 1996. Multivalent DNA-binding properties of the HMG-I proteins. Proc. Natl. Acad. Sci. USA 93:6716-6720.
26. Manfioletti, G., V. Giancotti, A. Bandiera, E. Buratti, P. Sautiere, P. Cary, C. Crane-Robinson, B. Coles, and G. H. Goodwin. 1991. cDNA cloning of the HMG I-C phosphoprotein, a nuclear protein associated with neoplastic and undifferentiated phenotypes. Nucleic Acids Res. 19:6793-6797.
27. Meacock, S., R. Pescini-Gobert, J. F. DeLamarter, and R. H. van Huijsduijnen. 1994. Transcription factor-induced, phased bending of the E-selectin promoter. J. Biol. Chem. 269:31756-31762.
28. Nicolz-Argudo, R. M. Ruiz-Vazquez, and F. J. Murillo. 1996. High mobility group I(Y)-like DNA-binding domains on a bacterial transcription factor. Proc. Natl. Acad. Sci. USA 93:6881-6885.
29. Nieto-Sotelo, J., A. Ichida, and P. H. Quail. 1994. PF1: an A-T hook-containing DNA binding protein from rice that interacts with a functionally defined d(AT)-rich element in the oat phytochrome A3 gene promoter. Plant Cell 6:287-301.
30. Nissen, M. S., and R. Reeves. 1995. Changes in superhelicity are introduced into closed circular DNA by binding of high mobility group protein HMG I(Y). J. Biol. Chem. 270:4355-4360.
31. Palvimo, J., and A. Linnala-Kankkunen. 1989. Identification of sites on chromosomal protein HMG I phosphorylated by casein kinase II. FEBS Lett. 257:101-104.
32. Pwee, K. H., C. I. Webster, and J. C. Gray. 1994. HMG protein binding to an A/T-rich positive regulatory region of the pea plastocyanin gene promoter. Plant Mol. Biol. 26:1907-1920.
33. Reeves, R., and M. S. Nissen. 1990. The AT-DNA-binding domain of mammalian high mobility group I chromosomal proteins. J. Biol. Chem. 265: 8573-8582.
34. Schoenmakers, E. F. P. M., S. Wanschura, R. Mols, J. Bullerdiek, H. V. Berghe, and W. J. M. Van de Ven. 1995. Recurrent rearrangements in the high mobility group protein gene. HMG I-C, in benign mesenchymal tumors. Nature Genet. 10:436-444.
35. Solomon, M. J., F. Strauss, and A. Varshavsky. 1986. A mammalian high mobility group protein recognizes any stretch of six A · T base pairs in duplex DNA. Proc. Natl. Acad. Sci. USA 83:1276-1280.
36. Strick, R., and U. K. Laemmli. 1995. SARs are cis DNA elements of chromosome dynamics: synthesis of a SAR repressor protein. Cell 83:1137-1148.
37. Thanos, D., and T. Maniatis. 1992. The high mobility group protein HMG I(Y) is required for NF-κB dependent virus induction of the human IFN-β gene. Cell 71:777-789.
38. Thanos, D., W. Du, and T. Maniatis. 1993. The high mobility group protein HMG I(Y) is an essential structural component of a virus inducible enhancer complex. Cold Spring Harbor Symp. Quant. Biol. 58:73-81.
39. Thanos, D., and T. Maniatis. 1995. Virus induction of human IFNβ gene expression requires the assembly of an enhanceosome. Cell 83:1091-1100
40. Thanos, D., and T. Maniatis. 1996. In vitro assembly of enhancer complexes Methods Enzymol. 274:162-173.
41. Tkachuk, D. C., S. Kohler, and M. L. Cleary. 1992. Involvement of a homolog of Drosophila trithorax by 11q23 chromosomal translocations in acute leukemias. Cell 71:691-700.
42. Wang, D.-Z., P. Ray, and M. Boothby. 1995. Interleukin 4-inducible phosphorylation of HMG I(Y) is inhibited by rapamycin. J. Biol. Chem 270: 22924-22932.
43. Whitley, M. Z., D. Thanos, M. A. Read, T. Maniatis, and T. Collins. 1994. A striking similarity in the organization of the E-selectin and beta interferon gene promoters. Mol. Cell. Biol. 14:6464-6475.
44. Winter, E., and A. Varshavsky. 1989. A DNA binding protein that recognizes oligo(dA) · oligo(dT) tracts. EMBO J. 8:1867-1877.
45. Wolffe, A. P. 1994. Architectural transcription factors. Science 264:1100-1101.
46. Wood, L. D., A. A. Farmer, and A. Richmond. 1995. HMG I(Y) and Sp1 in addition to NF-κB regulate transcription of the MGSA/GROα gene. Nucleic Acids Res. 23:4210-4219.
47. Zhao, K., E. Kas, E. Gonzalez, and U. K. Laemmli. 1993. SAR-dependent mobilization of histone H1 by HMG I(Y) in vitro: HMG I(Y) is enriched in H1-depleted chromatin. EMBO J. 12:3237-3247.
48. Zhou, X., K. Benson, H. Ashar, and K. Chada. 1995. Pygmy gene encodes HMG I-C, member of an embryonically expressed architectural factor family. Nature 376:771-774.