Solution structure of a polypeptide from the N terminus of the HIV protein Nef

Biochemistry

Volumn 36, Issue 20, 1997, Pages 5970-5980

  Barnham, Kevin J ^a   Monks, Stephen A ^a   Hinds, Mark G ^a   Azad, Ahmed A ^a   Norton, Raymond S ^a  

^a CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MELITTIN; METHANOL; NEF PROTEIN; PHOSPHOPROTEIN; POLYPEPTIDE; TRIFLUOROETHANOL; VIRUS PROTEIN;

AMINO TERMINAL SEQUENCE; AQUEOUS SOLUTION; ARTICLE; CARBOXY TERMINAL SEQUENCE; CIS TRANS ISOMERISM; CONTROLLED STUDY; HUMAN IMMUNODEFICIENCY VIRUS; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; GENE PRODUCTS, NEF; HIV; MAGNETIC RESONANCE SPECTROSCOPY; METHANOL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, SECONDARY; SOLUTIONS; WATER;

HUMAN IMMUNODEFICIENCY VIRUS;

EID: 0030997633     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9629945     Document Type: Article

References (74)

1. Allan, J. S., Coligan, J. E., Lee, T.-H., McLane, M. F., Kanki, P., Groopman, J. E., & Essex, M. (1985) Science 230, 810-813.
2. Anil-Kumar, Ernst, R. R., & Wüthrich, K. (1980) Biochem. Biophys. Res. Commun. 95, 1-6.
3. Artenstein, A. W., Hiegerich, P. A., Beyrer, C., Rungruengthanakit, K., Michael, N. L., & Natpratan, C. (1996) AIDS Res. Hum. Retroviruses 12, 557-560.
4. Barlow, D. J., & Thornton, J. M. (1988) J. Mol. Biol. 201, 601-619.
5. Bartels, C., Xia, T.-H., Billeter, M., Güntert, P., & Wüthrich, K. (1995) J. Biomol. NMR 5, 1-10.
6. Bax, A., Griffey, R. H., & Hawkins, B. L. (1983) J. Magn. Reson. 55, 301-315.
7. Bazzo, R., Tappin, M. J., Pastore, A., Harvey, T. S., Carver, J. A., & Campbell, I. D. (1988) Eur. J. Biochem. 173, 139-146.
8. Bello, J., Bello, H. R., & Grandos, E. (1982) Biochemistry 21, 461-465.
9. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., & Tasumi, M. (1997) J. Mol. Biol. 112, 535-542.
10. Blondelle, S. E., & Houghten, S. E. (1991) Biochemistry 30, 4671-4678.
11. Blondelle, S. E., Simpkins, L. R., Perez-Paya, E., & Houghten, S. E. (1993) Biochim. Biophys. Acta 1202, 331-336.
12. Braunschweiler, L., & Ernst, R. R. (1983) J. Magn. Reson. 53, 521-528.
13. Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., & Karplus, M. (1983) J. Comput. Chem. 4, 187-217.
14. Brown, L. R., & Wüthrich, K. (1981) Biochim. Biophys. Acta 647, 95-111.
15. Brown, L. R., Braun, W., Anil-Kumar, & Wüthrich, K. (1982) Biophys. J. 37, 319-328.
16. Brünger, A. T. (1992) X-PLOR Version 3.1. A system for X-ray Crystallography and NMR, Yale University, New Haven, CT.
17. Cullen, B. R. (1994) Virology 205, 1-6.
18. Curtain, C. C., Separovic, F., Rivett, D., Kirkpatrick, A., Waring, A. J., Gordon, L. M., & Azad, A. A. (1994) AIDS Res. Hum. Retroviruses 10, 1231-1239.
19. Curtain, C. C., Lowe, M. G., Arunagiri, C. K., Mobley, P. W., Macreadie, I. G., & Azad, A. A. (1997) AIDS Res. Hum. Retroviruses (in press).
20. Dawson, C. R., Drake, A. F., Helliwell, J., & Hider, R. C. (1978) Biochim. Biophys. Acta 510, 75-86.
21. Deacon, N. J., Tsykin, A., Solomon, A., Smith, K., Ludford-Menting, M., Hooker, D. J., McPhee, D. A., Greenway, A. L., Ellet, A., Chatfield, C., Lawson, V. A., Crowe, S., Maerz, A., Sonza, S., Learmont, J., Sullivan, J. S., Cunningham, A., Dwyer, D., Dowton, D., & Mills, J. (1995) Science 270, 988-991.
22. Dyson, H. J., Rance, M., Houghten, R. A., Wright, P. E., & Lerner, R. A. (1988) J. Mol. Biol. 201, 201-217.
23. Dyson, H. J., Merutka, G., Waltho, J. P., Lerner, R. A., & Wright, P. E. (1992) J. Mol. Biol. 226, 795-817.
24. Freund, J., Kellner, R., Houthaeve, T., & Kalbitzer, H. R. (1994) Eur. J. Biochem. 221, 811-819.
25. Goldsmith, M. A., Warmerdam, M. T., Atchison R. E., Millar, M. D., & Greene, W. C. (1995) J. Virol. 69, 4112-4121.
26. Greenway, A. L., McPhee, D. A., Grgacic, E., Hewish, D., Lucantoni, A., Macreadie, I., & Azad, A. (1994) Virology 198, 245-256.
27. Greenway, A. L., Azad, A., & McPhee, D. A. (1995) J. Virol. 69, 1842-1850.
28. Griesinger, C., Sørenson, O., & Ernst, R. R. (1987) J. Magn. Reson. 75, 474-492.
29. Grzesiek, S., Bax, A., Clore, G. M., Gronenborn, A. M., Hu, J.-S., Kaufman, J., Palmer, I., Stahl, S. J., & Wingfield, P. T. (1996) Nat. Struct. Biol. 3, 340-345.
30. Güntert, P., Braun, W., & Wüthrich, K. (1991) J. Mol. Biol. 217, 517-530.
31. Guy, B., Kieny, M. P., Riviere, Y., LePeuch, C., Girard, M., Montagnier, L., & Lecocq, J. P. (1987) Nature 330, 266-269.
32. Hyberts, S. G., Goldberg, M. S., Havel, T. F., & Wagner, G. (1992) Protein Sci. 1, 736-751.
33. Ikura, T., Gõ, N., & Inagaki, F. (1991) Proteins: Struct., Funct., Genet. 9, 81-89.
34. Inagaki, F., Shimada, I., Kawaguchi, K., Hirano, M., Terasawa, T., & Gõ, N. (1989) Biochemistry 28, 5985-5991.
35. Kaplan, J. M., Mardon, G., Bishop, J. M., & Varmus, H. E. (1988) Mol. Cell. Biol. 8, 2435-2441.
36. Kestler, H. W., III, Ringler, D. J., Mori, K., Panicali, D. L., Sehgal, P. K., Daniel, M. D., & Desrosiers, R. C. (1991) Cell 65, 651-662.
37. Lee, C.-H., Saksela, K., Mirza, U. A., Chait, B. T., & Kuriyan, J. (1996) Cell 85, 931-942.
38. Lee, K. H., Fitton, J. E., & Wüthrich, K. (1987) Biochim. Biophys. Acta 911, 144-153.
39. Ludvigsen, S., & Poulsen, F. M. (1992) J. Biomol. NMR 2, 227-233 .
40. Macreadie, I. G., Castelli, L. A., Lucantoni, A., & Azad, A. A. (1995) Gene 162, 239-243.
41. Macreadie, I. G., Lowe, M. G., Curtain, C. C., Hewish, D., & Azad, A. A. (1997) Biochem. Biophys. Res. Commun. (in press).
42. Macura, S., Huang, Y., Suter, D., & Ernst, R. R. (1981) J. Magn. Reson. 43, 259-281.
43. Manoleras, N., & Norton, R. S. (1994) Biochemistry 33, 11051-11061.
44. Marion, D., & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974.
45. Maurer, T., Lücke, C., & Rüterjans, H. (1991) Eur. J. Biochem. 196, 135-141.
46. Monks, S. A., Pallaghy, P. K., Scanlon, M. J., & Norton, R. S. (1995) Structure 3, 791-803.
47. Morton, C. J., Simpson, R. J., & Norton, R. S. (1994) Eur. J. Biochem. 219, 97-107.
48. Nelson, J. W., & Kallenbach, N. R. (1986) Proteins 1, 211-217.
49. Pallaghy, P. K., Duggan, B. M., Pennington, M. W., & Norton, R. S. (1993) J. Mol. Biol. 234, 405-420.
50. Piotto, M., Saudek, V., & Sklenar, V. (1992) J. Biomol. NMR 2, 661-666.
51. Quay, S. C., & Condie, C. C. (1983) Biochemistry 22, 695-700.
52. Rance, M., Sørenson, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R., & Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 177, 479-485.
53. Rivett, D. E., Kirkpatrick, A., Hewish, D. R., Reilly, W., & Werkmeister, J. A. (1996) Biochem. J. (Part 2) 316, 525-529.
54. Rucker, S. P., & Shaka, A. J. (1989) Mol. Phys. 68, 509-517.
55. Sabatier, J.-M., Fontan, G., Loret, E., Mabrouk, K., Rochat, H., Gluckman, J.-C., Montagnier, L., Granier, C., Bahraoui, E., & van Rietschoten, J. (1990) Int. J. Pept. Protein Res. 35, 63-72.
56. Saksela, K., Cheng, G., & Baltimore, D. (1995) EMBO J. 14, 484-491.
57. Schwartz, O., Marechal, V., Danos, O., & Heard, J. M. (1995) J. Virol. 69, 4053-4059.
58. Shugars, D. C., Smith, M. S., Glueck, D. H., Nantermet, P. V., Seillerier-Moiseiwitsch, F., & Swanstrom, R. (1993) J. Virol. 67, 4639-4650.
59. Sönnichsen, F. D., Van Eyk, J. E., Hodges, R. S., & Sykes, B. D. (1992) Biochemistry 31, 8790-8798.
60. Tappin, M. J., Pastore, A., Norton, R. S., Freer, J. H., & Campbell, I. D. (1988) Biochemistry 27, 1643-1647.
61. Terwilliger, T. C., & Eisenberg, D. (1982) J. Biol. Chem. 257, 6016-6022.
62. Terwilliger, T. C., Weissman, L., & Eisenberg, D. (1982) Biophys. J. 37, 353-361.
63. Trono, D. (1995) Cell 82, 189-192.
64. van Geet, A. L. (1970) Anal. Chem. 42, 679-680.
65. Wagner, G., Braun, W., Havel, T. F., Schaumann, T., Gõ, N., & Wüthrich, K. (1987) J. Mol. Biol. 196, 611-639.
66. Werkmeister, J. A., Kirkpatrick, A., McKenzie, J. A., & Rivett, D. E. (1993) Biochim. Biophys. Acta 1157, 50-54.
67. Wilcox, G. R., Fogh, R. H., & Norton, R. S. (1993) J. Biol. Chem. 268, 24707-24719.
68. Wishart, D. S., Sykes, B. D., & Richards, F. M. (1991) J. Mol. Biol. 222, 311-333.
69. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, J., Oldfield, E., Markley, J. L., & Sykes, B. D. (1995a) J. Biomol. NMR 6, 135-140.
70. Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S., & Sykes, B. D. (1995b) J. Biomol. NMR 5, 67-81.
71. Wüthrich, K. (1976) NMR in Biological Research: Peptides and Proteins, North-Holland, Oxford.
72. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York.
73. Zazopoulos, E., & Haseltine, W. A. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 6634-6638.
74. Zhou, N. E., Zhu, B.-Y., Sykes, B. D., & Hodges, R. S. (1992) J. Am. Chem. Soc. 114, 4320-4326.