Homology modeling of adenylosuccinate synthetase from saccharomyces cerevisiae reveals a possible binding region for single-stranded ars sequences

Journal of Biomolecular Structure and Dynamics

Volumn 14, Issue 6, 1997, Pages 667-675

  Sticht, Heinrich ^a   Gallert, Karl Christian ^a   Krauss, Gerhard ^a   Rösch, Paul ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ADENYLOSUCCINATE SYNTHASE; DNA;

ARTICLE; CONTROLLED STUDY; ENZYME STRUCTURE; ESCHERICHIA COLI; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

EID: 0030977499     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1997.10508170     Document Type: Article

References (31)

1. Gallert, K.-C., Ohanjan, T., Daignan-Fornier, B., Lottspeich, F., and Krauss, G., 1996. Eur. J. Biochem., 239:487–493.
2. Gallert, K.-C., 1996. PhD Thesis Bayreuth University.
3. Sali, A., Curr. Opin. in Biotechnology, 6367–369. (1995)
4. Doelz, R., Hehn, C., Darimont, B., and Sterner, R., 1994. J. Mol. Graphics, 12:78
5. Sticht, H., Wildegger, G., Bentrop, D., Darimont, B., Sterner, R., and Rösch, P., 1996. Eur. J. Biochem., 237:726–735.
6. Wildegger, G., Bentrop, D., Ejchart, A., Alber, M., Hage, A., Sterner, R., and Rösch, P., 1995. Eur. J. Biochem., 229:658–668.
7. Macedo-Ribeiro, S., Darimont, B., Sterner, R., and Huber, R., 1996. Structure, 4:1291–1301.
8. Poland, B. W., Silva, M. M., Serra, M. A., Cho, Y., Kim, K. H., Harris, E. M.S., and Honzatko, R., 1993. J. Biol. Chem., 268:25334–25342.
9. Honzatko, R., personal communication
10. Bajorath, J., Stenkamp, R., and Aruffo, A., 1993. Prot. Sci., 2:1798–1810.
11. Zeidler, R., Hobert, O., Johannes, L., Faulhammer, H., and Krauss, G., 1993. J. Biol. Chem., 268:20191–20197.
12. Phillipsen, P., Stotz, A., and Scherf, C., 1992. Methods in Enzymol., 194:169–182.
13. Sanger, F., Nicklem, S., and Coulson, A. R., 1977. Proc. Natl. Acad. Sci. USA, 74:5463–5467.
14. Soans, C., and Fromm, H. J., 1991. Arch. Biochem. Biophys., 291:107–112.
15. Schiffer, C. A., Caldwell, J. W., Kollman, P. A., and Stroud, R. M., 1990. Proteins, 8:30–43.
16. Stewart, D. E., Weiner, P. K., and Wampler, J. E., 1987. J. Mol. Graph., 5:133–140.
17. Bassolino-Klimas, D., and Bruccoleri, R. E., 1992. Proteins, 14:465–474.
18. vanGelder, C. W.G., Leusen, F. J.J., Leunissen, J. A.M., and Noordik, J. H., 1994. Proteins, 18:174–185.
19. Collura, V., Higo, J., and Garnier, J., 1993. Prot. Sci., 2:1502–1510.
20. Higo, J., Collura, V., and Gamier, J., 1992. Biopolymers, 32:33–43.
21. Brünger, A. T., 1993. X-PLOR Version 3.1 New Haven, CT:Howard Hughes Medical Institute & Yale University.
22. Powell, M. J.D., 1977. Mathemat. Progr., 12:241–254.
23. Verlet, L., 1967. Phys. Rev., 159:98–103.
24. Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L., 1983. J. Chem. Phys., 79:926–935.
25. 1993. SYBYL, Molecular Modeling Software, Tripos Association, Inc., USA.
26. Nicholls, A., Sharp, K., and Honig, B., 1991. Proteins, 11:281
27. Ohanjan, T., and Gallert, K.-C., unpublished data
28. Shamoo, Y., Friedman, A. M., Parsons, M. R., Konigsberg, W. H., and Steitz, T. A., 1995. Nature, 376:362–366.
29. Hünenberger, P. H., Mark, A. E., and vanGunsteren, W. F., 1995. J. Mol. Biol., 252:492–503.
30. Harrison, S. C., 1991. Nature, 353:715–719.
31. Higgins, D. G., Bleasby, A. J., and Fuchs, R., 1992. Comput. Appi. Biosci., 8:189–191.