HLA-B typing by allele separation followed by direct sequencing

Tissue Antigens

Volumn 49, Issue 4, 1997, Pages 365-375

  Eberle, M ^a   Knapp, L A ^a   Iwanaga, K K ^a   Domanico, M J ^b   Aiyer, K ^b   Watkins, D I ^a,c  

^a UNIVERSITY OF WISCONSIN   (United States)

^b Pel Freez   (United States)

^c UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

cDNA; DGGE; HLA B; PCR; Sequencing; Typing

Indexed keywords

DNA FRAGMENT; HLA B ANTIGEN; RNA;

ABORIGINE; ALLELE; ARTICLE; CELL LINE; CONTROLLED STUDY; DATA BASE; DENATURING GRADIENT GEL ELECTROPHORESIS; EXON; GENE AMPLIFICATION; GENE LOCUS; GENE SEQUENCE; GENOTYPE; HUMAN; HUMAN CELL; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA TRANSCRIPTION; SEROTYPE; WORKSHOP;

EID: 0030973926     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.1997.tb02764.x     Document Type: Article

References (29)

1. Arnett KL, Parham P. HLA class I nucleotide sequences, 1995. Tissue Antigens 1995: 45: 217-257.
2. van Rood JJ, Van Leeuwen A, Keuning JJ, Blusse van Oud Alblas A. The serological recognition of the human MLC determinants using a modified cytotoxicity technique. Tissue Antigens 1975: 5: 73-79.
3. Yao Z, Keller E, Scholz S, McNicholas A, Volgger A, Albert ED. Identification of two major HLA-B44 subtypes and a novel B44 sequence (B*4404). Oligotyping and solid phase sequencing of polymerase chain reaction products. Hum Immunol 1995: 42: 54-60.
4. Cereb N, Maye P, Lee S, Kong Y, Yang SY. Locus-specific amplification of HLA class I genes from genomic DNA: locus-specific sequences in the first and third introns of HLA-A, -B, and -C alleles. Tissue Antigens 1995: 45: 1-11.
5. Middleton D, Williams F, Cullen C, Mallon E. Modification of an HLA-B PCR SSOP typing system leading to improved allele determination. Tissue Antigens 1995: 45: 232-236.
6. Fleischhauer K, Zino E, Bordignon C, Benazzi E. Complete generic and extensive fine-specificity typing of the HLA-B locus by the PCR-SSOP method. Tissue Antigens 1995: 46: 281-292.
7. Fernandez-Vina M, Lazaro AM, Sun Y, Miller S, Forero L, Stastny P. Population diversity of B-locus alleles observed by high-resolution DNA typing. Tissue Antigens 1995: 45: 153-168.
8. Inamdar A, Sintasath DM, Husted L et al. Typing the HLA-B locus by a nested primer approach and oligonucleotide hybridization. Tissue Antigens 1996: 47: 519-529.
9. Sadler AM, Petronzelli F, Krausa P et al. Low-resolution DNA typing for HLA-B using sequence-specific primers in allele- or group-specific ARMS/PCR. Tissue Antigens 1994: 44: 148-154.
10. Bunce M, Fanning GC, Welsh KI. Comprehensive, serologically equivalent DNA typing for HLA-B by PCR using sequence-specific primers (PCR-SSP). Tissue Antigens 1995: 45: 81-90.
11. Santamaria P, Lindstrom AL, Boyce-Jacino MT et al. HLA class I sequence-based typing. Hum Immunol 1993: 37: 39-50.
12. Petersdorf EW, Hansen JA. A comprehensive approach for typing the alleles of the HLA-B locus by automated sequencing. Tissue Antigens 1995: 46: 73-85.
13. Ellexson M, Stewart D, Chrétien P, Zhang L, Hildebrand W. Description of a modified sequencing strategy and the molecular characterization of HLA-B*8201. Tissue Antigens 1996: 47: 4438-441.
14. Prasad VK, Yang SY. Allele assignment for HLA-A, -B, and -C genes to the Tenth International Histocompatibility Workshop cell lines. Tissue Antigens 1996: 47: 538-546.
15. Watkins DI, McAdam SN, Lui X et al. New recombinant HLA-B alleles in a tribe of South American Amerindians indicate rapid evolution of MHC class I loci. Nature 1992: 357: 329-333.
16. Garber TL, Butler LM, Trachtenberg EA et al. HLA-B alleles of the Cayapa of Ecuador: new B39 and B15 alleles. Immunogenetics 1995: 42: 19-27.
17. Belich MP, Madrigal JA, Hildebrand WH et al. Unusual HLA-B alleles in two tribes of Brazilian Indians. Nature 1992: 357: 326-329.
18. McAdam SN, Boyson JE, Lui X et al. A uniquely high level of recombination at the HLA-B locus. Proc Natl Acad Sci U S A 1994: 91: 5893-5897.
19. Myers RM, Sheffield VC, Cox DR. Detection of single base changes in DNA: ribonuclease and denaturing gradient gel electrophoresis. In: Davies K, ed. Genomic analysis: a practical approach. Oxford: IRL Press, 1988: 95-139.
20. Lerman LS, Silverstein K. Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis. Methods Enzymol 1987: 155: 482-501.
21. Lessa EP. Rapid surveying of DNA sequence variation in natural populations. Mol Biol Evol 1992: 9: 323-330.
22. Sheffield VC, Cox DR, Lerman LS, Myers RM. Attachment of a 40-base-pair G+C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci U S A 1989: 86: 232-236.
23. McGinnis MD, Conrad MP, Bouwens AG, Tilanus MG, Kronick MN. Automated, solid-phase sequencing of DRB region genes using T7 sequencing chemistry and dye-labeled primers. Tissue Antigens 1995: 46: 173-9.
24. Versluis LF, Rozemuller E, Tonks S et al. High-resolution HLA-DPB typing based upon computerized analysis of data obtained by fluorescent sequencing of the amplified polymorphic exon 2. Hum Immunol 1993: 38: 277-283.
25. Grompe M. The rapid detection of unknown mutations in nucleic acids. Nature Genet 1993: 5: 111-117.
26. Garber TL, McAdam SN, Butler LM et al. HLA-B alleles of the Navajo: no evidence for rapid evolution in the Nadene. Tissue Antigens 1996: 47: 143-146.
27. Guldberg P, Guttler F. A simple method for identification of point mutations using denaturing gradient gel electrophoresis. Nucleic Acids Res 1993: 21: 2261-2262.
28. Hultman T, Stahl S, Homes E, Uhlen M. Direct solid phase sequencing of genomic and plasmid DNA using magnetic beads as solid support. Nucleic Acids Res 1989: 17: 4937-46.
29. Knapp LA, Cadavid LF, Eberle ME, Knechtle SJ, Bontrop RE, Watkins DI. Identification of novel Mamu-DRB alleles using DGGE and direct sequencing. Immunogenetics 1997: 45: 171-179.