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Volumn 3, Issue 3, 1997, Pages 303-314

Contribution of the C-terminal tail of U1A RBD1 to RNA recognition and protein stability

Author keywords

human U1A protein; RBD; RNA; RNA protein interaction

Indexed keywords

PROTEIN; RNA;

EID: 0030968459     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (36)

References (37)
  • 1
    • 0029978824 scopus 로고    scopus 로고
    • Solution structure of the N-terminal RNP domain of U1A protein: The role of C-terminal residues in structure stability and RNA binding
    • Avis JM, Allain FHT, Howe PWA, Varani G, Nagai K, Neuhaus D. 1996. Solution structure of the N-terminal RNP domain of U1A protein: The role of C-terminal residues in structure stability and RNA binding. J Mol Biol 257:398-411.
    • (1996) J Mol Biol , vol.257 , pp. 398-411
    • Avis, J.M.1    Allain, F.H.T.2    Howe, P.W.A.3    Varani, G.4    Nagai, K.5    Neuhaus, D.6
  • 2
    • 0024655246 scopus 로고
    • RNA-binding proteins as developmental regulators
    • Bandziulis RJ, Swanson MS, Dreyfuss G. 1989. RNA-binding proteins as developmental regulators. Gene & Dev 3:431-437.
    • (1989) Gene & Dev , vol.3 , pp. 431-437
    • Bandziulis, R.J.1    Swanson, M.S.2    Dreyfuss, G.3
  • 3
    • 0027753933 scopus 로고
    • Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors
    • Birney E, Kumar S, Krainer AR. 1993. Analysis of the RNA-recognition motif and RS and RGG domains: Conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res 21:5803-5816.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5803-5816
    • Birney, E.1    Kumar, S.2    Krainer, A.R.3
  • 5
    • 0024291318 scopus 로고
    • N-U values in a thermodynamic cycle
    • N-U values in a thermodynamic cycle. Biochemistry 27:8069-8074.
    • (1988) Biochemistry , vol.27 , pp. 8069-8074
    • Bolen, D.W.1    Santoro, M.2
  • 6
    • 0028129989 scopus 로고
    • Conserved structures and diversity of functions of RNA-binding proteins
    • Burd CG, Dreyfuss G. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621.
    • (1994) Science , vol.265 , pp. 615-621
    • Burd, C.G.1    Dreyfuss, G.2
  • 8
    • 0028176929 scopus 로고
    • Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP A1 protein using three-dimensional heteronuclear magnetic resonance spectroscopy
    • Garrett DS, Lodi PJ, Shamoo Y, Williams K, Clore GM, Gronenborn A. 1994. Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP A1 protein using three-dimensional heteronuclear magnetic resonance spectroscopy. Biochemistry 33:2852-2858.
    • (1994) Biochemistry , vol.33 , pp. 2852-2858
    • Garrett, D.S.1    Lodi, P.J.2    Shamoo, Y.3    Williams, K.4    Clore, G.M.5    Gronenborn, A.6
  • 9
    • 0027992089 scopus 로고
    • The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins
    • Görlach M, Burd CG, Dreyfuss G. 1994. The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem 269:23074-23078.
    • (1994) J Biol Chem , vol.269 , pp. 23074-23078
    • Görlach, M.1    Burd, C.G.2    Dreyfuss, G.3
  • 10
    • 0026757694 scopus 로고
    • Interaction of the RNA-binding domain of the hnRNP C proteins with RNA
    • Görlach M, Wittekind M, Beckman RA, Dreyfuss G. 1992. Interaction of the RNA-binding domain of the hnRNP C proteins with RNA. EMBO J 11:3289-3295.
    • (1992) EMBO J , vol.11 , pp. 3289-3295
    • Görlach, M.1    Wittekind, M.2    Beckman, R.A.3    Dreyfuss, G.4
  • 11
    • 0027956671 scopus 로고
    • Interactions of RNA hairpins with the human U1A N-terminal RNA binding domain
    • Hall KB. 1994. Interactions of RNA hairpins with the human U1A N-terminal RNA binding domain. Biochemistry 33:10076-10088.
    • (1994) Biochemistry , vol.33 , pp. 10076-10088
    • Hall, K.B.1
  • 12
    • 0029101018 scopus 로고
    • Thermodynamics and mutations in RNA-protein interactions
    • Hall KB, Kranz JK. 1995. Thermodynamics and mutations in RNA-protein interactions. Methods Enzymol 259:261-281.
    • (1995) Methods Enzymol , vol.259 , pp. 261-281
    • Hall, K.B.1    Kranz, J.K.2
  • 13
    • 0026713783 scopus 로고
    • Interactions of N-terminal domain of U1A protein with an RNA stem/loop
    • Hall KB, Stump WT. 1992. Interactions of N-terminal domain of U1A protein with an RNA stem/loop. Nucleic Acids Res 20:4283-4290.
    • (1992) Nucleic Acids Res , vol.20 , pp. 4283-4290
    • Hall, K.B.1    Stump, W.T.2
  • 14
    • 0025964204 scopus 로고
    • RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins
    • Hoffman DW, Query CC, Golden BL, White SW, Keene JD. 1991. RNA-binding domain of the A protein component of the U1 small nuclear ribonucleoprotein analyzed by NMR spectroscopy is structurally similar to ribosomal proteins. Proc Natl Acad Sci USA 88:2495-2499.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 2495-2499
    • Hoffman, D.W.1    Query, C.C.2    Golden, B.L.3    White, S.W.4    Keene, J.D.5
  • 15
    • 0025938601 scopus 로고
    • Identification of molecular contacts between the U1A small nuclear ribonucleoprotein and U1 RNA
    • Jessen TH, Oubridge C, Teo CH, Pritchard C, Nagai K. 1991. Identification of molecular contacts between the U1A small nuclear ribonucleoprotein and U1 RNA. EMBO J 10:3447-3456.
    • (1991) EMBO J , vol.10 , pp. 3447-3456
    • Jessen, T.H.1    Oubridge, C.2    Teo, C.H.3    Pritchard, C.4    Nagai, K.5
  • 16
    • 0029115921 scopus 로고
    • Interaction of the Sex-lethal RNA binding domains with RNA
    • Kanaar R, Lee AL, Rudner DZ, Wemmer DE, Rio DC. 1995. Interaction of the Sex-lethal RNA binding domains with RNA. EMBO J 14:4530-4539.
    • (1995) EMBO J , vol.14 , pp. 4530-4539
    • Kanaar, R.1    Lee, A.L.2    Rudner, D.Z.3    Wemmer, D.E.4    Rio, D.C.5
  • 18
    • 0025761656 scopus 로고
    • RNA recognition: Towards identifying determinants of specificity
    • Kenan DJ, Query CC, Keene JD. 1991. RNA recognition: Towards identifying determinants of specificity. Trends Biochem Sci 16:214-220.
    • (1991) Trends Biochem Sci , vol.16 , pp. 214-220
    • Kenan, D.J.1    Query, C.C.2    Keene, J.D.3
  • 19
    • 0030018338 scopus 로고    scopus 로고
    • Contributions of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain. 1996
    • Kranz JK, Lu J, Hall KB. 1996. Contributions of the tyrosines to the structure and function of the human U1A N-terminal RNA binding domain. 1996. Protein Sci 5:1567-1583.
    • (1996) Protein Sci , vol.5 , pp. 1567-1583
    • Kranz, J.K.1    Lu, J.2    Hall, K.B.3
  • 20
    • 0029615981 scopus 로고
    • Analysis of RNA-binding proteins by in vitro genetic selection: Identification of an amino acid residue important for locking U1A onto its RNA target
    • Laird-Offringa IA, Belasco JG. 1995. Analysis of RNA-binding proteins by in vitro genetic selection: Identification of an amino acid residue important for locking U1A onto its RNA target. Proc Natl Acad Sci USA 92:11859-11863.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11859-11863
    • Laird-Offringa, I.A.1    Belasco, J.G.2
  • 21
    • 0028027496 scopus 로고
    • Resonance assignments and solution structure of the second RNA-binding domain of Sex-lethal determined by multidimensional heteronuclear magnetic resonance
    • Lee AL, Kanaar R, Rio DC, Wemmer DE. 1994. Resonance assignments and solution structure of the second RNA-binding domain of Sex-lethal determined by multidimensional heteronuclear magnetic resonance. Biochemistry 33:13775-13786.
    • (1994) Biochemistry , vol.33 , pp. 13775-13786
    • Lee, A.L.1    Kanaar, R.2    Rio, D.C.3    Wemmer, D.E.4
  • 22
    • 0028965970 scopus 로고
    • An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA-binding domain from the human U1A protein
    • Lu J, Hall KB. 1995. An RBD that does not bind RNA: NMR secondary structure determination and biochemical properties of the C-terminal RNA-binding domain from the human U1A protein. J Mol Biol 247:739-752.
    • (1995) J Mol Biol , vol.247 , pp. 739-752
    • Lu, J.1    Hall, K.B.2
  • 23
    • 0030930931 scopus 로고    scopus 로고
    • Thermal unfolding of the N-terminal RNA binding domain of human U1A protein studied by differential scanning calorimetry
    • Forthcoming
    • Lu J, Hall KB. 1997. Thermal unfolding of the N-terminal RNA binding domain of human U1A protein studied by differential scanning calorimetry. Biophys Chem. Forthcoming.
    • (1997) Biophys Chem.
    • Lu, J.1    Hall, K.B.2
  • 24
    • 0025127420 scopus 로고
    • Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA
    • Lutz-Freyermuth C, Query CC, Keene JD. 1990. Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA. Proc Natl Acad Sci USA 87:6393-6397.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 6393-6397
    • Lutz-Freyermuth, C.1    Query, C.C.2    Keene, J.D.3
  • 25
    • 0024565671 scopus 로고
    • A binding consensus: RNA-protein interactions in splicing, snRNPs, and sex
    • Mattaj IW. 1989. A binding consensus: RNA-protein interactions in splicing, snRNPs, and sex. Cell 57:1-3.
    • (1989) Cell , vol.57 , pp. 1-3
    • Mattaj, I.W.1
  • 26
    • 0025221731 scopus 로고
    • Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A
    • Nagai K, Oubridge C, Jessen TH, Li J, Evans PR. 1990. Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A. Nature 348:515-520.
    • (1990) Nature , vol.348 , pp. 515-520
    • Nagai, K.1    Oubridge, C.2    Jessen, T.H.3    Li, J.4    Evans, P.R.5
  • 27
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
    • Oubridge C, Ito N, Evans PR, Teo CH, Nagai K. 1994. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature 372:432-438.
    • (1994) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.R.3    Teo, C.H.4    Nagai, K.5
  • 28
    • 0022555885 scopus 로고
    • Determination and analysis of urea and guanidine hydrochloride denaturation curves
    • Pace CN. 1986. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Methods Enzymol 131:266-280.
    • (1986) Methods Enzymol , vol.131 , pp. 266-280
    • Pace, C.N.1
  • 29
    • 0023697408 scopus 로고
    • Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl methanesulfonyl α-chymotrypsin using different denaturants
    • Santoro M, Bolen DW. 1988. Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenyl methanesulfonyl α-chymotrypsin using different denaturants. Biochemistry 27:8063-8068.
    • (1988) Biochemistry , vol.27 , pp. 8063-8068
    • Santoro, M.1    Bolen, D.W.2
  • 30
    • 0017802519 scopus 로고
    • Solvent denaturation
    • Schellman JA. 1978. Solvent denaturation. Biopolymers 17:1305-1322.
    • (1978) Biopolymers , vol.17 , pp. 1305-1322
    • Schellman, J.A.1
  • 31
    • 0024851833 scopus 로고
    • Identification of the RNA binding segment of human U1A protein and definition of its binding site on U1 snRNA
    • Scherly D, Boelens W, van Venrooij WJ, Dathan NA, Hamm J, Mattaj IW. 1989. Identification of the RNA binding segment of human U1A protein and definition of its binding site on U1 snRNA. EMBO J 8:4163-4170.
    • (1989) EMBO J , vol.8 , pp. 4163-4170
    • Scherly, D.1    Boelens, W.2    Van Venrooij, W.J.3    Dathan, N.A.4    Hamm, J.5    Mattaj, I.W.6
  • 32
    • 0025876048 scopus 로고
    • Conserved amino acid residues within and outside of the N-terminal ribonucleoprotein motif of U1A small nuclear ribonucleoprotein involved in U1 RNA binding
    • Scherly D, Kambach C, Boelens W, van Venrooij WJ, Mattaj IW. 1991. Conserved amino acid residues within and outside of the N-terminal ribonucleoprotein motif of U1A small nuclear ribonucleoprotein involved in U1 RNA binding. J Mol Biol 219:577-584.
    • (1991) J Mol Biol , vol.219 , pp. 577-584
    • Scherly, D.1    Kambach, C.2    Boelens, W.3    Van Venrooij, W.J.4    Mattaj, I.W.5
  • 33
    • 0023478466 scopus 로고
    • cDNA cloning of the human U1 snRNA-associated A protein: Extensive homology between U1 and U2 snRNP-associated proteins
    • Sillikens PTG, Habets WJ, Beijer RP, van Venrooij WJ. 1987. cDNA cloning of the human U1 snRNA-associated A protein: Extensive homology between U1 and U2 snRNP-associated proteins. EMBO J 6:3841-3848.
    • (1987) EMBO J , vol.6 , pp. 3841-3848
    • Sillikens, P.T.G.1    Habets, W.J.2    Beijer, R.P.3    Van Venrooij, W.J.4
  • 34
    • 0027379754 scopus 로고
    • SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates
    • Stump WT, Hall KB. 1993. SP6 RNA polymerase efficiently synthesizes RNA from short double-stranded DNA templates. Nucleic Acids Res 21:5480-5484.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5480-5484
    • Stump, W.T.1    Hall, K.B.2
  • 35
    • 12444276102 scopus 로고
    • Crosslinking of an iodo-uridine-RNA hairpin to a single site of the human U1A N-terminal RNA binding domain
    • Stump WT, Hall KB. 1995. Crosslinking of an iodo-uridine-RNA hairpin to a single site of the human U1A N-terminal RNA binding domain. RNA 1:55-63.
    • (1995) RNA , vol.1 , pp. 55-63
    • Stump, W.T.1    Hall, K.B.2
  • 36
    • 0029911683 scopus 로고    scopus 로고
    • RNA hairpins with non-nucleotide spacers bind efficiently to the human U1A protein
    • Williams DJ, Hall KB. 1996. RNA hairpins with non-nucleotide spacers bind efficiently to the human U1A protein. J Mol Biol 257:265-275.
    • (1996) J Mol Biol , vol.257 , pp. 265-275
    • Williams, D.J.1    Hall, K.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.