-
1
-
-
0001952393
-
Picornaviridae and their replication
-
Field, B.N., Kripe, D.M., Chanock, R.M., et al. (eds.). New York: Raven Press
-
Rueckert, R.R. Picornaviridae and their replication. In "Virology." Field, B.N., Kripe, D.M., Chanock, R.M., et al. (eds.). New York: Raven Press, 1982:507-548.
-
(1982)
Virology
, pp. 507-548
-
-
Rueckert, R.R.1
-
2
-
-
0018697357
-
Inhibition of uncoating of poliovirus by arildone, a new antiviral drug
-
McSharry, J.J., Caliguiri, L.A., Eggers, H.J. Inhibition of uncoating of poliovirus by arildone, a new antiviral drug. Virology 97:307-315, 1979.
-
(1979)
Virology
, vol.97
, pp. 307-315
-
-
McSharry, J.J.1
Caliguiri, L.A.2
Eggers, H.J.3
-
3
-
-
0022409872
-
Three-dimensional structure of poliovirus at 2.9 Å resolution
-
Hogle, J.M., Chow, M., Filman, D.J. Three-dimensional structure of poliovirus at 2.9 Å resolution. Science 229:1358-1365, 1985.
-
(1985)
Science
, vol.229
, pp. 1358-1365
-
-
Hogle, J.M.1
Chow, M.2
Filman, D.J.3
-
4
-
-
0024316730
-
Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus
-
Filman, D.J., Syed, R., Chow, M., Macadam, A.J., Minor, P.D., Hogle, J.M. Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus. EMBO J. 8:1567-1579, 1989.
-
(1989)
EMBO J.
, vol.8
, pp. 1567-1579
-
-
Filman, D.J.1
Syed, R.2
Chow, M.3
Macadam, A.J.4
Minor, P.D.5
Hogle, J.M.6
-
5
-
-
0028506672
-
Structure of poliovirus complexes with anti-viral drugs: Implications for viral stability and drug design
-
Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M. Structure of poliovirus complexes with anti-viral drugs: Implications for viral stability and drug design. Curr. Biol. 4:784-797, 1994.
-
(1994)
Curr. Biol.
, vol.4
, pp. 784-797
-
-
Grant, R.A.1
Hiremath, C.N.2
Filman, D.J.3
Syed, R.4
Andries, K.5
Hogle, J.M.6
-
6
-
-
0022401514
-
Structure of a human common cold virus and functional relationships to other picornaviruses
-
Rossmann, M.G., Arnold, E., Erickson, J.W., Frankenberger, E.A., Griffith, J.P., Hecht, H.-J., Johnson, Kamer, G., Luo, M., Mosser, A.G., Rueckert, R.R., Sherry, B., Vriend, G. Structure of a human common cold virus and functional relationships to other picornaviruses. Nature 317:145-153, 1985.
-
(1985)
Nature
, vol.317
, pp. 145-153
-
-
Rossmann, M.G.1
Arnold, E.2
Erickson, J.W.3
Frankenberger, E.A.4
Griffith, J.P.5
Hecht, H.-J.6
Johnson, K.G.7
Luo, M.8
Mosser, A.G.9
Rueckert, R.R.10
Sherry, B.11
Vriend, G.12
-
7
-
-
0027459472
-
A comparison of the anti-viral drug binding pocket in HRV14 and HRV1A
-
Kim, K.H., Willingmann, P., Gong, Z.X., Kremer, M.J., Chapman, M.S., Minor, I., Oliveira, M.A., Rossmann, M.G., Andries, K., Diana, G.D., Dutko, F.J., McKinlay, M.A., Pevear, D.C. A comparison of the anti-viral drug binding pocket in HRV14 and HRV1A. J. Mol. Biol. 230:206-227, 1993.
-
(1993)
J. Mol. Biol.
, vol.230
, pp. 206-227
-
-
Kim, K.H.1
Willingmann, P.2
Gong, Z.X.3
Kremer, M.J.4
Chapman, M.S.5
Minor, I.6
Oliveira, M.A.7
Rossmann, M.G.8
Andries, K.9
Diana, G.D.10
Dutko, F.J.11
McKinlay, M.A.12
Pevear, D.C.13
-
8
-
-
0001158480
-
Structural analysis of a series of antiviral agents complexed with human rhinovirus 14
-
Badger, J., Minor, I., Kremer, M.J., Oliveira, M.A., Smith, T.J., Griffith, J.P., Guerin, D.M.A., Krishnaswamy, S., Luo, M., Rossmann, M.G., McKinlay, M.A., Diana, G.D., Dutko, F.J., Fancher, M., Rueckert, R.R., Heinz, B.A. Structural analysis of a series of antiviral agents complexed with human rhinovirus 14. Proc. Natl. Acad. Sci. U.S.A. 85:3304-3308, 1988.
-
(1988)
Proc. Natl. Acad. Sci. U.S.A.
, vol.85
, pp. 3304-3308
-
-
Badger, J.1
Minor, I.2
Kremer, M.J.3
Oliveira, M.A.4
Smith, T.J.5
Griffith, J.P.6
Guerin, D.M.A.7
Krishnaswamy, S.8
Luo, M.9
Rossmann, M.G.10
McKinlay, M.A.11
Diana, G.D.12
Dutko, F.J.13
Fancher, M.14
Rueckert, R.R.15
Heinz, B.A.16
-
9
-
-
0024454604
-
Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
-
Badger, J., Minor, I., Oliveira, M.A., Smith, T.J., Rossmann, M.G. Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses. Proteins 6:1-19, 1989.
-
(1989)
Proteins
, vol.6
, pp. 1-19
-
-
Badger, J.1
Minor, I.2
Oliveira, M.A.3
Smith, T.J.4
Rossmann, M.G.5
-
10
-
-
0025217342
-
Two groups of rhinoviruses revealed by a panel of antiviral compounds present sequence divergence and differential pathogenicity
-
Andries, K., Dewindt, B., Snoeks, J., Wouters, L., Moereels, H., Lewi, P.J., Janssen, P.A. Two groups of rhinoviruses revealed by a panel of antiviral compounds present sequence divergence and differential pathogenicity. J. Virol. 64:1117-1123, 1990.
-
(1990)
J. Virol.
, vol.64
, pp. 1117-1123
-
-
Andries, K.1
Dewindt, B.2
Snoeks, J.3
Wouters, L.4
Moereels, H.5
Lewi, P.J.6
Janssen, P.A.7
-
11
-
-
34249753351
-
Computational combinatorial chemistry for de novo ligand design: Review and assessment
-
Caflisch, A., Karplus, M. Computational combinatorial chemistry for de novo ligand design: Review and assessment. Perspect. Drug Discovery Design 3:51-84, 1995.
-
(1995)
Perspect. Drug Discovery Design
, vol.3
, pp. 51-84
-
-
Caflisch, A.1
Karplus, M.2
-
12
-
-
0025916872
-
Functionality maps of binding sites: A multiple copy simultaneous search method
-
Miranker, A., Karplus, M. Functionality maps of binding sites: A multiple copy simultaneous search method. Proteins 11:29-34, 1991.
-
(1991)
Proteins
, vol.11
, pp. 29-34
-
-
Miranker, A.1
Karplus, M.2
-
13
-
-
0027219536
-
Multiple copy simultaneous search and construction of ligands in binding sites
-
Caflisch, A., Miranker, A., Karplus, M. Multiple copy simultaneous search and construction of ligands in binding sites. J. Med. Chem. 36:2142-2167, 1993.
-
(1993)
J. Med. Chem.
, vol.36
, pp. 2142-2167
-
-
Caflisch, A.1
Miranker, A.2
Karplus, M.3
-
14
-
-
0028773887
-
Structure-based drug design: Progress, results and challenges
-
Verlinde, C.L.M.J., Hol, W.G.J. Structure-based drug design: Progress, results and challenges. Structure 2:577-587, 1994.
-
(1994)
Structure
, vol.2
, pp. 577-587
-
-
Verlinde, C.L.M.J.1
Hol, W.G.J.2
-
15
-
-
0028152426
-
Role and mechanism of the maturation cleavage of VP0 in poliovirus assembly: Structure of the empty capsid assembly intermediate at 2.9 Å resolution
-
Basavappa, R., Syed, R., Flore, O., Icenogle, J.P., Filman, D.J., Hogle, J.M. Role and mechanism of the maturation cleavage of VP0 in poliovirus assembly: Structure of the empty capsid assembly intermediate at 2.9 Å resolution. Protein Sci. 3:1651-1669, 1994.
-
(1994)
Protein Sci.
, vol.3
, pp. 1651-1669
-
-
Basavappa, R.1
Syed, R.2
Flore, O.3
Icenogle, J.P.4
Filman, D.J.5
Hogle, J.M.6
-
16
-
-
0027463371
-
Structure of a human rhinovirus complexed with its receptor molecule
-
Olson, N.H., Kalatkar, P.R., Oliveira, M.A., Cheng, R.H., Goeva, J.M., McClelland, A., Baker, T.S., Rossmann, M.G. Structure of a human rhinovirus complexed with its receptor molecule. Proc. Natl. Acad. Sci. U.S.A. 90:507-511, 1993.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 507-511
-
-
Olson, N.H.1
Kalatkar, P.R.2
Oliveira, M.A.3
Cheng, R.H.4
Goeva, J.M.5
McClelland, A.6
Baker, T.S.7
Rossmann, M.G.8
-
17
-
-
0000490047
-
The viral canyon: The structure of rhinovirus-Fab and rhinovirus-cell receptor complexes have been determined by a combination of EM image reconstruction and X-ray crystallographic data
-
Hogle, J.M. The viral canyon: The structure of rhinovirus-Fab and rhinovirus-cell receptor complexes have been determined by a combination of EM image reconstruction and X-ray crystallographic data. Curr. Biol. 3:278-281, 1993.
-
(1993)
Curr. Biol.
, vol.3
, pp. 278-281
-
-
Hogle, J.M.1
-
18
-
-
0022489613
-
The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating
-
Smith, T.J., Kremer, M.J., Luo, M., Vriend, G., Arnold, E., Kamer, G., Rossmann, M.G., McKinlay, M.A., Diana, G.D., Otto, M.J. The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating. Science 233: 1286-1293, 1986.
-
(1986)
Science
, vol.233
, pp. 1286-1293
-
-
Smith, T.J.1
Kremer, M.J.2
Luo, M.3
Vriend, G.4
Arnold, E.5
Kamer, G.6
Rossmann, M.G.7
McKinlay, M.A.8
Diana, G.D.9
Otto, M.J.10
-
19
-
-
0025273268
-
Cell-induced conformational change in poliovirus: Externalization of the amino terminus of VP1 is responsible for liposome binding. J
-
Fricks, C.E., Hogle, J.M. Cell-induced conformational change in poliovirus: Externalization of the amino terminus of VP1 is responsible for liposome binding. J. Virol. 64:1934-1945, 1990.
-
(1990)
Virol.
, vol.64
, pp. 1934-1945
-
-
Fricks, C.E.1
Hogle, J.M.2
-
20
-
-
78650660501
-
The modification of poliovirus antigens by heat and ultraviolet light
-
LeBouvier, G.L. The modification of poliovirus antigens by heat and ultraviolet light. Lancet 269:1013-1016, 1955.
-
(1955)
Lancet
, vol.269
, pp. 1013-1016
-
-
LeBouvier, G.L.1
-
21
-
-
1842360009
-
The D to C changes in poliovirus particles
-
LeBouvier, G.L. The D to C changes in poliovirus particles. Br. J. Exp. Pathol. 40:605-620, 1959.
-
(1959)
Br. J. Exp. Pathol.
, vol.40
, pp. 605-620
-
-
LeBouvier, G.L.1
-
22
-
-
0010758164
-
Immunochemical studies of poliovirus particles produced in tissue culture
-
Roizman, B., Mayer, M.M., Rapp, H.J. Immunochemical studies of poliovirus particles produced in tissue culture. J. Immunol. 81:419-425, 1958.
-
(1958)
J. Immunol.
, vol.81
, pp. 419-425
-
-
Roizman, B.1
Mayer, M.M.2
Rapp, H.J.3
-
23
-
-
0001686680
-
Three-dimensional structure-activity relationships for antiviral agents that interact with picornavirus capsids
-
Zhang, A., Nanni, R.G., Oren, D.A., Rozhon, E.J., Arnold, E. Three-dimensional structure-activity relationships for antiviral agents that interact with picornavirus capsids. Virology 3:453-471, 1992.
-
(1992)
Virology
, vol.3
, pp. 453-471
-
-
Zhang, A.1
Nanni, R.G.2
Oren, D.A.3
Rozhon, E.J.4
Arnold, E.5
-
24
-
-
0025821080
-
A comparison of WIN51711 and R78206 as stabilizers of poliovirus virions and procapsids
-
Rombaut, B., Andries, K., Boeyé, A. A comparison of WIN51711 and R78206 as stabilizers of poliovirus virions and procapsids. J. Gen. Virol. 72:2153-2157, 1991.
-
(1991)
J. Gen. Virol.
, vol.72
, pp. 2153-2157
-
-
Rombaut, B.1
Andries, K.2
Boeyé, A.3
-
25
-
-
0028930769
-
Picornavirus inhibitors: Trifluoromethyl substitution provides a global protective effect against hepatic metabolism
-
Diana, G.D., Rudewicz, P., Pevear, D.C., Nitz, T.J., Aldous, S.C., Aldous, D.J., Robinson, D.T., Draper, T., Dutko, F.J., Aldi, C., Gendron, G., Oglesby, R.C., Volkots, D.L., Reuman, M., Bailey, T.R., Czerniak, R., Block, T., Roland, R., Oppermann, J. Picornavirus inhibitors: Trifluoromethyl substitution provides a global protective effect against hepatic metabolism. J. Med. Chem. 38:1355-1371, 1995.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 1355-1371
-
-
Diana, G.D.1
Rudewicz, P.2
Pevear, D.C.3
Nitz, T.J.4
Aldous, S.C.5
Aldous, D.J.6
Robinson, D.T.7
Draper, T.8
Dutko, F.J.9
Aldi, C.10
Gendron, G.11
Oglesby, R.C.12
Volkots, D.L.13
Reuman, M.14
Bailey, T.R.15
Czerniak, R.16
Block, T.17
Roland, R.18
Oppermann, J.19
-
26
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., Karplus, M. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4:187-217, 1983.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
27
-
-
0025600834
-
Enhanced sampling in molecular dynamics: Use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin
-
Elber, R., Karplus, M. Enhanced sampling in molecular dynamics: Use of the time-dependent Hartree approximation for a simulation of carbon monoxide diffusion through myoglobin. J. Am. Chem. Soc. 112:9161-9175, 1990.
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 9161-9175
-
-
Elber, R.1
Karplus, M.2
-
28
-
-
0004152038
-
-
Harvard University
-
Evensen, E., Joseph-McCarthy, D., Karplus, M., MCSSv2.1, 1997, Harvard University.
-
(1997)
MCSSv2.1
-
-
Evensen, E.1
Joseph-McCarthy, D.2
Karplus, M.3
-
29
-
-
0000763912
-
Molecular basis for the Born model of ion solvation
-
Roux, B., Yu, H., Karplus, M. Molecular basis for the Born model of ion solvation. J. Phys. Chem. 94:4683-4688, 1990.
-
(1990)
J. Phys. Chem.
, vol.94
, pp. 4683-4688
-
-
Roux, B.1
Yu, H.2
Karplus, M.3
-
30
-
-
0000036869
-
Simulation of activation free energies in molecular systems
-
Neria, E., Fischer, S., Karplus, M. Simulation of activation free energies in molecular systems. J. Chem. Phys. 105: 1902-1921, 1996.
-
(1996)
J. Chem. Phys.
, vol.105
, pp. 1902-1921
-
-
Neria, E.1
Fischer, S.2
Karplus, M.3
-
32
-
-
1842317514
-
-
In preparation
-
MacKerell, A.D., et al. In preparation, 1997.
-
(1997)
-
-
MacKerell, A.D.1
-
33
-
-
0007513520
-
Stabilization of poliovirus by cations
-
Wallis, C., Melnick, J.L. Stabilization of poliovirus by cations. Tex. Rep. Biol. Med. 19:683-700, 1961.
-
(1961)
Tex. Rep. Biol. Med.
, vol.19
, pp. 683-700
-
-
Wallis, C.1
Melnick, J.L.2
-
34
-
-
0024554659
-
Stabilization of poliovirus against heat inactivation
-
Dorval, B.L., Chow, M., Klibanov, A.M. Stabilization of poliovirus against heat inactivation. Biochem. Biophys. Res. Commun. 159:1177-1183, 1989.
-
(1989)
Biochem. Biophys. Res. Commun.
, vol.159
, pp. 1177-1183
-
-
Dorval, B.L.1
Chow, M.2
Klibanov, A.M.3
-
35
-
-
0023140814
-
Crystallographic R-factor refinement by molecular dynamics
-
Brünger, A.T., Kuriyan, J., Karplus, M. Crystallographic R-factor refinement by molecular dynamics. Science 235: 458-460, 1987.
-
(1987)
Science
, vol.235
, pp. 458-460
-
-
Brünger, A.T.1
Kuriyan, J.2
Karplus, M.3
-
36
-
-
0003576242
-
Rational approaches towards protease inhibition: Predicting the binding of thrombin inhibitors
-
Wipff, G. (ed.). Dordrecht: Kluwer Academic Press
-
Grootenhuis, P.D.J., Van Helden, S.P. Rational approaches towards protease inhibition: Predicting the binding of thrombin inhibitors. In "Computational Approaches in Supramolecular Chemistry." Wipff, G. (ed.). Dordrecht: Kluwer Academic Press, 1994:137-149.
-
(1994)
Computational Approaches in Supramolecular Chemistry
, pp. 137-149
-
-
Grootenhuis, P.D.J.1
Van Helden, S.P.2
-
37
-
-
0001452822
-
Correlation of binding affinities with nonbonded interaction energies of thrombin-inhibitor complexes
-
Grootenhuis, P.D.J., van Galen, P.J.M. Correlation of binding affinities with nonbonded interaction energies of thrombin-inhibitor complexes. Acta Crystallogr. D51:560-566, 1995,
-
(1995)
Acta Crystallogr.
, vol.D51
, pp. 560-566
-
-
Grootenhuis, P.D.J.1
Van Galen, P.J.M.2
-
38
-
-
0028519286
-
Prediction of new serine proteinase inhibitors
-
Kurinov, I.V., Harrison, R.W. Prediction of new serine proteinase inhibitors. Nature Struct. Biol. 1:735-743, 1994.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 735-743
-
-
Kurinov, I.V.1
Harrison, R.W.2
-
39
-
-
0029063951
-
A priori prediction of activity for HIV-1 protease inhibitors employing energy minimization in the active site
-
Holloway, M.K., et al. A priori prediction of activity for HIV-1 protease inhibitors employing energy minimization in the active site. J. Med. Chem. 38:305-317, 1995.
-
(1995)
J. Med. Chem.
, vol.38
, pp. 305-317
-
-
Holloway, M.K.1
-
40
-
-
0037571112
-
Merck Molecular Force Field. I. Basis, form, scope, parameterization, and performance of MMFF94
-
Halgren, T.A. Merck Molecular Force Field. I. Basis, form, scope, parameterization, and performance of MMFF94. J. Comput. Chem. 17:490-519, 1996.
-
(1996)
J. Comput. Chem.
, vol.17
, pp. 490-519
-
-
Halgren, T.A.1
-
41
-
-
0015350931
-
Bisbenzimidazoles: Potent inhibitors of rhinoviruses
-
Roderick, W.R., Nordeen, C.W., Jr., Von Esch, A.M., Appell, R.N. Bisbenzimidazoles: Potent inhibitors of rhinoviruses. J. Med. Chem. 15:655-658, 1972.
-
(1972)
J. Med. Chem.
, vol.15
, pp. 655-658
-
-
Roderick, W.R.1
Nordeen Jr., C.W.2
Von Esch, A.M.3
Appell, R.N.4
-
42
-
-
0028282687
-
A program for finding novel molecular architectures that satisfy the chemical and steric requirements of a macromolecule binding sites
-
Eisen, M.B., Wiley, D.C., Karplus, M., Hubbard, R.E. Hook: A program for finding novel molecular architectures that satisfy the chemical and steric requirements of a macromolecule binding sites. Proteins 19:199-221, 1994.
-
(1994)
Proteins
, vol.19
, pp. 199-221
-
-
Eisen, M.B.1
Wiley, D.C.2
Karplus, M.3
Hook, H.R.E.4
-
43
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic acids
-
Connolly, M.L. Solvent-accessible surfaces of proteins and nucleic acids. Science 221:709-713, 1983.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
|