Study of redox-regulated transcription factors in prokaryotes

Methods: A Companion to Methods in Enzymology

Volumn 11, Issue 3, 1997, Pages 267-278

  Demple, Bruce ^a  

^a HARVARD SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN PEROXIDE; NITRIC OXIDE; REGULATOR PROTEIN; SUPEROXIDE; TRANSCRIPTION FACTOR;

ANAEROBIC GROWTH; ANTIBIOTIC RESISTANCE; ARTICLE; GENE EXPRESSION REGULATION; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DNA BINDING; REGULON;

PROKARYOTA;

EID: 0030957824     PISSN: 10462023     EISSN: None     Source Type: Journal    
DOI: 10.1006/meth.1996.0421     Document Type: Article

References (57)

1. Lynch, A. S., and Lin, E. C. C. (1996) in Escherichi coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., Ed.), p. 1526-1538, ASM Press, Washington, DC.
2. Hidalgo, E., and Demple, B. (1996) in Regulation of Gene Expression in Escherichia coli (Lin, E. C. C., and Lynch, A. S., Eds.), pp. 433-450, Landes, Austin, TX.
3. Lazazzera, B. A., Beinert, H., Khoroshilova, N., Kennedy, M. C., and Kiley, P. J. (1996) J. Biol. Chem. 271, 2762-2768.
4. Toledano, M. B., Kullik, I., Trinh, F., Baird, P. T., Schneider, T. D., and Storz, G. (1994) Cell 78, 897-909.
5. Kullik, I., Stevens, J., Toledano, M. B., and Storz, G. (1995) J. Bacteriol. 177, 1285-1291.
6. Loewen, P. C., and Hengge-Aronis, R. (1994) Annu. Rev. Microbiol. 48, 53-80.
7. Becker-Hapak, M., and Eisenstark, A. (1995) FEMS Microbiol. Lett. 134, 39-44.
8. Ivanova, A., Miller, C., Glinsky, G., and Eisenstark, A. (1994) Mol. Microbiol. 12, 571-578.
9. Altuvia, S., Almiron, M., Huisman, G., Kolter, R., and Storz, G. (1994) Mol. Microbiol. 13, 265-272.
10. Hidalgo, E., and Demple, B. (1994) EMBO J. 13, 138-146.
11. Hidalgo, E., and Demple, B. (1996) J. Biol. Chem. 271, 7269-7272.
12. Ariza, R. R., Cohen, S. P., Bachhawat, N., Levy, S. B., and Demple, B. (1994) J. Bacteriol. 176, 143-814.
13. Touati, D., Jacques, M., Tardat, B., Bouchard, L., and Despied, S. (1995) J. Bacteriol. 177, 2305-2314.
14. VanBogelen, R. A., Abshire, K. Z., Pertsemlidis, A., Clark, R. L., and Neidhardt, F. C. (1996) in Escherichi coli and Salmonella: Cellular and Molecular Biology, (Neidhardt, F. C., Ed.), pp. 2067-2117, ASM Press, Washington, DC.
15. Christman, M. F., Morgan, R. W., Jacobson, F. S., and Ames, B. N. (1985) Cell 41, 753-762.
16. Morgan, R. W., Christman, M. F., Jacobson, F. S., Storz, G., and Ames, B. N. (1986) Proc. Natl. Acad. Sci. USA 83, 8059-8063.
17. Greenberg, J. T., and Demple, B. (1989) J. Bacteriol. 171, 3933-3939.
18. Greenberg, J. T., Monach, P., Chou, J. H., Josephy, P. D., and Demple, B. (1990) Proc. Natl. Acad. Sci. USA 87, 6181-6185.
19. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1995) in Current Protocols in Molecular Biology, Chapter 10, Wiley, New York.
20. O'Farrell, P. H., and O'Farrell, P. Z. (1977) Methods Cell. Biol. 16, 407-420.
21. Phillips, T. A. (1988) DNA Prot. Eng. Techniques 1, 5-9.
22. Laemmli, U. K. (1970) Nature 227, 680-685.
23. Silhavy, T., Berman, M. L., and Enquist, L. W. (1984) Experiments with Gene Fusions, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
24. Miller, J. H. (1992) A Short Course in Bacterial Genetics, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
25. Simons, R. W., Houman, F., and Kleckner, N. (1987) Gene 53, 85-96.
26. Groisman, E. A., and Casadaban, M. J. (1987) Gene 51, 77-84.
27. Groisman, E. A., and Casadaban, M. J. (1986) J. Bacteriol. 168, 357-364.
28. Kogoma, T., Farr, S. B., Joyce, K. M., and Natvig, D. O. (1988) Proc. Natl. Acad. Sci. USA 85, 4799-4803.
29. Mito, S., Zhang, Q. M., and Yonei, S. (1993) J. Bacteriol. 175, 2645-2651.
30. Koh, Y. S., and Roe, J. H. (1995) J. Bacteriol. 177, 2673-2678.
31. Spiro, S., Roberts, R. E., and Guest, J. R. (1989) Mol. Microbiol. 3, 601-608.
32. Green, J., and Guest, J. R. (1994) Mol. Microbiol. 12, 433-444.
33. Tsaneva, I. R., and Weiss, B. (1990) J. Bacteriol. 172, 4197-4205.
34. Nunoshiba, T., Hidalgo, E., Amabile Cuevas, C. F., and Demple, B. (1992) J. Bacteriol. 174, 6054-6060.
35. Wu, J., and Weiss, B. (1992) J. Bacteriol. 174, 3915-3920.
36. Nunoshiba, T., deRojas-Walker, T., Wishnok, J. S., Tannenbaum, S. R., and Demple, B. (1993) Proc. Natl. Acad. Sci. USA 90, 9993-9997.
37. Deutscher, M. P., Ed. (1990) Methods Enzymol. 182.
38. Olins, P. O., and Lee, S. C. (1993) Curr. Opin. Biotechnol. 4, 520-525.
39. Wu, J., Dunham, W. R., and Weiss, B. (1995) J. Biol. Chem. 270, 10323-10327.
40. Peters, J. W., Fisher, K., and Dean, D. R. (1995) Annu. Rev. Microbiol. 49, 335-366.
41. Green, J., and Guest, J. R. (1993) FEMS Microbiol. Lett. 113, 219-222.
42. Lazazzera, B. A., Bates, D. M., and Kiley, P. J. (1993) Genes Dev. 7, 1993-2005.
43. Khoroshilova, N., Beinert, H., and Kiley, P. J. (1995) Proc. Natl. Acad. Sci. USA 92, 2499-2503.
44. Storz, G., Tartaglia, L. A., and Ames, B. N. (1990) Science 248, 189-194.
45. Hidalgo, E., Nunoshiba, T., and Demple, B. (1994) Methods Mol. Genet. 3, 325-340.
46. Hidalgo, E., Bollinger, J. M., Jr., Bradley, T. M., Walsh, C. T., and Demple, B. (1995) J. Biol. Chem. 270, 20908-20914.
47. Hidalgo, E., Bollinger, J. M., Bradley, T. M., Walsh, C. T., and Demple, B. (1995) J. Biol. Chem. 270, 20908-20914.
48. Green, J., and Guest, J. R. (1993) FEBS Lett. 329, 55-58.
49. Sharrocks, A. D., Green, J., and Guest, J. R. (1991) Proc. R. Soc. London Ser. B Biol. Sci. 245, 219-226.
50. Storz, G., and Altuvia, S. (1994) Methods Enzymol. 234, 217-223.
51. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, Second ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
52. Becker, S., Holighaus, G., Gabrielczyk, T., and Unden, G. (1996) J. Bacteriol. 178, 4515-4521.
53. Kiley, P. J., and Reznikoff, W. S. (1991) J. Bacteriol. 173, 16-22.
54. Fridovich, I. (1995) Annu. Rev. Biochem. 64, 97-112.
55. Ding, H., and Demple, B. (1996) Proc. Natl. Acad. Sci. USA 93, 9449-9453.
56. Zheng, L., and Dean, D. R. (1994) J. Biol. Chem. 269, 18723-18726.
57. Nunoshiba, T. (1996) Crit. Rev. Euk. Gene Expr., in press.