메뉴 건너뛰기




Volumn 17, Issue 5, 1997, Pages 2649-2657

A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; MESSENGER RNA PRECURSOR; SERYLARGININE; SMALL NUCLEAR RIBONUCLEOPROTEIN; UNCLASSIFIED DRUG;

EID: 0030953470     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.17.5.2649     Document Type: Article
Times cited : (78)

References (53)
  • 1
    • 0029920331 scopus 로고    scopus 로고
    • Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation
    • Allain, F. H.-T., C. C. Gubser, P. W. A. Howe, K. Nagai, D. Neuhaus, and G. Varani. 1996. Specificity of ribonucleoprotein interaction determined by RNA folding during complex formation. Nature 380:646-650.
    • (1996) Nature , vol.380 , pp. 646-650
    • Allain, F.H.-T.1    Gubser, C.C.2    Howe, P.W.A.3    Nagai, K.4    Neuhaus, D.5    Varani, G.6
  • 2
    • 0027488624 scopus 로고
    • Isolation of new ribozymes from a large pool of random sequences
    • Bartel, D. P., and J. W. Szostak. 1993. Isolation of new ribozymes from a large pool of random sequences. Science 261:1411-1418.
    • (1993) Science , vol.261 , pp. 1411-1418
    • Barteld, P.1    Szostak, J.W.2
  • 3
    • 0026045893 scopus 로고
    • HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA
    • Bartel, D. P., M. L. Zapp, M. R. Green, and J. W. Szostak. 1991. HIV-1 Rev regulation involves recognition of non-Watson-Crick base pairs in viral RNA. Cell 67:529-536.
    • (1991) Cell , vol.67 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, J.W.4
  • 4
    • 0028129989 scopus 로고
    • Conserved structures and diversity of functions of RNA-binding proteins
    • Burd, C. G., and G. Dreyfuss. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621.
    • (1994) Science , vol.265 , pp. 615-621
    • Burd, C.G.1    Dreyfuss, G.2
  • 5
    • 0028215301 scopus 로고
    • RNA binding specificity of hnRNP A1: Significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing
    • Burd, C. G., and G. Dreyfuss. 1994. RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13:1197-1204.
    • (1994) EMBO J. , vol.13 , pp. 1197-1204
    • Burd, C.G.1    Dreyfuss, G.2
  • 6
    • 0028338991 scopus 로고
    • Characterization and cloning of the human splicing factor 9G8: A novel 35kDa factor of the serine/arginine protein family
    • Cavaloc, Y., M. Popielarz, J. P. Fuchs, R. Gattoni, and J. Stevenin. 1994. Characterization and cloning of the human splicing factor 9G8: a novel 35kDa factor of the serine/arginine protein family. EMBO J. 13:2639-2649.
    • (1994) EMBO J. , vol.13 , pp. 2639-2649
    • Cavaloc, Y.1    Popielarz, M.2    Fuchs, J.P.3    Gattoni, R.4    Stevenin, J.5
  • 7
    • 0025937073 scopus 로고
    • Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin
    • Champlin, D. T., M. Frasch, H. Saumweber, and J. T. Lis. 1991. Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. Genes Dev. 5:1611-1621.
    • (1991) Genes Dev. , vol.5 , pp. 1611-1621
    • Champlin, D.T.1    Frasch, M.2    Saumweber, H.3    Lis, J.T.4
  • 8
    • 0025777258 scopus 로고
    • Primary structure of a human arginine-rich nuclear protein that colocalizes with spliceosome components
    • Chaudhary, N. C., C. McMahon, and G. Blobel. 1991. Primary structure of a human arginine-rich nuclear protein that colocalizes with spliceosome components. Proc. Natl. Acad. Sci. USA 88:8189-8193.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 8189-8193
    • Chaudhary, N.C.1    McMahon, C.2    Blobel, G.3
  • 10
    • 0028609357 scopus 로고
    • Isozyme-specific inhibition of protein kinase C by RNA aptamers
    • Conrad, R., L. M. Keranen, A. D. Ellington, and A. C. Newton. 1994. Isozyme-specific inhibition of protein kinase C by RNA aptamers. J. Biol. Chem. 269:32051-32054.
    • (1994) J. Biol. Chem. , vol.269 , pp. 32051-32054
    • Conrad, R.1    Keranen, L.M.2    Ellington, A.D.3    Newton, A.C.4
  • 11
    • 0021100690 scopus 로고
    • Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei
    • Dignam, J. D., R. M. Lebovitz, and R. G. Roeder. 1983. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acid Res. 11:1475-1489.
    • (1983) Nucleic Acid Res. , vol.11 , pp. 1475-1489
    • Dignam, J.D.1    Lebovitz, R.M.2    Roeder, R.G.3
  • 12
    • 0027424442 scopus 로고
    • Specific commitment of different pre-mRNAs to splicing by single SR proteins
    • Fu, X.-D. 1993. Specific commitment of different pre-mRNAs to splicing by single SR proteins. Nature 365:82-85.
    • (1993) Nature , vol.365 , pp. 82-85
    • Fu, X.-D.1
  • 13
    • 0029372979 scopus 로고
    • The superfamily of arginine/serine-rich splicing factors
    • Fu, X.-D. 1995. The superfamily of arginine/serine-rich splicing factors. RNA 1:663-680.
    • (1995) RNA , vol.1 , pp. 663-680
    • Fu, X.-D.1
  • 14
    • 0026586528 scopus 로고
    • Isolation of a complementary DNA that encodes the mammalian splicing factor SC35
    • Fu, X.-D., and T. Maniatis. 1992. Isolation of a complementary DNA that encodes the mammalian splicing factor SC35. Science 256:535-538.
    • (1992) Science , vol.256 , pp. 535-538
    • Fu, X.-D.1    Maniatis, T.2
  • 15
    • 0026599345 scopus 로고
    • The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3′ splice site
    • Fu, X. D., and T. Maniatis. 1992. The 35-kDa mammalian splicing factor SC35 mediates specific interactions between U1 and U2 small nuclear ribonucleoprotein particles at the 3′ splice site. Proc. Natl. Acad. Sci. USA 89:1725-1729.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1725-1729
    • Fu, X.D.1    Maniatis, T.2
  • 16
    • 0025324948 scopus 로고
    • A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro
    • Ge, H., and J. L. Manley. 1990. A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro. Cell 62:25-34.
    • (1990) Cell , vol.62 , pp. 25-34
    • Ge, H.1    Manley, J.L.2
  • 17
    • 0025827463 scopus 로고
    • Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators
    • Ge, H., P. Zuo, and J. L. Manley. 1991. Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators. Cell 66: 373-382.
    • (1991) Cell , vol.66 , pp. 373-382
    • Ge, H.1    Zuo, P.2    Manley, J.L.3
  • 19
    • 0002705527 scopus 로고
    • In vitro genetic analysis: Selection and amplification of rare functional nucleic acids
    • Green, R., A. D. Ellington, D. P. Bartel, and J. W. Szostak. 1991. In vitro genetic analysis: selection and amplification of rare functional nucleic acids. Methods 2:75-86.
    • (1991) Methods , vol.2 , pp. 75-86
    • Green, R.1    Ellington, A.D.2    Bartel, D.P.3    Szostak, J.W.4
  • 20
    • 0025336085 scopus 로고
    • Cationic lipid-mediated co-transfection of insect cells
    • Groebe, D. R., A. E. Chung, and C. Ho. 1990. Cationic lipid-mediated co-transfection of insect cells. Nucleic Acids Res. 18:4033.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 4033
    • Groebe, D.R.1    Chung, A.E.2    Ho, C.3
  • 21
    • 0029114121 scopus 로고
    • The Drosophila SR protein RBP1 contributes to the regulation of doublesex alternative splicing by recognizing RBP1 RNA target sequences
    • Heinrichs, V., and B. S. Baker. 1995. The Drosophila SR protein RBP1 contributes to the regulation of doublesex alternative splicing by recognizing RBP1 RNA target sequences. EMBO J. 14:3987-4000.
    • (1995) EMBO J. , vol.14 , pp. 3987-4000
    • Heinrichs, V.1    Baker, B.S.2
  • 22
    • 85036441942 scopus 로고    scopus 로고
    • Hoffman, B. E. and J. T. Lis. Unpublished results
    • Hoffman, B. E., and J. T. Lis. Unpublished results.
  • 23
    • 0345005029 scopus 로고
    • Improved predictions of secondary structures for RNA
    • Jaeger, J. A., D. H. Turner, and M. Zuker. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86:7706-7710.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7706-7710
    • Jaeger, J.A.1    Turner, D.H.2    Zuker, M.3
  • 24
    • 0027083267 scopus 로고
    • The Drosophila RNA-binding protein RBP1 is localized to transcriptionally active sites of chromosomes and shows a functional similarity to human splicing factor ASF/SF2
    • Kim, Y. J., P. Zuo, J. L. Manley, and B. S. Baker. 1992. The Drosophila RNA-binding protein RBP1 is localized to transcriptionally active sites of chromosomes and shows a functional similarity to human splicing factor ASF/SF2. Genes Dev. 6:2569-2579.
    • (1992) Genes Dev. , vol.6 , pp. 2569-2579
    • Kim, Y.J.1    Zuo, P.2    Manley, J.L.3    Baker, B.S.4
  • 25
    • 0025346111 scopus 로고
    • Purification and characterization of pre-mRNA splicing factor SF2 from HeLa cells
    • Krainer, A. R., G. C. Conway, and D. Kozak. 1990. Purification and characterization of pre-mRNA splicing factor SF2 from HeLa cells. Genes Dev. 4:1158-1171.
    • (1990) Genes Dev. , vol.4 , pp. 1158-1171
    • Krainer, A.R.1    Conway, G.C.2    Kozak, D.3
  • 26
    • 0025743575 scopus 로고
    • Functional expression of cloned human splicing factor SF2: Homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators
    • Krainer, A. R., A. Mayeda, D. Kozak, and G. Binns. 1991. Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators. Cell 66:383-394.
    • (1991) Cell , vol.66 , pp. 383-394
    • Krainer, A.R.1    Mayeda, A.2    Kozak, D.3    Binns, G.4
  • 28
    • 0027990731 scopus 로고
    • The concentration of B52, an essential splicing factor and regulator of splice site choice, is critical for Drosophila development
    • Kraus, M. E., and J. T. Lis. 1994. The concentration of B52, an essential splicing factor and regulator of splice site choice, is critical for Drosophila development. Mol. Cell. Biol. 14:5350-5370.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 5350-5370
    • Kraus, M.E.1    Lis, J.T.2
  • 29
    • 0027314350 scopus 로고
    • Hel-N1: An autoimmune RNA-binding protein with specificity for 3′ uridylate-rich untranslated regions of growth factor mRNAs
    • Levine, T. D., F. Gao, P. H. King, L. G. Andrews, and J. D. Keene. 1993. Hel-N1: an autoimmune RNA-binding protein with specificity for 3′ uridylate-rich untranslated regions of growth factor mRNAs. Mol. Cell. Biol. 13: 3494-3504.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3494-3504
    • Levine, T.D.1    Gao, F.2    King, P.H.3    Andrews, L.G.4    Keene, J.D.5
  • 30
    • 0029767662 scopus 로고    scopus 로고
    • SR proteins and splicing control
    • Manley, J. L., and R. Tacke. 1996. SR proteins and splicing control. Genes Dev. 10:1569-1579.
    • (1996) Genes Dev. , vol.10 , pp. 1569-1579
    • Manley, J.L.1    Tacke, R.2
  • 31
    • 0026516573 scopus 로고
    • Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing
    • Mayeda, A., A. M. Zahler, A. Krainer, and M. Roth. 1992. Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing. Proc. Natl. Acad. Sci. USA 89:1301-1304.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 1301-1304
    • Mayeda, A.1    Zahler, A.M.2    Krainer, A.3    Roth, M.4
  • 32
    • 0001877802 scopus 로고
    • Splicing of precursors to mRNAs by the spliceosome
    • R. F. Gesteland and J. F. Atkins (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Moore, M. J., C. C. Query, and P. A. Sharp. 1993. Splicing of precursors to mRNAs by the spliceosome, p. 303-357. In R. F. Gesteland and J. F. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (1993) The RNA World , pp. 303-357
    • Moore, M.J.1    Query, C.C.2    Sharp, P.A.3
  • 33
    • 0028004607 scopus 로고
    • Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein completed with an RNA hairpin
    • Oubridge, C., N. Ito, P. R. Evans, C.-H. Teo, and K. Nagai. 1994. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein completed with an RNA hairpin. Nature 372:432-438.
    • (1994) Nature , vol.372 , pp. 432-438
    • Oubridge, C.1    Ito, N.2    Evans, P.R.3    Teo, C.-H.4    Nagai, K.5
  • 34
    • 0028832642 scopus 로고
    • Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor
    • Peng, X., and S. M. Mount. 1995. Genetic enhancement of RNA-processing defects by a dominant mutation in B52, the Drosophila gene for an SR protein splicing factor. Mol. Cell. Biol. 15:6273-6282.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 6273-6282
    • Peng, X.1    Mount, S.M.2
  • 35
    • 0028046121 scopus 로고
    • The SR protein B52/SRp55 is essential for Drosophila development
    • Ring, H. Z., and J. T. Lis. 1994. The SR protein B52/SRp55 is essential for Drosophila development. Mol. Cell. Biol. 14:7499-7506.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 7499-7506
    • Ring, H.Z.1    Lis, J.T.2
  • 36
    • 0025931225 scopus 로고
    • A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription
    • Roth, M. B., A. M. Zahler, and J. A. Stolk. 1991. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription. J. Cell Biol. 115:587-596.
    • (1991) J. Cell Biol. , vol.115 , pp. 587-596
    • Roth, M.B.1    Zahler, A.M.2    Stolk, J.A.3
  • 37
    • 0027104297 scopus 로고
    • Selection of high affinity RNA ligands to the bacteriophage R17 coat protein
    • Schneider, D., C. Tuerk, and L. Gold. 1992. Selection of high affinity RNA ligands to the bacteriophage R17 coat protein. J. Mol. Biol. 228:862-869.
    • (1992) J. Mol. Biol. , vol.228 , pp. 862-869
    • Schneider, D.1    Tuerk, C.2    Gold, L.3
  • 39
    • 0028307171 scopus 로고
    • Split genes and RNA splicing
    • Sharp, P. A. 1994. Split genes and RNA splicing. Cell 77:805-815.
    • (1994) Cell , vol.77 , pp. 805-815
    • Sharp, P.A.1
  • 40
    • 85036450107 scopus 로고    scopus 로고
    • Shi, H., and J. T. Lis. Unpublished results
    • Shi, H., and J. T. Lis. Unpublished results.
  • 41
    • 0001962451 scopus 로고
    • A manual of methods for baculo-virus vectors and insect cell culture procedures
    • Texas Agricultural Experiment Station, College Station
    • Summers, M. D., and G. E. Smith. 1987. A manual of methods for baculo-virus vectors and insect cell culture procedures. Bulletin no. 1555. Texas Agricultural Experiment Station, College Station.
    • (1987) Bulletin , vol.1555
    • Summers, M.D.1    Smith, G.E.2
  • 42
    • 0027715743 scopus 로고
    • General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer
    • Sun, Q., A. Mayeda, R. K. Hampson, A. R. Krainer, and F. M. Rottman. 1993. General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer. Genes Dev. 7:2598-2608.
    • (1993) Genes Dev. , vol.7 , pp. 2598-2608
    • Sun, Q.1    Mayeda, A.2    Hampson, R.K.3    Krainer, A.R.4    Rottman, F.M.5
  • 43
    • 0029064220 scopus 로고
    • The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities
    • Tacke, R., and J. L. Manley. 1995. The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14:3540-3551.
    • (1995) EMBO J. , vol.14 , pp. 3540-3551
    • Tacke, R.1    Manley, J.L.2
  • 44
    • 0029295966 scopus 로고
    • Dissecting protein:protein interactions between transcription factors with an RNA aptamer
    • Tian, Y., N. Adya, S. Wagner, C.-Z. Giam, M. R. Green, and A. D. Ellington. 1995. Dissecting protein:protein interactions between transcription factors with an RNA aptamer. RNA 1:317-326.
    • (1995) RNA , vol.1 , pp. 317-326
    • Tian, Y.1    Adya, N.2    Wagner, S.3    Giam, C.-Z.4    Green, M.R.5    Ellington, A.D.6
  • 45
    • 0025863411 scopus 로고
    • U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts
    • Tsai, D. E., D. S. Harper, and J. D. Keene. 1991. U1-snRNP-A protein selects a ten nucleotide consensus sequence from a degenerate RNA pool presented in various structural contexts. Nucleic Acids Res. 19:4931-4936.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4931-4936
    • Tsai, D.E.1    Harper, D.S.2    Keene, J.D.3
  • 46
    • 0025194307 scopus 로고
    • Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase
    • Tuerk, C., and L. Gold. 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249:505-510.
    • (1990) Science , vol.249 , pp. 505-510
    • Tuerk, C.1    Gold, L.2
  • 47
    • 0028353288 scopus 로고
    • Human monocyte chemoattractant protein-1 expressed in a baculovirus system
    • Ueda, A., S. Kawamoto, T. Igarashi, Y. Ishigatsubo, K. Tani, T. Okubo, and K. Okuda. 1994. Human monocyte chemoattractant protein-1 expressed in a baculovirus system. Gene 140:267-272.
    • (1994) Gene , vol.140 , pp. 267-272
    • Ueda, A.1    Kawamoto, S.2    Igarashi, T.3    Ishigatsubo, Y.4    Tani, K.5    Okubo, T.6    Okuda, K.7
  • 48
    • 0027137934 scopus 로고
    • Specific interactions between proteins implicated in splice site selection and regulated alternative splicing
    • Wu, J. Y., and T. Maniatis. 1993. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell 75:1061-1070.
    • (1993) Cell , vol.75 , pp. 1061-1070
    • Wu, J.Y.1    Maniatis, T.2
  • 49
    • 0002176755 scopus 로고
    • RNA structural elements and RNA function
    • R. F. Gesteland and J. F. Atkins (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Wyatt, J. R., and I. Tinoco, Jr. 1993. RNA structural elements and RNA function, p. 465-496. In R. F. Gesteland and J. F. Atkins (ed.), The RNA world. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (1993) The RNA World , pp. 465-496
    • Wyatt, J.R.1    Tinoco Jr., I.2
  • 50
    • 0026716104 scopus 로고
    • SR proteins: A conserved family of pre-mRNA splicing factors
    • Zahler, A. M., W. S. Lane, J. A. Stolk, and M. B. Roth. 1992. SR proteins: a conserved family of pre-mRNA splicing factors. Genes Dev. 6:837-847.
    • (1992) Genes Dev. , vol.6 , pp. 837-847
    • Zahler, A.M.1    Lane, W.S.2    Stolk, J.A.3    Roth, M.B.4
  • 51
    • 0027160003 scopus 로고
    • Distinct functions of SR proteins in alternative pre-mRNA splicing
    • Zahler, A. M., K. M. Neugebauer, W. S. Lane, and M. B. Roth. 1993. Distinct functions of SR proteins in alternative pre-mRNA splicing. Science 260:219-222.
    • (1993) Science , vol.260 , pp. 219-222
    • Zahler, A.M.1    Neugebauer, K.M.2    Lane, W.S.3    Roth, M.B.4
  • 52
    • 0028968629 scopus 로고
    • Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5′ splice sites
    • Zahler, A. M., and M. B. Roth. 1995. Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5′ splice sites. Proc. Natl. Acad. Sci. USA 92:2642-2646.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 2642-2646
    • Zahler, A.M.1    Roth, M.B.2
  • 53
    • 0024477261 scopus 로고
    • On finding all suboptimal foldings of an RNA molecule
    • Zuker, M. 1989. On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
    • (1989) Science , vol.244 , pp. 48-52
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.