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Volumn 121, Issue 3, 1997, Pages 521-526

Use of fluorescein-labeled oligonucleotide for analysis of formation and dissociation kinetics of T:A:T triple-stranded DNA: Effect of divalent cations

Author keywords

Divalent cations; Fluorescence; Fluorescence anisotropy; Kinetics; Triplex DNA

Indexed keywords

BARIUM ION; CALCIUM ION; DIVALENT CATION; FLUORESCEIN; MAGNESIUM ION; MANGANESE; METAL ION; NICKEL; OLIGONUCLEOTIDE;

EID: 0030949428     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.jbchem.a021617     Document Type: Article
Times cited : (13)

References (24)
  • 1
    • 0025251912 scopus 로고
    • Pairing of homologous DNA sequences by proteins: Evidence for three-stranded DNA
    • Hsieh, P., Camerini-Otero, C.S., and Camerini-Otero, R.D. (1990) Pairing of homologous DNA sequences by proteins: evidence for three-stranded DNA. Genes Dev, 4, 1951-1963
    • (1990) Genes Dev , vol.4 , pp. 1951-1963
    • Hsieh, P.1    Camerini-Otero, C.S.2    Camerini-Otero, R.D.3
  • 3
    • 0026639186 scopus 로고
    • Unusual stability of recombination intermediates made by Escherichia coli RecA protein
    • Müller, B., Burdett, I., and West, S.C. (1992) Unusual stability of recombination intermediates made by Escherichia coli RecA protein. EMBO J. 11, 2685-2693
    • (1992) EMBO J. , vol.11 , pp. 2685-2693
    • Müller, B.1    Burdett, I.2    West, S.C.3
  • 4
    • 0028954159 scopus 로고
    • Occurrence of three-stranded DNA within a RecA protein filament
    • Jain, S.K., Cox, M.M., and Inman, R.B. (1995) Occurrence of three-stranded DNA within a RecA protein filament. J. Biol. Chem. 270, 4943-4949
    • (1995) J. Biol. Chem. , vol.270 , pp. 4943-4949
    • Jain, S.K.1    Cox, M.M.2    Inman, R.B.3
  • 5
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • Moser, H.E. and Dervan, P.B. (1987) Sequence-specific cleavage of double helical DNA by triple helix formation. Science 238, 645-650
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 6
    • 0024802642 scopus 로고
    • Sequence-specific recognition and cleavage of duplex DNA via triple helix formation of oligonucleotides covalently linked to phenanthroline-copperchelate
    • François, J.C., Saison-Behmoaras, T., Barbier, C., Chasaignol, M., Thuong, N.T., and Hélène, C. (1989) Sequence-specific recognition and cleavage of duplex DNA via triple helix formation of oligonucleotides covalently linked to phenanthroline-copperchelate. Proc. Natl. Acad. Sci. USA 86, 9702-9706
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9702-9706
    • François, J.C.1    Saison-Behmoaras, T.2    Barbier, C.3    Chasaignol, M.4    Thuong, N.T.5    Hélène, C.6
  • 7
    • 0024357372 scopus 로고
    • Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation
    • Maher, L.J., III, Wold, B., and Dervan, P.B. (1989) Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation. Science 245, 725-730
    • (1989) Science , vol.245 , pp. 725-730
    • Maher III, L.J.1    Wold, B.2    Dervan, P.B.3
  • 8
    • 0025067487 scopus 로고
    • Dam methyltransferase sites located within the loop region of the oligopurine-oligopyrimidine sequences capable of forming H- DNA are undermethylated in vivo
    • Parniewski, P., Kwinkowski, M., Wilk, A., and Klysik, J. (1990) Dam methyltransferase sites located within the loop region of the oligopurine-oligopyrimidine sequences capable of forming H- DNA are undermethylated in vivo. Nucleic Acids Res. 18, 605- 611
    • (1990) Nucleic Acids Res. , vol.18 , pp. 605-611
    • Parniewski, P.1    Kwinkowski, M.2    Wilk, A.3    Klysik, J.4
  • 10
    • 0026587803 scopus 로고
    • Elucidation of the sequence-specific third- Strand recognition of four Watson-Crick base pairs in a pyrimidine triple-helix motif: T.AT, C.GC, T.CG and G.TA
    • Yoon, K., Hobbs, C.A., Koch, J., Sardaro, M., Kutny, R., and Weis, A.L. (1992) Elucidation of the sequence-specific third- strand recognition of four Watson-Crick base pairs in a pyrimidine triple-helix motif: T.AT, C.GC, T.CG and G.TA. Proc. Natl. Acad. Sci. USA 89, 3840-3844
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 3840-3844
    • Yoon, K.1    Hobbs, C.A.2    Koch, J.3    Sardaro, M.4    Kutny, R.5    Weis, A.L.6
  • 11
    • 0026454643 scopus 로고
    • Influence of pH on the equilibrium association constants for oligodeoxyribonucleotide- Directed triple helix formation at single DNA sites
    • Singleton, S.F. and Dervan, P.B. (1992) Influence of pH on the equilibrium association constants for oligodeoxyribonucleotide- directed triple helix formation at single DNA sites. Biochemistry 31, 10995-11003
    • (1992) Biochemistry , vol.31 , pp. 10995-11003
    • Singleton, S.F.1    Dervan, P.B.2
  • 12
    • 0026341239 scopus 로고
    • Sequence-selective recognition of DNA strand displacement with a thymine-substituted polyamide
    • Nielsen, P.E., Egholm, M., Berg, R.H., and Buchardt, O. (1991) Sequence-selective recognition of DNA strand displacement with a thymine-substituted polyamide. Science 254, 1497-1500
    • (1991) Science , vol.254 , pp. 1497-1500
    • Nielsen, P.E.1    Egholm, M.2    Berg, R.H.3    Buchardt, O.4
  • 13
    • 0027281792 scopus 로고
    • Thermodynamic and kinetic studies of DNA triplex formation of an oligohomopyrimidine and a matched duplex by filter binding assay
    • Shindo, H., Torigoe, H., and Sarai, A. (1993) Thermodynamic and kinetic studies of DNA triplex formation of an oligohomopyrimidine and a matched duplex by filter binding assay. Biochemistry 32, 8963-8969
    • (1993) Biochemistry , vol.32 , pp. 8963-8969
    • Shindo, H.1    Torigoe, H.2    Sarai, A.3
  • 14
    • 0028558883 scopus 로고
    • Direct measurement of thermodynamic and kinetic triple helix formation by fluorescence spectroscopy
    • Yang, M., Ghosh, S.S., and Millar, D.P. (1994) Direct measurement of thermodynamic and kinetic triple helix formation by fluorescence spectroscopy. Biochemistry 33, 15329-15337
    • (1994) Biochemistry , vol.33 , pp. 15329-15337
    • Yang, M.1    Ghosh, S.S.2    Millar, D.P.3
  • 16
    • 0025945566 scopus 로고
    • Binding of ethidium bromide to a DNA triplex
    • Scaria, P.V. and Shafer, R.H. (1991) Binding of ethidium bromide to a DNA triplex. J. Biol. Chem. 266, 5417-5432
    • (1991) J. Biol. Chem. , vol.266 , pp. 5417-5432
    • Scaria, P.V.1    Shafer, R.H.2
  • 17
    • 0027534081 scopus 로고
    • Methyl green, a DNA major- Groove binding drug
    • Kim, S.K. and Nordén, B. (1993) Methyl green, a DNA major- groove binding drug. FEBS Lett. 315, 61-64
    • (1993) FEBS Lett. , vol.315 , pp. 61-64
    • Kim, S.K.1    Nordén, B.2
  • 19
    • 0028881093 scopus 로고
    • Binding of RecA to anti-parallel poly(dA) · 2poly(dT) triple helix DNA
    • Kim, S.K., Takahashi, M., and Nordén, B. (1995) Binding of RecA to anti-parallel poly(dA) · 2poly(dT) triple helix DNA. Biochim. Biophys. Acta 1264, 129-133
    • (1995) Biochim. Biophys. Acta , vol.1264 , pp. 129-133
    • Kim, S.K.1    Takahashi, M.2    Nordén, B.3
  • 20
    • 0022508442 scopus 로고
    • Kinetic and equilibrium characterization of the Tet repressor-tetracycline complex by fluorescence measurements: Evidence for divalent ion requirement and energy transfer
    • Takahashi, M., Altschmied, L., and Hillen, W. (1986) Kinetic and equilibrium characterization of the Tet repressor-tetracycline complex by fluorescence measurements: evidence for divalent ion requirement and energy transfer. J. Mol. Biol. 187, 341-348
    • (1986) J. Mol. Biol. , vol.187 , pp. 341-348
    • Takahashi, M.1    Altschmied, L.2    Hillen, W.3
  • 21
    • 0027743418 scopus 로고
    • Selectivity of polyamines in triplex DNA stabilization
    • Thomas, T. and Thomas, T.J. (1993) Selectivity of polyamines in triplex DNA stabilization. Biochemistry 32, 14068-14074
    • (1993) Biochemistry , vol.32 , pp. 14068-14074
    • Thomas, T.1    Thomas, T.J.2
  • 22
    • 0025823653 scopus 로고
    • Polyamines favor DNA-triplex formation at neutral pH
    • Hampel, K.J., Crosson, P., and Lee, J.S. (1991) Polyamines favor DNA-triplex formation at neutral pH. Biochemistry 30, 4455-4459
    • (1991) Biochemistry , vol.30 , pp. 4455-4459
    • Hampel, K.J.1    Crosson, P.2    Lee, J.S.3
  • 24
    • 0027295047 scopus 로고
    • Cation and sequence effects on stability of intermolecular pyrimidine-purine-purine triplex
    • Malkov, V.A., Voloshin, O.N., Soyfer, V.N., and Frank-Kamenetskii, M.D. (1993) Cation and sequence effects on stability of intermolecular pyrimidine-purine-purine triplex. Nucleic Acids Res. 21, 585-591
    • (1993) Nucleic Acids Res. , vol.21 , pp. 585-591
    • Malkov, V.A.1    Voloshin, O.N.2    Soyfer, V.N.3    Frank-Kamenetskii, M.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.