Strategy for RNA recognition by yeast histidyl-tRNA synthetase

Bioorganic and Medicinal Chemistry

Volumn 5, Issue 6, 1997, Pages 1001-1009

  Rudinger, Joëlle ^a   Felden, Brice ^a,b   Florentz, Catherine ^a   Giegé, Richard ^a  

^a CNRS   (France)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSFER RNA LIGASE; HISTIDINE;

AMINOACYLATION; CONFERENCE PAPER; MOLECULAR RECOGNITION; NONHUMAN; PLANT VIRUS; PROTEIN SYNTHESIS; RNA SEQUENCE; RNA STRUCTURE; YEAST;

BASE SEQUENCE; HISTIDINE-TRNA LIGASE; MOLECULAR SEQUENCE DATA; RNA, FUNGAL; RNA, TRANSFER, AMINO ACYL; RNA, VIRAL; SACCHAROMYCES CEREVISIAE; SUBSTRATE SPECIFICITY;

BRASSICA RAPA SUBSP. RAPA; BROME MOSAIC VIRUS; BROMUS; NICOTIANA TABACUM; SATELLITE VIRUSES; TOBACCO MOSAIC VIRUS;

EID: 0030948634     PISSN: 09680896     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0968-0896(97)00061-8     Document Type: Conference Paper

References (56)

1. Freist, W. Biochemistry. 1989, 28, 6787.
2. Giegé, R.; Puglisi, J. D.; Florentz, C. Prog. Nucleic Acid Res. Mol. Biol. 1993, 45, 129.
3. Cusack, S.; Berthet-Colominas, C.; Härtlein, M.; Nassar, N.; Leberman, R. Nature (London) 1990, 347, 249.
4. Eriani, G.; Delarue, M.; Poch, O.; Gangloff, J.; Moras, D. Nature (London) 1990, 347, 203.
5. Sprinzl, M.; Steegborn, C.; Hübel, F.; Steinberg, S. Nucleic Acids Res. 1996, 24, 68.
6. Arcari, P.; Browlee, G. G. Nucleic Acids Res. 1980, 8, 5207.
7. Okimoto, R.; Wolstenholme, D. R. EMBO J. 1990, 9, 3405.
8. Mans, R. M. W.; Pleij, C. W. A.; Bosch, L. Eur. J. Biochem. 1991, 201, 303.
9. Florentz, C.; Giegé, R. In tRNA: Structure, Biosynthesis, and Function; Söll, D.; RajBhandary, U. L., Eds.; American Society of Microbiology: Washington, DC, 1995; pp 141-163.
10. The necessity of aminoacylation of tRNA-like structures for viral RNA replication has been explicitly demonstrated in the case of TYMV, although the nature of the amino acid is not mandatory in this process (ref 49). For RNA from BMV, known as a tyrosine acceptor (ref 14), tyrosylation is not requested for replication but the necessity of an aminoacylation by another amino acid cannot be excluded yet (discussed in ref 50). Nothing is yet known in the case of TMV RNA.
11. Komine, Y.; Kitabatake, M.; Yokogawa, T.; Nishikawa, K. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 9223.
12. Keiler, K. C.; Waller, R. H.; Sauer, R. T. Science 1996, 271, 990.
13. Graffe, M.; Dondon, J.; Caillet, J.; Romby, P.; Ehresmann, C.; Ehresmann, B.; Springer, M. Science 1992, 255, 994.
14. Oberg, B.; Philipson, L. Biochem. Biophys. Res. Commun. 1972, 48, 927.
15. Felden, B.; Florentz, C.; McPherson, A.; Giegé, R. Nucleic Acids Res. 1994, 22, 2882.
16. Rudinger, J.; Florentz, C.; Dreher, T.; Giegé, R. Nucleic Acids Res. 1992, 20, 1865.
17. Felden, B.; Daull, P.; Florentz, C.; Giegé, R. 1996, submitted.
18. McClain, W. H. J. Mol. Biol. 1993, 234, 257.
19. Saks, M. E.; Sampson, J. R.; Abelson, J. N. Science 1994, 263, 191.
20. Martinis, S. A., Schimmel, P. In tRNA: Structure, Biosynthesis, and Function; Söll, D.; RajBhandary, U. L., Eds.; Amercian Society of Microbiology: Washington, DC, 1995; pp 349-370.
21. McClain, W.; Foss, K.; Jenkins, R. A.; Schneider, J. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 9272.
22. Perret, V.; Florentz, C.; Puglisi, J. D.; Giegé, R. J. Mol. Biol. 1992, 226, 323.
23. Frugier, M.; Florentz, C.; Schimmel, P.; Giegé, R. Biochemistry 1993, 32, 14053.
24. Hou, Y.-M.; Westhof, E.; Giegé, R. Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 6776.
25. Puglisi, J. D.; Pütz, J.; Florentz, C.; Giegé, R. Nucleic Acids Res. 1993, 21, 41.
26. Rould, M. A.; Perona, J. J.; Söll, D.; Steitz, T. A. Science 1989, 246, 1135.
27. Ruff, M.; Krishnaswamy, S.; Boeglin, M.; Poterszman, A.; Mitschler, A.; Podjarny, A.; Rees, B.; Thierry, J.-C.; Moras, D. Science 1991, 252, 1682.
28. Rees, B.; Cavarelli, J.; Moras, D. Biochimie 1996, 78, 624.
29. Orellana, O.; Cooley, L.; Söll, D. Mol. Cell. Biol. 1986, 6, 525.
30. Kirsebom, L. A.; Svärd, S. G. Nucleic Acids Res. 1992, 20, 425.
31. Cooley, L.; Appel, B.; Söll, D. Proc. Natl. Acad. Sci. U.S.A. 1982, 79, 6475.
32. Crothers, D. M.; Seno, T.; Söll, D. G. Proc. Natl. Acad. Sci. U.S.A. 1972, 69, 3063.
33. Himeno, H.; Hasegawa, T.; Ueda, T.; Watanabe, K.; Miura, K.; Shimizu, M. Nucleic Acids Res. 1989, 17, 7855.
34. Francklyn, C.; Schimmel, P. Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 8655.
35. Yan, W.; Francklyn, C. J. Biol. Chem. 1994, 269, 10022.
36. Rudinger, J.; Florentz, C.; Giegé. R. Nucleic Acids Res. 1994, 22, 5031.
37. Nameki, N.; Asahara, H.; Shimizu, M.; Okada, N.; Himeno, H. Nucleic Acids Res. 1995, 23, 389.
38. Arnez, J.; Harris, D. C.; Mitschler, A.; Rees, B.; Francklyn, C.; Moras, D. EMBO J. 1995, 14, 4143.
39. Dumas, P.; Moras, D.; Florentz, C.; Giegé, R.; Verlaan, P.; Belkum, A. V.; Pleij, C. W. A. J. Biomol. Struct. Dyn. 1987, 4, 707.
40. Felden, B.; Florentz, C.; Giegé, R.; Westhof, E. J. Mol. Biol. 1994, 235, 508.
41. Felden, B.; Florentz, C.; Giegé, R.; Westhof, E. RNA 1996, 2, 201.
42. Felden, B.; Florentz, C.; Westhof, E.; Giegé. R. Biochimie 1993, 75, 1143.
43. Felden, B. Thesis, Université Louis Pasteur, Strasbourg, 1994.
44. Bonnet, J.; Ebel, J.-P. Eur. J. Biochem. 1972, 31, 335.
45. Giegé, R.; Briand, J.-P.; Mengual, R.; Hirth, L. Eur. J. Biochem. 1978, 84, 251.
46. Puglisi, J. D.; Wyatt, J. R.; Tinoco, I. Acc. Chem. Res. 1991, 24, 152.
47. Westhof, E.; Jaeger, L. Curr. Opin. Struct. Biol. 1992, 2, 327.
48. Pleij, C. W. A. Curr. Opin. Struct. Biol. 1994, 4, 337.
49. In the BMV tRNA-like structure, loop L3 is particularly long (94 nucleotides) and possesses itself an internal structure comprising the entire anticodon branch (D and AC domains) and structural domains not belonging to the tRNA mimicry (see Fig. 1C).
50. Massire, C.; Gaspin, C; Westhof, E. J. Mol. Graphics 1994, 12, 201.
51. In tRNA-like structures, numbering starts at the 3′-end.
52. Dreher, T. W.; Tsai, C. H.; Skuzeski, J. M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 12212.
53. Giegé, R. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 12078.
54. Felden, B.; Giegé, R. 1996, submitted.
55. Florentz, C.: Dreher, T. W.; Rudinger, J.; Giegé, R. Eur. J. Biochem. 1991, 195, 229.
56. Dreher, T. W.; Tsai, C. H.; Florentz, C.; Giegé, R. Biochemistry 1992, 31, 9183.