Electrostatic characterization of enzyme complexes: Evaluation of the mechanism of catalysis of dihydrofolate reductase

Journal of the American Chemical Society

Volumn 119, Issue 10, 1997, Pages 2386-2395

  Cannon, William R ^a   Garrison, Barbara J ^a   Benkovic, Stephen J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIHYDROFOLATE REDUCTASE;

ARTICLE; COMPLEX FORMATION; CRYSTALLOGRAPHY; ENZYME ACTIVITY; ENZYME BINDING; PKA; QUANTUM CHEMISTRY; RAMAN SPECTROMETRY; SPECTROPHOTOMETRY;

EID: 0030944408     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja962621r     Document Type: Article

References (57)

1. Fierke, C. A.; Johnson, K. A.; Benkovic, S. J. Biochemistry 1987, 26, 4085-4092.
2. Cayley, P. J.; Dunn, M. J.; King, R. W. Biochemistry 1981, 20, 874-879.
3. Dunn, S. M.; Lanigan, T. M.; Howell, E. E. Biochemistry 1990, 29, 8569-8576.
4. Huang, F. Y.; Yang, Q. X.; Huang, T. H. FEBS Lett. 1991, 289, 231-234.
5. Falzone, C. J.; Wright, P. E.; Benkovic, S. J. Biochemistry 1991, 30, 2184-2191.
6. Andrews, J.; Fierke, C. A.; Birdsall, B.; Ostler, G.; Feeney, J.; Roberts, G. C. K.; Benkovic, S. J. Biochemistry 1989, 28, 5743-5750.
7. Appleman, J. R.; Beard, W. A.; Delcamp, T. J.; Prendergast, N. J.; Freisheim, J. H.; Blakely, R. L. J. Biol. Chem. 1990, 265, 2740-2748.
8. Thillet, J.; Adams, J. A.; Benkovic, S. J. Biochemistry 1990, 29, 5195-5202.
9. Gready, J. Biochemistry 1985, 24, 4761-4766.
10. Morrison, J. F.; Stone, S. R. Biochemistry 1988, 27, 5499-5506.
11. Uchimaru, T.; Tsuzuki, S.; Tanabe, K.; Benkovic, S. J.; Furukawa, K.; Taira, K. Biochem. Biophys. Res. Commun. 1989, 161, 64-68.
12. (a) Bystroff, C.; Oatley, S. J.; Kraut, J. Biochemistry 1990, 29, 3263-3277.
13. (b) McTigue, C.; Davies, J. F.; Kaufman, B. T.; Kraut, J. Biochemistry 1992, 31, 7264-7273.
14. (c) Reyes, V. M.; Sawaya, M. R.; Brown, K. A.; Kraut, J. Biochemistry 1995, 34, 2710-2723.
15. Chen, Y. Q.; Kraut, J.; Blakely, R. L.; Callender, R. Biochemistry 1994, 33, 7021-7026.
16. Honig, B.; Nicholls, A. Science 1995, 268, 1144-1149.
17. Bashford, D.; Karplus, M. Biochemistry 1990, 29, 10219-10225.
18. Antosiewicz, J.; McCammon, J. A.; Gilson, M. K. J. Mol. Biol. 1994, 238, 415-436.
19. Richards, F. M. Annu. Rev. Biophys. Bioeng. 1977, 6, 151-176.
20. Gilson, M. K. Proteins: Struct., Funct., Genet. 1993, 15, 266-282.
21. Stryer, L. Biochemistry, 2nd ed.; W. H. Freeman and Co.: New York, 1981.
22. Nozaki, Y.; Tanford, C. Methods Enzymol. 1967, 11, 715-734.
23. Lachmann, H.; Schnackerz, K. D. Org. Magn. Reson. 1984, 22, 101-105.
24. Potter, M. J.; Gilson, M. K.; McCammon, J. A. J. Am. Chem. Soc. 1994, 116, 10298-10299.
25. Molecular Simulations, Inc., San Diego, CA.
26. Frisch, M.; Head-Gordon, M.; Trucks, G.; Foresman, J.; Schlegel, H.; Raghavachari, K.; Robb, M.; Binkley, J.; Gonzalez, C.; Defrees, D.; Fox, D.; Whiteside, R.; Seeger, R.; Melius, C.; Baker, J.; Martin, R.; Kahn, L.; Stewart, J.; Topiol, S.; Pople, J., Gaussian, Inc., Pittsburgh, PA, 1992.
27. Breneman, C.; Wiberg, K. J. Comput. Chem. 1990, 11, 361-373.
28. Cannon, W. R.; Garrison, B. J.; Benkovic, S. J. Manuscript in preparation.
29. Adams, J. A.; Fierke, C. A.; Benkovic, S. J. Biochemistry 1991, 30, 11046-11054.
30. Kraulis, P. J. J. Appl. Crystallogr. 1991, 24, 946-950.
31. Feeney, J.; Birdsall, B.; Roberts, G.; Burgen, A. Nature 1975, 257, 564-566.
32. Cayley, P. J., Feeney, J.; Kimber, B. J. Int. J. Biol. Macromol. 1980, 2, 251-255.
33. Gerothanassis, I. P.; Barrie, P. J.; Birdsall, B.; Feeney, J. Eur. J. Biochem. 1994, 226, 211-218.
34. You, T. J.; Bashford, D. Biophys. J. 1995, 69, 1721-1733.
35. Cannon, W. R.; Singleton, S. F.; Benkovic, S. J. Nature Struct. Biol. 1996, 3, 821-833.
36. Falzone, C. J.; Wright, P. E.; Benkovic, S. J. Biochemistry 1994, 33, 439-442.
37. Li, L.; Falzone, C. J.; Wright, P. E.; Benkovic, S. J. Biochemistry 1992, 31, 7826-7833.
38. Epstein, D. M.; Wright, P. E.; Benkovic, S. J. Biochemistry 1995, 34, 11037-11048.
39. Gekko, K.; Yamagami, K.; Kunori, Y.; Ichihara, S.; Kodama, M.; Iwakura, M. J. Biochem. 1993, 112, 74-80.
40. (a) Bajorath, J.; Li, Z.; Fitzgerald, G.; Kitson, D. H.; Farnum, M.; Fine, R. M.; Kraut, J.; Hagler, A. T. Proteins: Struct., Funct., Genet. 1991, 11, 263-270.
41. (b) Bajorath, J.; Kraut, J.; Li, Z.; Kitson, D. H.; Hagler, A. T. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 6423-6426.
42. Hehre, W. J.; Radom, L.; Schleyer, P. v.; Pople, J. A. Ab Initio Molecular Orbital Theory; Wiley-Interscience: New York, 1986.
43. Benkovic, S. J.; Sammons, D.; Armarego, W. L. F.; Waring, P.; Inners, R. J. Am. Chem. Soc. 1985, 107, 3706-3712.
44. Chen, J. T.; Mayer, R. J.; Fierke, C. A.; Benkovic, S. J. J. Cell. Biochem. 1985, 29, 73-82.
45. Adams, J.; Johnson, K.; Mathews, R.; Benkovic, S. J. Biochemistry 1989, 28, 6611-6618.
46. Appleman, J. R.; Tsay, J. T.; Freisheim, J. H.; Blakely, R. L. Biochemistry 1992, 31, 3709-3715.
47. Blakely, R. L.; Appleman, J. R.; Freisheim, J. H.; Jablonsky, M. J. Arch,. Biochem. Biophys. 1993, 306, 501-509.
48. Cheung, H.; Birdsall, B.; Frenkiel, T. A.; Chau, D. D.; Feeney, J. Biochemistry 1993, 32, 6846-6854.
49. Selinsky, B. S.; Perlman, M. E.; London, R. E.; Unkefer, C. J.; Mitchell, J.; Blakely, R. L. Biochemistry 1990, 29, 1290-1296.
50. Gilson, M. K.; Rashin, A.; Fine, R.; Honig, B. J. Mol. Biol. 1985, 183, 503-516.
51. Gilson, M. K.; Honig, B. H. Proteins: Struct. Funct., Genet. 1988, 4, 7-18.
52. Wagner, C. R.; Thillet, J.; Benkovic, S. J. Biochemistry 1992, 31, 7834-7840.
53. Northrup, S. H.; McCammon, J. A. J. Am. Chem. Soc. 1984, 106, 930-934.
54. Beard, W. A.; Appleman, J. R.; Delcamp, T. J.; Feisheim, J. H.; Blakely, R. L. J. Biol. Chem. 1989, 264, 9391-9399.
55. Saenger, W. Principles of Nucleic Acid Structure; Springer-Verlag: New York, 1984.
56. Maharaj, G.; Selinsky, B. S.; Appleman, J. R.; Perlman, M.; London, R. E.; Blakely, R. L. Biochemistry 1990, 29, 4554-4560.
57. Poe, M. J. Biol. Chem. 1977, 252, 3724-3728.