Protein folding and wring resonances

Biophysical Chemistry

Volumn 63, Issue 2-3, 1997, Pages 97-105

  Bohr, J ^a   Bohr, H ^a   Brunak, S ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

Cold and hot denaturation; Excitations; Linking; Protein folding; Resonator

Indexed keywords

ARTICLE; MODEL; MOLECULAR DYNAMICS; PRIORITY JOURNAL; PROTEIN FOLDING; QUANTUM MECHANICS; TEMPERATURE;

EID: 0030942913     PISSN: 03014622     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0301-4622(96)02249-1     Document Type: Article

References (63)

1. G. von Heijne and C. Blomberg, J. Mol. Biol., 117 (1977) 821.
2. M.A. Wouters and P.M.G. Curmi, Proteins, 22 (1995) 119.
3. T.J. Hubbard and J. Park, Proteins, 23 (1995) 398.
4. O.C. Ivanov and B. Förtsch, Origins Life, 17 (1986) 35.
5. B.A. Fedorov, FEBS Lett., 62 (1976) 139.
6. W.R. Taylor and K. Hatrick, Protein Eng., 7 (1994) 341.
7. I.N. Shindyalov, N.A. Kolchanov and C. Sander, Protein Eng., 7 (1994) 349.
8. U. Gobel, C. Sander, R. Schneider and A. Valencia, Proteins, 18 (1994) 309.
9. G.M. Crippen, Biopolymers, 16 (1977) 2189.
10. C. Sander, Biochem. Soc. Symp., 57 (1990) 25.
11. L. Holm and C. Sander, Proteins, 19 (1994) 165.
12. G.M. Crippen and V.N. Maiorov, J. Mol. Biol., 252 (1995) 144.
13. S.H. White and R.E. Jacobs, J. Mol. Evol., 36 (1993) 79.
14. S.H. White, J. Mol. Evol., 38 (1994) 383.
15. A.L. Berman, E. Kolker and E.N. Trifonov, Proc. Natl. Acad. Sci. U.S.A., 91 (1994) 4044.
16. R.L. Baldwin, Trends Biochem. Sci., 11 (1986) 6.
17. P.E. Wright, H.S. Dyson and R.A. Lerner, Biochemistry, 27 (1988) 7167.
18. J.P. Waltho, V.A. Feher, G. Merutka, H.S. Dyson and P.E. Wright, Biochemistry, 32 (1993) 6337.
19. T.R. Sosnick, L. Mayne and S.W. Englander, Biophys. J., 70 (1996) A378.
20. D,B. Wetlaufer and S. Ristow, Annu. Rev. Biochem., 42 (1973) 135.
21. R.L. Baldwin, Annu. Rev. Biochem., 44 (1975) 453.
22. C.B. Anfinsen and H.A. Scheraga, Adv. Protein Chem., 29 (1975) 205.
23. T.E. Creighton, J. Mol. Biol., 113 (1977) 329.
24. K.A. Dill, S. Bromberg, K. Yue, K.M. Fiebig, D.P. Yee, P.D. Thomas and H.S. Chan, Protein Sci., 4 (1995) 561.
25. R.A. Goldstein, Z.A. Luthey-Schulten and P.G. Wolynes, Proc. Natl, Acad. Sci. U.S.A., 89 (1992) 4918.
26. H.G. Bohr and P.G. Wolynes, Phys. Rev. A, 46 (1992) 5242.
27. E.I. Shahknovich, Phys. Rev. Lett., 72 (1994) 3907.
28. J.D. Bryngelson, J.N. Onuchic, N.D. Socci and P.G. Wolynes, Proteins, 21 (1995) 167.
29. T.E. Creighton, Proteins, Structure and Molecular Properties, 2nd edn., New York, Freeman, 1993.
30. M.L. Mansfield, Nature Struct. Biol., 1 (1994) 213.
31. J. Richardson, Adv. Protein Chem., 34 (1981) 167.
32. C. Chothia and A.V. Finkelstein, Annu. Rev. Biochem., 59 (1990) 1007.
33. J.U. Bowie, R. Luthy and D. Eisenberg, Science, 253 (1991) 164.
34. C. Chothia, Nature, 357 (1992) 543.
35. F.B. Fuller, Proc. Natl. Acad. Sci. U.S.A., 68 (1971) 815.
36. F.H. Crick, Proc. Natl. Acad. Sci. U.S.A., 73 (1976) 2639.
37. F.B. Fuller, Proc. Natl. Acad. Sci. U.S.A., 75 (1978) 3557.
38. W. Helfrich, Z. Naturforsch., Teil C, 28 (1973) 693.
39. W. Helfrich and W. Harbich, in D. Langevin and N. Boccasa (Eds.), Physics of Amphiphilic Layers, Vol. 58, Springer, Berlin, 1987, pp. 58-63.
40. H. Bohr and J.H. Ipsen, in H. Bohr (Ed.), Characterizing Complex Systems, World Scientific, Singapore, 1989, pp. 74-79.
41. J.H. White, Am. J. Math., 91 (1969) 693.
42. R.E. Goldstein and S. Leibler, Phys. Rev. Lett., 61 (1988) 2213.
43. S. Rackovsky and H.A. Scheraga, Macromolecules, 11 (1978) 1168.
44. S. Rackovsky and H.A. Scheraga, Macromolecules, 13 (1980) 1440.
45. M. Levitt, J. Mol. Biol., 170 (1983) 723.
46. P. De Santis, S. Morosetti and A. Palleschi, Biopolymers, 22 (1983) 37.
47. S. Chiavarini, P. De Santis, S. Morosetti and A. Palleschi, Biopolymers, 23 (1984) 1547.
48. W.F. Pohl, Math. Intelligence, 3 (1980) 20.
49. L.H. Kauffman, Knots and Physics, World Scientific, Singapore, 1991.
50. E. Haas, M. Wilchek, E. Katchalski-Katzir and I.Z. Steinberg, Proc. Natl. Acad. Sci. U.S.A., 72 (1975) 1807.
51. B.S. Fujimoto, J.H. Shibata, R.L. Schurr and J.M. Schurr, Biopolymers, 24 (1985) 1009.
52. H.B. Gray, Jr. and J.E. Hearst, J. Mol. Biol., 35 (1968) 111.
53. J. Janin and S. Wodak, Prog. Biophys. Mol. Biol., 42 (1983) 21.
54. J. Kendrew, The Encyclopedia of Molecular Biology, Blackwell Science, Oxford, 1994.
55. V. Glushko, P.J. Lawson and F.R.N. Gurd, J. Biol. Chem., 247 (1972) 3176.
56. T.J. Buchanan, G.H. Haggis, J.B. Hasted and B.G. Robinson, Proc. R. Soc. London, Ser. A, 213 (1952) 379.
57. S.C. Harvey and P. Hoekstra, J. Phys. Chem., 76 (1972) 2987.
58. N. Miura, N. Asaka, N. Shinyashiki and S. Mashimo, Biopolymers, 34 (1994) 357.
59. Y.V. Griko, P.L. Privalov and S.Y. Venyaminov, J. Mol. Biol., 202 (1988) 127.
60. G. Mer, H. Hietter and J.-F. Lefévre, Nature Struct. Biol., 3 (1996) 45.
61. F. Parak, E.W. Knapp, and D. Kucheida, J. Mol. Biol., 161 (1982) 177.
62. G.N. Phillips, R.M. Arduini, B.A. Springer and S.G Sligar, Proteins, 7 (1990) 358.
63. L.A. Findsen, S. Subramaniam, V. Lounnas and B.M. Pettitt, in A.D. Buckingham, A.C. Legon and S.M. Roberts (Eds.), Principles of Molecular Recognition, Blackie Academic and Professional, London, 1993.