New ultrarare restriction site-carrying transposons for bacterial genomics

Gene

Volumn 187, Issue 2, 1997, Pages 273-279

  Mahillon, Jacques ^a   Rode, Christopher K ^b   Léonard, Catherine ^a   Bloch, Craig A ^b  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

Chromosomal mapping; I CeuI; I SceI; Insertion sequences; IS10 Tn10; Meganuclease; Transposase

Indexed keywords

CONTIG; DNA FRAGMENT; PLASMID VECTOR;

ARTICLE; BACTERIAL GENETICS; ESCHERICHIA COLI; GENETIC DISTANCE; INTRON; NONHUMAN; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION SITE; TRANSPOSON; YEAST;

ANIMALS; BINDING SITES; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA TRANSPOSABLE ELEMENTS; ENDODEOXYRIBONUCLEASES; ESCHERICHIA COLI; GENOME, BACTERIAL; GRAM-NEGATIVE BACTERIA;

BACTERIA (MICROORGANISMS); ESCHERICHIA; ESCHERICHIA COLI K12; EUKARYOTA; PROKARYOTA;

EID: 0030935888     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(96)00766-4     Document Type: Article

References (20)

1. Bachmann, B.J. (1987) Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In: Neidhardt, F.C., Ingraham, J.L., Low, K.B., Magasanik, B., Schaechter, M. and Umbarger, H.E. (Eds.), Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology. American Society for Microbiology, Washington, DC, pp. 1190-1219.
2. Bender, J. and Kleckner, N. (1992) IS10 transposase mutations that specifically alter target site recognition. EMBO J. 11, 741-750.
3. Bloch, C.A., Rode, C.K., Obreque, V. and Russell, K.Y. (1994) Comparative genome mapping with mobile physical map landmarks. J. Bacteriol. 176, 7121-7125.
4. Bloch, C.A., Rode, C.K., Obreque, V. and Mahillon, J. (1996) Purification of Escherichia coli chromosomal segments without cloning. Biochem. Biophys. Res. Commun. 223, 104-111.
5. Colleaux, L., d'Auriol, L., Galibert, F. and Dujon, B. (1988) Recognition and cleavage site of the intron-encoded omega transposase. Proc. Natl. Acad. Sci., USA, 85, 6022-6026.
6. Dower, W.J., Miller, J.F. and Ragsdale, C.W. (1988) High efficiency transformation of Escherichia coli by high voltage electroporation. Nucleic Acids Res. 16, 6127-6145.
7. Gauthier, A., Turmel, M. and Lemieux, C. (1991) A group I intron in the chloroplast large subunit rRNA gene of Chlamydomonas eugametos encodes a double-strand endonuclease that cleaves the homing site of this intron. Curr. Genet. 19, 43-47.
8. Gibson, T.J. (1984) Studies on the Epstein-Barr virus genome. Ph.D. thesis, Cambridge University, UK.
9. Hiller, B., Frey, B. and Schumann, W. (1994) Tn5Map, a transposon for the rapid mapping of restriction sites in plasmids. FEMS Microbiol. Lett. 115, 151-156.
10. Jumas-Bilak, E., Maugard, C., Michaux-Charachon, S., Allardet-Servent, A., Perrin, A., O'Callaghan, D. and Ramuz, M. (1995) Study of the organization of the genomes of Escherichia coli, Brucella melitensis and Agrobacterium tumefaciens by insertion of a unique restriction site. Microbiology 141, 2425-2432.
11. Kleckner, N., Bender, J. and Gottesman, S. (1991) Uses of transposons, with emphasis on Tn10. Methods Enzymol. 204, 139-180.
12. Mahillon, J. and Kleckner, N. (1992) New IS10 transposition vectors based on a Gram-positive replication origin. Gene 116, 69-74.
13. Murphy, E. (1985) Nucleotide sequence of a spectinomycin adenyl-transferase AAD (9) determinant from Staphylococcus aureus and its relationship to AAD(3′) (9). Mol. Gen. Genet. 200, 33-39.
14. Rode, C.K., Obreque, V.H. and Bloch, C.A. (1995) New tools for integrated genetic and physical analyses of the Escherichia coli chromosome. Gene 166, 1-9.
15. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2nd edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
16. Steinmetz, M. and Richter, R. (1994) Easy cloning of mini-Tn10 insertions from the Bacillus subtilis chromosome. J. Bacteriol. 176, 1761-1763.
17. Sternberg, N.L. and Maurer, R. (1991) Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium. Meth. Enzymol. 204, 18-43.
18. Szybalski, W. (1993) From the double-helix to novel approaches to the sequencing of large genomes. Gene 135, 279-290.
19. Thierry, A., Perrin, A., Boyer, J., Fairhead, C., Dujon, B., Frey, B. and Schmitz, G. (1991) Cleavage of yeast and bacteriophage T7 genomes at a single site using the rare cutter endonuclease I-SceI. Nucleic Acids Res. 19, 189-190.
20. Trieu-Cuot, P. and Courvalin, P. (1983) Nucleotide sequence of the Streptococcus faecalis plasmid gene encoding the 3′5″-aminoglycoside phosphotransferase type III. Gene 23, 331-341.