Recognition of 3-processing sites of human mrna precursors

Bioinformatics

Volumn 13, Issue 1, 1997, Pages 23-28

  Salamovand, A A ^a   Solovyev, V V ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA PRECURSOR; POLYADENYLIC ACID;

ALGORITHM; ARTICLE; COMPUTER PROGRAM; DISCRIMINANT ANALYSIS; PRIORITY JOURNAL; RNA PROCESSING;

EID: 0030932502     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/13.1.23     Document Type: Article

References (16)

1. AfifiA A. and Azen, S.P. (1979) Statistical Analysis. A Computer Oriented Approach. Academic Press, New York.
2. Benson, D., Lipmann, D.J. and Ostell, J. (1993) GenBank. Nucleic Acids Res., 21, 2963-2965.
3. Burset.M. and Guigo.R. (1996) Evaluation of gene structure prediction programs. Cenomics, in press.
4. Decker, C.J. and Parker, R. (1995) Diversity of cytopasmatic functions for the 3'-untranslated region of eukaryotic transcripts. Curr. Opin. Cell Biol., 1995, 7, 386-392.
5. Kondrakhin, Y.V., Shamin.V.V. and Kolchanov, N.A. (1994) Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3-terminal processing sites. Comput. Applic. Biosci., 10, 597-603.
6. Kulp, D., Haussler, D., Rees, M. and Eeckman, F. A generalized Hidden Markov Model for the recognition of human genes in DNA. In Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (eds. States, D., Agarwal.P., Gaasterland.T., Hunter.L. and Smith, R.), St. Louis, AAAI Press, 1996, 134-142.
7. McCarthy, E. and Kollmus, H. Cytoplasmic mRNA-protein interactions in eukaryotic gene expression. Trends Biochem. Sci., May 20, 191-197.
8. McLauchlan, J., Gaffney, D., Whitton, J.L. and Clements, J.B. (1985) The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3' termini. Nucleic Acids Res., 13, 1347-1367.
9. Manley, J.L. (1995) A complex protein assembly catalyzes polyadenylation of mRNA precursors. Curr. Opin. Genet. Dev., 5, 222-228.
10. Proudfoot, N.J. (1991) Poly(A) signals Cell, 64, 617-674.
11. Solovyev, V.V., Salamov, A.A. and Lawrence, C.B. (1994) Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames. Nucleic Acids Res., 22, 5156-5163.
12. Solovyev, V.V., Salamov, A.A. and Lawrence, C.B. (1995) Prediction of human gene structure using linear discriminant functions and dynamic programming. In Rawling.C, Clark.D., Altman.R., Hunter, L., Lengauer.T. and Wodak, S. (eds), Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Cambridge, UK, pp. 367-375.
13. Wahle, E. (1995) 3'-end cleavage and polyadelanytion of mRNA precursor. Biochim. Biophys. Acta, 1261, 183-194.
14. Wahler.E. and Keller, W. (1992) The biochemistry of the 3'-end cleavage and polyadenylation of mRNA precursors. Annu. Rev. Biochem.,61, 419-440.
15. WiIusz, J., Shenk, T., Takagaki.Y. and Manley, J.L. (1990) A multicomponent complex is required for the AAUAAA-dependent cross-linking of a 64-kilodalton protein to polyadenylation substrates. Mol. Cell. Biol., 10, 1244-1248.
16. Yada, T., Ishikawa, M., Totoki, Y. and Okubo, K. (1994) Statistical analysis of human DNA sequences in the vicinity of poly(A) signal. Institute for New Generation Computer Technology. Technical Report TR-876.