Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette

RNA

Volumn 3, Issue 5, 1997, Pages 453-463

  Gerber, André ^a   O'Connell, Mary A ^a   Keller, Walter ^a  

^a UNIVERSITY OF BASEL   (Switzerland)

Author keywords

alternative splicing; double stranded RNA specific adenosine deaminase; GluR B; Pichia pastoris; RNA editinga

Indexed keywords

DEAMINASE; EDITASE 1; GLUTAMATE RECEPTOR; MESSENGER RNA PRECURSOR; UNCLASSIFIED DRUG;

ALTERNATIVE RNA SPLICING; ARTICLE; CARBOXY TERMINAL SEQUENCE; ENZYME SPECIFICITY; ENZYME STRUCTURE; MOLECULAR CLONING; PRIORITY JOURNAL; RNA EDITING; STRUCTURE ACTIVITY RELATION;

ADENOSINE DEAMINASE; ALTERNATIVE SPLICING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BRAIN; CLONING, MOLECULAR; EXONS; HELA CELLS; HUMANS; INTRONS; ISOENZYMES; KINETICS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; ORGAN SPECIFICITY; PICHIA; POLYMERASE CHAIN REACTION; RATS; RECEPTORS, GLUTAMATE; RECOMBINANT PROTEINS; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA EDITING; RNA, DOUBLE-STRANDED; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION, GENETIC;

EID: 0030926228     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (50)

1. Aebi M. Hornig H. Weissmann C. 1987. 5′ Cleaavge site in eukaryotic pre-mRNA splicing is determined by the overall 5′ splice region, not by the conserved 5′ GU. Cell 50:238-246.
2. Ahearn JM, Bartolomei MS, West ML, Cisek MJ, Corden JL. 1987. Cloning and sequence analysis of the mouse genomic locus encoding ihe largest subunit of RNA polymerase II. J Biol Chem 262:10695-10305.
3. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
4. Bradford MM. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248-254.
5. Brusa R, Zimmermann F, Koh DS, Feldmeyer D, Gass P, Seeburg PH, Sprengel R. 1995. Early-onset epilepsy and postnatal lethality associated with editing-deficient GluR-B allele in mice. Science 270:1677-1680.
6. Caras IW, Davitz MA, Rhee L, Weddell G, Martin DW. 1987. Cloning of decay-accelerating factor suggests novel use of splicing to generate two proteins. Nature (Lond) 325:545-548.
7. 35S] dATP. In: Griffin HG, Griffin AM, eds. DNA sequencing protocols. Totowa, New Jersey: Humana Press Inc. pp 191-197.
8. Cheng JF, Boyartchuk V, Zhu Y. 1994. Isolation and mapping of human chromosome 21 cDNA: Progress in constructing a chromosome 21 expression map. Genomics 23:75-84.
9. Dabiri GA, Lai F, Drakas RA, Nishikura K. 1996. Editing of the GluR-B ion channel RNA in vitro by recombinant double-stranded RNA adenosine deaminase. EMBO J 15:34-45.
10. Deininger PL, Batzer MA, Hutchison CA, Edgell MH. 1992. Master genes in mammalian repetitive DNA amplification. Trends Genet 8:307-311.
11. Devereux J,. Haeberli P. Smithies O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395.
12. Dingwall C Laskey RA. 1991. Nuclear Intron sequence directs sensus? Trends Biochim Sci USA 91:10270-10274.
13. Egebjerg J, Kukekov V, Heinemann SF, 1994, Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence. Proc Natl Acad Sci USA 91:10270-10274.
14. Herb A, Higuchi M, Sprengel R, Seeburg PH. 1996. Q/R site editing in kainate receptor GluR5 and GluR6 pre-mRNAs requires distant intronic sequences. Proc Natl Acad Sci USA 93:1875-1880.
15. Higuchi M, Single FN, Kohler M, Sommer B. Sprengel R, Seeburg PH. 1993 RNA editing of AMPA receptor subunit GluR-B: A base-paired intron-exon structure determines position and efficiency. Cell 75:1361-1370.
16. Hough RF, Bass BL. 1994. Purification of the Xenopus laevis dsRNA adenosine deaminase. J Biol Chem 269:9933-9939.
17. Hurst SR, Hough RF, Aruscavage PJ, Bass BL. 1995. Deamination of mammalian glutamate receptor RNA by Xenopus dsRNA adenosine deaminase: Similarities to in vivo. RNA 1:1051-1060.
18. Innerarity TL, Borén J, Yamanaka S, Olofsson SO, 1996. Biosynthesis of apolipoprotein B48-containing lipoproteins. J Biol Chem 271: 2353-2356.
19. Jackson IJ 1991. A reappraisal of non-consensus mRNA splice sites. Nucleic Acids Res 19:3795-3798.
20. Jurka J, Smith T. 1988. A fundamental division in the Alu family of repeated sequences. Proc Natl Acad Sci USA 85:4775-4778.
21. Kim U, Gamer TL, Sanford T, Speicher D, Murray JM, Nishikura K. 1994a. Purification and characterization of double-stranded RNA adenosine deaminase from bovine nuclear extracts. J Biol Chem 269:13480-13489.
22. Kim U, Wang Y, Stanford T, Zeng Y, Nishikura K. 1994b. Molecular cloning of cDNAs for double-stranded RNA adenosine deaminase, a candidate enzyme for nuclear RNA editing. Proc Natl Acad Sci USA 91:11457-11461.
23. Labuda D, Striker G. 1989. Sequence conservation in Alu evolution. Nucleic Acids Res 17:2477-2491.
24. Laemmli UK. 1970. Cleavage of structural proteins during the assembly of the head of the bacteriophage T4. Nature (Lond) 227:680-685.
25. Lai F, Drakas R, Nishikura K. 1995. Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts. J Biol Chem 270:17098-17105.
26. 1 subunit with a varient cytoplasmic domain. J Biol Chem 267:7116-7120.
27. Lorneli H, Mosbacher J, Melcher T, Hoger T, Geiger JR, Kruner T, Monyer H, Higuchi M, Bach A, Seeburg PH. 1994. Control of Kinetic properties of AMPA receptor channels by nuclear RNA editing. Science 266:1709-1713.
28. Mass S, Melcher T, Herb A, Seeburg PH. Keller W, Krause S, Higuchi M, O'Connell MA. 1996. Structural requirments for RNA editing in glutamate receptor pre-mRNA by recombinant double-stranded RNA adenosine deaminase. J Biol Chem 271:12221-12226.
29. Makalowski W, Mitchell GA, Labuda M. 1494. Alu sequences in the coding region of mRNA: A source of protein variability. Trends Genet 10:188-193.
30. Margalit H, Nadir E, Ben-Sasson SA. 1994. A complete Alu element within the coding sequence of a central gene. Cell 78:173-174.
31. Melcher T, Maas S, Herb A, Sprengel R, Higuchi M, Seeburg PH. 1996a. RED2, a brain-specific member of the RNA-specific adenosine deaminase fasmily. J Biol Chem 271:31795-31798.
32. Melcher T, Mass S, Herb A, Sprengel R, Seeburg PH, Higuchi M. 1996b. A mammalian RNA editing enzyme. Nature (Lond) 379:460-464.
33. Melcher T, Maas S, Higuchi M, Keller W, Seeburg PH. 1995. Editing of AMPA receptor GluR-B pre-mRNA in vitro reveals site-selective adenosine to inosine conversion. J Biol Chem 270:8566-8570.
34. Nakai K, Sakamoto H. 1994. Construction of a novel database containing aberrant splicing mutations of mammalian genes. Gene 141:171-177.
35. O'Connell MA, Gerber A, Keller W. 1997. Purification of human double-stranded RNA-specific editase 1(hRED1) involved in editing of brain glutamate receptor B pre-mRNA. J Biol Chem 272:473-478.
36. O'Connell MA, Keller W. 1994. Purification and properties of double-stranded RNA-Specific adenosine deaminase from calf thymus. Proc Natl Acad Sci USA 91:10596-10600.
37. O'Cornell MA, Krause S, Higuchi M, Hsuan JJ, Totty NF, Jenny A, Keller W. 1995. Cloning of cDNAs encoding mammalian double-stranded RNA-specific adenosine deaminase. Mol Cell Biol 15: 1389-1397.
38. Patterson JB, Samuel CE. 1995. Expression and regulation by interferon of a double-stranded-RNA-specific adenosine deaminase from human cells: Evidence for two forms of the deaminase. Mol Cell Biol 15:5376-5388.
39. Post TW, Arce MA, Liszewski MK, Thompson ES, Atkinson JP, Lublin DM. 1990. Structure of the gene for human complement protein decay accelerating factor. J Immmunol 144:740-744.
40. Rueter SM, Burns CM, Coode SA, Mookherjee P, Emeson RB. 1995. Glutamate receptor RNA editing in vitro by enzymatic conversion of adenosine to inosine. Science 267:1491-1494.
41. Sambrook S, Fritsch EF, Maniatis T. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
42. Schmid C, Mararia R. 1992. Transcriptional regulation and transpositional selection of active SINES sequences. Curr Opin Genet Dev 2:874-882.
43. Scott J. 1995. A Place in the world for RNA editing. Cell 81:833-836.
44. Seeburg PH. 1996. The role of RNA editing in controlling glutamate receptor channel properties. J Neurochem 66:1-5.
45. Simpson L, Emeson RB. 1996. RNA editing. Annu Rev Neurosci 19:27-52.
46. Sommer B, Köhler M, Sprengel R, Seeburg PH. 1991. RNA editing in brain controls a determinant of ion flow in glutamate-gated channels. Cell 67:11-19.
47. St. Johnston D, Brown NH, Gall JG, Jantsch M. 1992. A conserved double-stranded RNA-binding doamin. Proc Natl Acad Sci USA 89:10979-10983.
48. Teng B, Burant CF, Davidson NO. 1993. Molecular cloning of an apolipoprotein B messenger RNA editing protein. Science 260: 1816-1819.
49. Ullu E, Tschudi C. 1984. Alu sequences are processed 7 SL RNA genes. Nature (Lond) 312:171-172.
50. Yang JH, Sklar P, Axel R, MAniatis T. 1995. Editing of glutamate receptor subunit B pre-mRNA in vitro by site-specific deamination of adenosine. Nature (Lond) 374:77-81.