An experimental approach to evaluating the role of backbone interactions in proteins using unnatural amino acid mutagenesis

Biochemistry

Volumn 36, Issue 38, 1997, Pages 11314-11322

  Koh, John T ^a,b   Cornish, Virginia W ^a,c   Schultz, Peter G ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF DELAWARE   (United States)

^c MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; AMINO ACID; ISOLEUCINE; LEUCINE; LYSINE; LYSOZYME; SERINE;

AMINO ACID SUBSTITUTION; ARTICLE; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN DENATURATION; PROTEIN PROTEIN INTERACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; THERMODYNAMICS;

ACYLATION; AMIDES; AMINO ACIDS; BACTERIOPHAGE T4; ESTERS; EVALUATION STUDIES; HYDROGEN BONDING; HYDROXY ACIDS; LEUCINE; MODELS, CHEMICAL; MODELS, MOLECULAR; MURAMIDASE; MUTAGENESIS; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, SECONDARY; RNA, TRANSFER; SERINE; THERMODYNAMICS;

EID: 0030922940     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9707685     Document Type: Article

References (61)

1. Alber, T., Dao-pin, S., WIlson, K., Wozniak, J. A., Cook, S. P., & Matthews, B. W. (1987) Nature 330, 41-46.
2. Arnett, E. M., Mitchell, E. J., & Murty, T. S. S. R. (1974) J. Am. Chem. Soc. 96, 3875-3891.
3. Becktel, W. J., & Baase, W. A. (1987) Biopolymers 26, 619-623.
4. Blaber, M., Zhang, X.-J., Lindstrom, J. D., Pepiot, S. D., Baase, W. A., & Matthews, B. W. (1994) J. Mol. Biol. 235, 600-624.
5. Blom, C. E., & Gunthard, H. H. (1981) Chem. Phys. Lett. 84, 267.
6. Bugg, T. D. H., Wright, G. D., Dutka-Malen, S., Arthur, M., Courvalin, P., & Walsh, C. T. (1991) Biochemistry 30, 10408-10415.
7. Chapman, E., Thorson, J. S., & Schultz, P. G. (1997) J. Am. Chem. Soc. (in press).
8. Chen, Y. W., Fersht, A. R., & Henrick, K. (1993) J. Mol. Biol. 234, 1158-1170.
9. Chladek, S., & Sprinzl, M. (1985) Angew. Chem., Int. Ed. Engl. 24, 371.
10. Cornish, V. W., Benson, D. R., Altenbach, C. A., Hideg, K., & Hubbel, W. L. (1994a) Proc. Natl. Acad. Sci. U.S.A. 91, 2910-2914.
11. Cornish, V. W., Kaplan, M. I., Veenstr, D. L., Kollman, P. A., & Schultz, P. G. (1994b) Biochemistry 33, 12022-12031.
12. Cornish, V. W., Mendel, D., & Schultz, P. G. (1995) Angew. Chem., Int. Ed. Engl. 34, 621-633.
13. Creighton, T. E. (1991) Curr. Biol. 1, 5-16.
14. Dill, K. A. (1990) Biochemistry 29, 7133-7155.
15. Doig, A. J., & Williams, D. H. (1992) J. Am. Chem. Soc. 114, 338-343.
16. Ellman, J., Mendel, D., Anthony-Cahill, S., Noren, C. J., & Schultz, P. G. (1991) Methods Enzymol. 202, 301-337.
17. Ellman, J. A., Mendel, D., & Schultz, P. G. (1992) Science 255, 197-255.
18. Fahrestock, S., Neumann, H.. Shashoua, V., & Rich, A. (1970) Biochemistry 9, 2477.
19. Fersht, A. R. (1988) Biochemistry 27, 1577-1580.
20. Groeger, C., Wenzel, H. R., & Tschesche, H. (1994) Int. J. Pept. Protein Res. 44, 166-172.
21. Hine, J. (1975) Structural Effects on Equilibria in Organic Chemistry, Wiley-Interscience, New York.
22. Honig, B., & Yang, A.-S. (1995) Adv. Protein Chem. 46, 27-58.
23. Ingwall, R. T., & Goodman, M. (1974) Macromolecules 7, 598-606.
24. Jackson, S. E. (1994) Biochemistry 33, 13880-13887.
25. Kauzmann, W. (1959) Adv. Protein Chem. 14, 1-63.
26. Khechinashvili, N. N. (1990) Biochim. Biophys. Acta 1040, 346-354.
27. Klotz, I. M., & Franzen, J. S. (1962) J. Am. Chem. Soc. 84, 3461-3466.
28. Kunkel, T. A., Roberts, J. D., & Zakour, R. A. (1987) Methods Enzymol. 154, 367-382.
29. Leo, A., Hansch, C., & Elkins, D. (1971) Chem. Rev. 71, 525-555.
30. Lu, W., Qasim, M. A., Laskowski, M., Jr., & Kent, S. B. H. (1997) Biochemistry 36, 673-679.
31. Makhatadze, G. I., & Privalov, P. L. (1995) Adv. Protein Chem. 47, 307-425.
32. Matthews, B. W. (1995) Adv. Protein Chem. 46, 249-278.
33. Mendel, D., Cornish, V. W., & Schultz, P. G. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 435-462.
34. Mohamadi, F., Richards, N. G. J., Guida, W. C., Liskamp, R., Lipton, M., Chang, G. C., Hendrickson, T., & Still, W. C. (1990) J. Comput. Chem. 11, 440-467.
35. Morgan, B. P., Scholtz, J. M., Ballinger, M. D., Zipkin, I. D., & Bartlett, P. A. (1991) J. Am. Chem. Soc. 113, 297-307.
36. Murphy, K. P., & Gill, S. J. (1991) J. Mol. Biol. 222, 699-709.
37. Murray, I., Derrick, J. P., White, A. J., Drabble, K., Wharton, C. W., & Shaw, W. V. (1994) Biochemistry 33, 9826-9830.
38. Nelson, M. A., & Gold, L. (1982) Mol. Gen. Genet. 188, 69.
39. Nicholson, H., Anderson, D. E., Dao-pin, S., & Matthews, B. W. (1991) Biochemistry 30, 9816-9828.
40. Pace, C. N., Shirley, B. A., McNutt, M., & Gajiwala, K. (1996) FASEB J. 10, 75-83.
41. Pauling, L., Corey, R. B., & Bransom, H. R. (1951) Proc. Natl. Acad. Sci. U.S.A. 37, 205.
42. Perry, L. J., & Wetzel, R. (1987) Protein Eng. 1, 101-105.
43. Privalov, P. L., & Gill, S. G. (1988) Adv. Protein Chem. 39, 191-234.
44. Robertson, S. A., Ellman, J. A., & Schultz, P. G. (1991) J. Am. Chem. Soc. 113, 2722-2729.
45. Sanger, F., Nicklen, S., & Caulson, A. R. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 5463-5467.
46. Scholtz, J. M., Marqusee, S., Baldwin, R. L., York, E. J., Stewart, J. M., Santoro, M., & Bolen, D. W. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 2854-2858.
47. Schreiber, G., & Fersht, A. R. (1995) J. Mol. Biol. 248, 478-486.
48. Serrano, L., Kellis, J. T., Cann, P., Matouschek, A., & Fersht, A. R. (1992) J. Mol. Biol. 224, 783-804.
49. Shirley, B. A., Stanssens, P., Hahn, U., & Pace, C. N. (1992) Biochemistry 31, 725-732.
50. Susi, H., Timasheff, S. N., & Ard, J. S. (1964) J. Biol. Chem. 239, 3051-3054.
51. Thorson, J. S., Chapman, E., & Schultz, P. G. (1995a) J. Am. Chem. Soc. 117, 9361-9362.
52. Thorson, J. S., Chapman, E., Murphy, E. C., & Schultz, P. G. (1995b) J. Am. Chem. Soc. 117, 1157-1158.
53. Tirado-Rives, J., Maxwell, D. S., & Jorgenson, W. L. (1993) J. Am. Chem. Soc. 115, 11590-11593.
54. Wells, J. A., & Powers, D. B. (1986) J. Biol. Chem. 193, 189-199.
55. Wiberg, K. B., & Laiding, K. (1987) J. Am. Chem. Soc. 109, 5935-5943.
56. Williams, D. H., Cox, J. P. L., Doig, A. J., Garlander, M., Gerhard, U., Kaye, P. T., Lal, A. R., Nicholls, I. A., Salter, C. J., & Mitchell, R. C. (1991) J. Am. Chem. Soc. 113, 7020-7030.
57. Winitz, M., Block-Frankenthal, L., Izumiya, N., Birnbaum, S. M., Baker, C. G., & Greenstein, J. P. (1956) J. Am. Chem. Soc. 78, 2423-2430.
58. Wolfenden, R. (1978) Biochemistry 17, 201-203.
59. Yang, A.-S., & Honig, B. (1995a) J. Mol. Biol. 252, 351-365.
60. Yang, A.-S., & Honig, B. (1995b) J. Mol. Biol. 252, 366-376.
61. Zhang, X. J., Baase, W. A., & Matthews, B. W. (1991) Biochemistry 32, 2012-2017.