Kinetic analysis of the endonuclease activity of phage λ terminase: Assembly of a catalytically competent nicking complex is rate-limiting

Biochemistry

Volumn 36, Issue 19, 1997, Pages 5777-5785

  Woods, Liping ^a   Terpening, Christopher ^a   Catalano, Carlos Enrique ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; DNA; ENDONUCLEASE;

ARTICLE; BACTERIOPHAGE; CONCENTRATION RESPONSE; DNA PROTEIN COMPLEX; ENZYME KINETICS; ENZYME PURIFICATION; ENZYME SUBSTRATE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; VIRUS ASSEMBLY; VIRUS CAPSID; VIRUS GENOME;

BACTERIAL PROTEINS; BACTERIOPHAGE LAMBDA; BINDING SITES; CATALYSIS; ENDODEOXYRIBONUCLEASES; ESCHERICHIA COLI; INTEGRATION HOST FACTORS; KINETICS; PSEUDOMONAS PHAGES; TERMINATOR REGIONS (GENETICS);

EID: 0030922718     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi963044m     Document Type: Article

References (45)

1. Becker, A., & Murialdo, H. (1990) J. Bacteriol. 172, 2819-2824.
2. Becker, A., Marko, M., & Gold, M. (1977) Virology 78, 291-305.
3. Black, L. W. (1988) DNA Packaging in dsDNA Bacteriophages, in The Bacteriophages (Calendar, R., Ed.) pp 321-373, Plenum Publishing Corp., New York.
4. Black, L. W. (1989) Annu. Rev. Microbiol. 43, 267-292.
5. Cai, A.-H., Hwang, Y., Cue, D., Catalano, C., & Feiss, M. (1997) J. Bacteriol. 179 (8), 2479-2485.
6. Carey, J. (1991) Methods Enzymol. 208, 103-118.
7. Casjens, S. R. (1985) An Introduction to Virus Structure and Assembly, in Virus Structure and Assembly (Casjens, S. R., Ed.) pp 1-28, Jones and Bartlett Publishers, Inc., Boston, MA.
8. Catalano, C. E., & Tomka, M. A. (1995) Biochemistry 34, 10036-10042.
9. Catalano, C. E., Cue, D., & Feiss, M. (1995) Mol. Microbiol. 16, 1075-1086.
10. Cue, D., & Feiss, M. (1992a) J. Mol. Biol. 228, 58-71.
11. Cue, D., & Feiss, M. (1992b) J. Mol. Biol. 228, 72-87.
12. Cue, D., & Feiss, M. (1993a) J. Mol. Biol. 234, 594-609.
13. Cue, D., & Feiss, M. (1993b) Proc. Natl. Acad. Sci. U.S.A. 90, 9290-9294.
14. Davidson, A. R., & Gold, M. (1992) Virology 189, 21-30.
15. Dunn, M. J. (1994) Determination of Total Protein Concentration, in Protein Purification Methods. A Practical Approach (Harris, E. L. V., & Angal, S., Eds.) pp 10-17, IRL Press, New York.
16. Earnshaw, W. C., & Casjens, S. R. (1980) Cell 21, 319-331.
17. Feiss, M. (1986) Trends Genet. 2, 100-104.
18. Feiss, M., & Becker, A. (1983) DNA Packaging and Cutting, in Lambda II (Hendrix, R. W., Roberts, J. W., Stahl, F. W., & Weisberg, R. A., Eds.) pp 305-330, Cold Spring Harbor Laboratory Press, Plainview, NY.
19. Feiss, M., & Widner, W. (1982) Proc. Acad. Acad. Sci. U.S.A. 79, 3498-3502.
20. Feiss, M., Fisher, R. A., Siegele, D. A., Nichols, B. P., & Donelson, J. E. (1979) Virology 92, 56-67.
21. Feiss, M., Fisher, R. A., Siegele, D. A., & Widner, W. (1981) Bacteriophage λ and 21 Packaging Specificities, in Bacteriophage Assembly (DuBow, M., Ed.) pp 213-222, Alan R. Liss, Inc., New York.
22. Feiss, M., Widner, W., Miller, G., Johnson, G., & Christiansen, S. (1983) Gene 24, 207-218.
23. Gold, M., & Parris, W. (1986) Nucleic Acids Res. 14, 9797-9809.
24. Higgins, R., & Becker, A. (1994) EMBO J. 13, 6152-6161.
25. Higgins, R. R., Lucko, H. J., & Becker, A. (1988) Cell 54, 765-775.
26. Hohn, B. (1975) J. Mol. Biol. 98, 93-106.
27. Hwang, Y., & Feiss, M. (1996) J. Mol. Biol. 261, 524-535.
28. Hwang, Y., Catalano, C. E., & Feiss, M. (1995) Biochemistry 35, 2796-2803.
29. Kobayashi, L, Stahl, M. M., & Stahl, F. W. (1984) Cold Spring Harbor Symp. Quant. Biol. 49, 497-506.
30. Kosturko, L. D., Daub, E., & Murialdo, H. (1989) Nucleic Acids Res. 17, 317-333.
31. Maniatis, T., Firtsch, E. F., & Sambrook, J. (1982) Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, Plainview, NY.
32. Miller, G., & Feiss, M. (1985) J. Mol. Biol. 183, 246-249.
33. Murialdo, H. (1991) Annu. Rev. Biochem. 60, 125-153.
34. Nash, H. A., Robertson, C. A., Flamm, E., Weisberg, R. A., & Miller, H. I. (1987) J. Bacteriol. 169, 4124-4127.
35. Parris, W., Rubinchik, S., Yang, Y.-C., & Gold, M. (1994) J. Biol. Chem. 269, 13564-13574.
36. Roizman, B., & Sears, A. E. (1991) Fundamental Virology, in Fundamental Virologv (Fields, B. N., Knipe, D. M., & Chanock, R. M., Eds.) pp 863-865, Raven Press, New York.
37. Rubinchik, S., Parris, W., & Gold, M. (1994a) J. Biol. Chem. 269, 13586-13593.
38. Rubinchik, S., Parris, W., & Gold, M. (1994b) J. Biol. Chem. 269, 13575-13585.
39. Shinder, G., & Gold, M. (1988) J. Virol. 62, 387-392.
40. Shinder, G., & Gold, M. (1989) Nucleic Acids Res. 17, 2005-2022.
41. Tomka, M. A., & Catalano, C. E. (1993a) Biochemistry 32, 11992-11997.
42. Tomka, M. A., & Catalano, C. E. (1993b) J. Biol. Chem. 268, 3056-3065.
43. Xin, W., & Feiss, M. (1988) Nucleic Acids Res. 16, 2015-2030.
44. Xin, W., & Feiss, M. (1993) J. Mol. Biol. 230, 492-504.
45. Yang, Q., Hanagan, A., & Catalano, C. E. (1997) Biochemistry 36, 2744-2752.