Human nucleotide excision repair protein xpa: 1H NMR and CD Solution Studies of a Synthetic Peptide Fragment Corresponding to the Zinc-Binding Domain (101–141)

Journal of Biomolecular Structure and Dynamics

Volumn 14, Issue 6, 1997, Pages 677-690

  Buchko, Garry W ^a   Kennedy, Michael A ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; ISOLEUCINE; SYNTHETIC PEPTIDE; TRANSCRIPTION FACTOR GATA 1; ZINC; ZINC CHLORIDE;

ARTICLE; CIRCULAR DICHROISM; EXCISION REPAIR; HUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; BINDING SITES; CIRCULAR DICHROISM; DNA REPAIR; DNA-BINDING PROTEINS; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MASS SPECTROMETRY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, SECONDARY; PROTONS; XERODERMA PIGMENTOSUM GROUP A PROTEIN; ZINC;

EID: 0030919097     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1997.10508171     Document Type: Article

References (57)

1. Huang, J-C., Hsu, D. S., Kazantzev, A., and Sancar, A., 1994. Proc. Natl. Acad. Sci. USA, 91:12213–13317.
2. Tanaka, K., and Wood, R. D., 1994. Trends Biochem. Sci., 19:83–86.
3. Naegeli, H., 1995. FASEB J., 9:1043–1050.
4. Sanear, A., 1995. J. Biol. Chem., 270:15915–15918.
5. Friedberg, E. C., Walker, G. C., and Siede, W., 1995. DNA Repair and Mutagenesis. 283–365. Wash., D.C.:American Society for Microbiology.
6. Gunz, D., Hess, M. T., and Naegeli, H., 1995. J. Biol. Chem., 271:25089–25098.
7. Huang, J-C., Svoboda, D. L., Reardon, J. T., and Sanear, A., 1992. Proc. Natl. Acad. Sci. USA, 89:3663–3668.
8. Coverley, D., Kenny, M., Munn, M., Rupp, W. D., Lane, D. P., and Wood, R. D., 1991. Nature, 349:538–541.
9. Satoh, M. S., Jones, C. J., Wood, R. D., and Lindahl, T., 1993. Proc. Natl. Acad. Sci. USA, 90:6335–6339.
10. Cleaver, J. E., and Kraemer, K. H., 1989. The Metabolic Basis of Inherited Disease Edited by:Scriver, C. R., Beaudet, A. L., Sly, W. S., and Valle, D., Vol. 2, 2949–2971. New York:McGraw-Hill.
11. Kraemer, K. H., Myung, M. L., and Scotto, M. S.J., 1987. Arch. Dermatol., 123:241–250.
12. Robbins, J. H., 1988. J. Am. Med. Ass., 260:384–388.
13. Friedberg, E. C., and Henning, K. A., 1993. Mutation Res., 289:47–53.
14. Tanaka, K., Miura, N., Satokata, I., Miyamoto, I., Yoshida, M. C., Satoh, Y., Kondo, S., Yasui, A., Okayama, H., and Okada, Y., 1990. Nature, 348:73–76.
15. Robins, P., Jones, C. J., Biggerstaff, M., Lindahl, T., and Wood, R. D., 1991. EM BO J., 10:3913–3921.
16. Jones, C. J., and Wood, R. D., 1993. Biochemistry, 32:12096–12104.
17. Asahina, H., Kuraoka, I., Shirakawa, M., Morita, E. H., Miura, N., Miyamoto, I., Ohtsuka, E., Okada, Y., and Tanaka, K., 1994. Mutation Res., 315:229–2378.
18. He, Z., Henricksen, L. A., Wold, M. S., and Ingles, C. J., 1995. Nature, 374:566–569.
19. Kuraoka, I., Morita, E. H., Saijo, M., Matsuda, T., Morikawa, K., Shirakawa, M., and Tanaka, K., 1996. Mutation Res., 362:87–95.
20. Pabo, O., and Sauer, R. T., 1992. Annu. Rev. Biochem., 61:1053–1095.
21. Berg, J. M., and Shi, Y., 1996. Science, 271:1081–1085.
22. Omichinski, J. G., Clore, G. M., Schaad, O., Felsenfeld, G., Trainor, C., Appella, E., Stahl, S. J., and Gronenborn, A. M., 1993. Science, 261:438–446.
23. Omichinski, J. G., Trainor, C., Evans, T., Gronenborn, A. M., Clore, G. M., and Felsenfeld, G., 1993. Proc. Natl. Acad. Sci. USA, 90:1676–1680.
24. Clark-Lewis, I., Aebersold, R. A., Ziltner, H., Schräder, J. W., Hood, L. A., and Kent, S. B.H., 1986. Science, 231:134–139.
25. Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R., 1979. J. Chem. Phys., 71:4546–4553.
26. Braunschweiler, L., and Ernst, R. R., 1983. J. Magn. Reson., 53:521–528.
27. Bax, A., and Davis, D. G., 1985. J. Magn. Reson., 65:355–360.
28. Rance, M., Sørensen, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R., and Wiithrich, K., 1983. Biochem. Biophys. Res. Commun., 117:479–485.
29. Piotto, M., Saudek, V., and Sklenár, V., 1992. J. Biomol. NMR, 2:661–665.
30. Sklenár, V., Piotto, M., Leppik, R., and Saudek, V., 1993. J. Magn. Reson., A102:241–245.
31. Bax, A., and Davis, D. G., 1985. J. Magn. Reson., 63:207–213.
32. Woody, R. W., 1995. Methods Enzymol., 246:34–71.
33. Holzwarth, G. M., and Doty, P., 1965. J. Am. Chem. Soc., 87:218–228.
34. Perczel, A., Park, K., and Fasman, G. D., 1992. Anal. Biochem., 203:83–93.
35. Hennessey, J. P., Jr. and Johnson, W. C., Jr. 1982. Anal. Biochem., 125:177–188.
36. Manning, M. C., 1989. J. Pharm. Biomed. Anal., 7:1103–1119.
37. Sarver, R. W., and Krueger, K. C., 1991. Anal. Biochem., 194:89–100.
38. Bruch, M. D., Dhingra, M. M., and Gierasch, L. M., 1991. Proteins:Struct. Funct. Genet., 10:130–139.
39. Wishart, D. S., Sykes, B. D., and Richards, F. M., 1991. J. Mol. Biol., 222:311–333.
40. Wüthrich, K., 1986. NMR of Proteins and Nucleic Acids New York:Wiley.
41. Párraga, G., Horvath, S., Hood, L., Young, E. T., and Klevit, R. E., 1990. Proc. Natl. Acad. Sci., USA, 87:137–141.
42. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., III and Skelton, N. J., 1996. Protein NMR Spectroscopy, Principles and Practice. San Diego:Academic Press Inc.
43. Borden, K. L.B., Lally, J. M., Martin, S. R., O'Reilly, N. J., Etkin, L. D., and Freemont, P. S., 1995. EMBO J., 14:5947–5956.
44. Richardz, R., Sehr, P., Wagner, G., and Wüthrich, K., 1979. J. Mol. Biol., 130:19–30.
45. Nelson, J. W., and Kallenback, N. R., 1986. Protein Struct. Fund. Gen., 1:211–217.
46. Zhang, Y-P, Lewis, R. N.A.H., Henry, G. D., Sykes, B. D., Hodges, R. S., and McElhaney, R. N., 1986. Biochemistry, 34:2348–2361.
47. Albert, J. S., and Hamilton, A. D., 1995. Biochemistry, 34:984–990.
48. Brandts, J. F., Halvorson, H. R., and Brennan, M., 1975. Biochemistry, 14:4953–4963.
49. Kelly, R. F., and Richards, F. M., 1987. Biochemistry, 26:6765–6774.
50. Creighton, T. E., 1993. Proteins:Structure and Molecular Properties 312–313. New York:W.H. Freeman and Company.
51. Bundi, A., and Wüthrich, K., 1979. Biopolymers, 18:285–298.
52. Rizo, J., Blanco, F. J., Kobe, B., Bruch, M. D., and Gierasch, L. M., 1993. Biochemistry, 32:4881–4894.
53. Dyson, H. J., Ranee, M., Houghten, R. A., Wright, P. E., and Lemer, R. A., 1988. J. Mol. Biol., 201:201–217.
54. Dyson, H. J., and Wright, P. E., 1991. Annu. Rev. Biophys. Biophys. Chem., 20:519–538.
55. Buchko, G. W., Rozek, A., Zhong, Q., and Cushley, R. J., 1995. Peptide Res., 8:86–94.
56. Travers, A., 1993. DNA-Protein Interactions. London:Chapman & Hall.
57. Li, L., Lu, X., Peterson, C. A., and Legerski, R. J., 1995. Mol. Cell. Biol., 15:5396–5402.