Degenerate and specific PCR assays for the detection of bovine leukaemia virus and primate T cell leukaemia/lymphoma virus pol DNA and RNA: Phylogenetic comparisons of amplified sequences from cattle and primates from around the world

Journal of General Virology

Volumn 78, Issue 6, 1997, Pages 1389-1398

  Dube, Syamalima ^a   Bachman, Suzanne ^a   Spicer, Tim ^a   Love, Jayne ^a   Choi, David ^a   Esteban, Eduardo ^b   Ferrer, Jorge F ^c   Poiesz, Bernard J ^a  

^a State University of New York Upstate Medical University: College of Medicine   (United States)

^b Facultad de Ciencias Veterinarias   (Argentina)

^c UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BOVINE LEUKEMIA VIRUS; CATTLE; GENE SEQUENCE; HUMAN T CELL LEUKEMIA VIRUS 1; HUMAN T CELL LEUKEMIA VIRUS 2; LEUKEMIA VIRUS; MOLECULAR CLONING; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIMATE; PRIORITY JOURNAL; VIRUS DETECTION;

EID: 0030916942     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/0022-1317-78-6-1389     Document Type: Article

References (41)

1. Abbott, L. Z., Spicer, T., Bryz-Gornia, V., Kwok, S., Sninsky, J. & Poiesz, B. J. (1994). Design and use of signature primers to detect carryover of amplified material. Journal of Virological Methods 46, 51-59.
2. Abt, D. A., Marshak, R. R., Ferrer, J., Piper, C. E.& Bhatt,D. M. (1976). Studies on the development of persistent lymphocytosis and infection with the bovine C-type leukemia virus (BLV) in cattle. Veterinary Microbiology 1, 287-300.
3. Brenner, J., Van Hamm, M., Savir, D. & Trainin, Z. (1989). The implication of BLV infection in the productivity, reproductive capacity and survival rate of a dairy cow. Veterinary Immunology and Immunopathology 22, 299-305.
4. Burny, A., Cleuter, Y., Kettmann, R., Mammeriek, M., Marbaix, G., Portetelle, D., Van den Broeke, A., Willems, L. & Thomas, R. (1990). Bovine leukemia: facts and hypotheses derived from the study of an infectious cancer. In Retrovirus Biology and Human Disease, pp. 9-32. Edited by R. Gallo & F. Wong-Staal. New York: Marcel Dekker.
5. Clark, S. (1991). Using MALIGNED to display multiple sequence alignments emphasizing regions of conservation and divergence. A Manual for Sequence Alignment, pp. 1-21. Ontario: Ontario Cancer Institute.
6. Coulston, J., Naif, H., Brandon, A., Kumar, S., Khan, S., David, R. C. & Lavin, M. F. (1990). Molecular cloning and sequencing of an Australian isolate of proviral bovine leukaemia virus DNA: comparison with other isolates. Journal of General Virology 71, 1737-1746.
7. Deschamps, J., Kettmann, R. & Burny, A. (1981). Experiments with clonal complete tumor-derived bovine leukemia virus information prove that the virus is totally exogenous to its target species. Journal of Virology 40, 605-609.
8. Devereux, J., Haeberli, P. & Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Research 12, 387-395.
9. Doolittle, R. F., Feng, D. F., Johnson, M. S. & McClure, M. A. (1987). Origins and evolutionary relationships of retroviruses. Quarterly Review of Biology 64, 1-30.
10. Dube, D. K., Sherman, M. P., Saksena, N. K., Bryz-Gornia, V., Mendelson, J., Love, J., Arnold, L. B., Spicer, T., Dube, S., Glaser, J. B., Williams, A. E., Nishimura, M., Jacobson, S., Ferrer, J. F., Del Pino, N., Quiruelas, S. & Poiesz, B. J. (1993). Genetic heterogeneity in human T-cell leukemia/lymphoma virus type II. Journal of Virology 67, 1175-1184.
11. Dube, D. K., Dube, S., Erensoy, S., Jones, B., Bryz-Gornia, V., Spicer, T., Love, J., Saksena, N., Lechat, M. F., Shrager, D. I., Dosik, H., Glaser, J., Lewis, W., Blattner, W., Montagna, R., Blumberg, B. S. & Poiesz, B. J. (1994). Serological and nucleic acid analyses for HIV and HTLV infection on archival human plasma samples from Zaire. Virology 202, 379-389.
12. Dube, S., Spicer, T., Bryz-Gornia, V., Jones, B., Dean, T., Love, J., Ferrer, J., Harrington, W., Glaser, J., Dube, D. K., Williams, A., Dosik, H., Siegal, F. & Poiesz, B. J. (1995). A rapid and sensitive method of identification of HTLV-II subtypes. Journal of Medical Virology 45, 1-9.
13. Oyster, L. M., Abbott, L., Bryz-Gornia, V., Poiesz, B. J. & Papsidero, L. D. (1994). Microplate-based DNA hybridization assays for detection of human retroviral gene sequences. Journal of Clinical Microbiology 32, 547-550.
14. + lymphocytosis in a patient doubly infected with HTLV-I and HIV-I: a clinical and molecular analysis. American Journal of Hematology 30, 128-139.
15. Ehrlich, G. D., Glaser, J. B., Abbott, M. A., Slamo, D., Keith, D., Sliwkowski, M., Brandis, J., Keitelman, E., Teamoto, Y., Papsidero, L., Simpkins, H., Sninsky, J. J. & Poiesz, B. J. (1989b). Detection of anti-HTLV-I tax antibodies in HTLV-I enzyme-linked immunoabsorbent assay-negative individuals. Blood 74, 1066-1072.
16. Ehrlich, G. D., Glaser, J. B., Lavigne, K., Quan, D., Mildvan, D., Sninsky, J., Kwok, S., Papsidero, L. & Poiesz, B. (1989c). Prevalence of human T-cell leukemia/lymphoma virus type II infection among high risk individuals. Type-specific identification of HTLV by polymerase chain reaction. Blood 74, 1658-1664.
17. Ehrlich, G. D., Andrews, J., Sherman, M. P., Greenberg, S. J. & Poiesz, B. J. (1992). DNA sequence analysis of the gene encoding the HTLV-I p21e transmembrane protein reveals inter-and intra-isolate genetic heterogeneity. Virology 186, 619-627.
18. Faulkner, D. B. & Jurka, J. (1988). Multiple aligned sequence editor (MASE). Trends in Biochemical Sciences 13, 321-322.
19. Felsenstein, J. (1989). PHYLIP: phylogeny inference package, version 3.2. Cladistics 5, 164-166.
20. Ferrer, J. F. (1980). Bovine lymphosarcoma. Advances in Veterinary Science and Comparative Medicine 24, 1-68.
21. Ferrer, J. F., Abt, D. A., Bhatt, D. M. & Marshak, R. R. (1974). Studies on the relationship between infection with bovine C-type virus, leukemia and persistent lymphocytosis in cattle. Cancer Research 34, 893-900.
22. Ferrer, J. F., Esteban, E. F., Dube, S., Basombrio, M. A., Segovia, A., Peralta-Ramos, M., Dube, D. K., Sayre, K., Aguayo, N., Hengst, J. & Poiesz, B. J. (1996). Molecular and Serological evidence for vertical and horizontal transmission of the human T-lymphotropic virus type IIB in Argentinian and Paraguayan Indians. Journal of Infectious Diseases 174, 944-953.
23. Gupta, P. & Ferrer, J. F. (1981). Comparison of various Serological and direct methods for the diagnosis of BLV infection in cattle. International Journal of Cancer 20, 179-184.
24. Johnson, M. S., McClure, M. A., Feng, D. F., Gary, J. & Doolittle, R. F. (1986). Computer analysis of retroviral pol genes: assignment of enzymatic functions to specific sequences and homologies with nonviral enzymes. Proceedings of the National Academy of Sciences, USA 83, 7648-7652.
25. Kalyanaraman, V. S., Sarngadaharan, M. S., Miyoshi, I., Blayney, D., Golde, D. & Gallo, R. C. (1982). A new subtype of human T-cell leukemia virus. Science 218, 571-573.
26. Kunkel, T. A., Roberts, J. D. & Zakoup, R. A. (1987). Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods in Enzymology 154, 367-387.
27. Kwok, S., Ehrlich, G., Poiesz, B. J., Kalish, R. & Sninsky, J. (1988). Enzymatic amplification of HTLV-I viral sequences from peripheral blood mononuclear cells and infected tissues. Blood 72, 1117-1123.
28. Longo, M. C., Beringer, M. S. & Hartley, J. L. (1990). Use of uracil DNA glycosylase to control carryover contamination in polymerase chain reaction. Gene 93, 125-128.
29. McDonald, H. C. & Ferrer, J. F. (1976). Detection, quantitation and characterization of the major internal virion antigen of the bovine leukemia virus by radioimmunoassay. Journal of the National Cancer Institute 57, 875-882.
30. Mamoun, R. Z., Morisson, M., Rebeyrotte, N., Busetta, B., Cuvez, D., Kettmann, R., Hospital, M. & Guillemain, B. (1990). Sequence variability of bovine leukemia virus env gene and its relevance to the structure and antigenicity of the glycoproteins. Journal of Virology 64, 4180-4188.
31. Poiesz, B. J. (1995). Etiology of acute leukemia: molecular genetics and viral oncology. In Neoplastic Diseases of the Blood, 3rd edn, pp. 159-175. Edited by P. H. Wiernik, G. P. Canellos, J. P. Dutcher & R. A. Kyle. New York: Churchill Livingstone.
32. Sagata, N., Yasunaga, T., Tsuzuku-Kawamura, J., Ohishi, K., Ogawa, Y. & Ikawa, Y. (1985). Complete nucleotide sequence of the genome of bovine leukemia virus, its evolutionary relationship to other retroviruses. Proceedings of the National Academy of Sciences, USA 82, 677-681.
33. Saksena, N. K., Herve, V., Durand, J. P., LeGuenno, B., Diop, O. M., Digoutte, J. P., Mathiot, C., Muller, M. C., Love, J. L., Dube, S., Sherman, M. P., Benz, P. M., Erensoy, S., Galot-Luong, A., Galat, G., Paul, B., Dube, O.K., Barre-Sinoussi, F. & Poiesz, B. J. (1994). Seroepidemiology, molecular and phylogenetic analyses of simian T-cell leukemia viruses (STLV-I) from various naturally infected monkey species from Central and Western Africa. Virology 198, 287-310.
34. Sanger, F., Nicklin, S. & Coulson, A. R. (1977). DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences, USA 74, 5463-5466.
35. Sharkey, D. J., Scalice, E. R., Chvistry, K. G., Jr, Atwood, S. M. & Daiss, S. M. (1994). Antibodies as thermolabile switches: high temperature triggering for the polymerase chain reaction. Bio/Technology 12, 506-509.
36. Sherman, M. P., Ehrlich, G. D., Ferrer, J. F., Sninsky, J., Zandomeni, R., Dock, N. L. & Poiesz, B. J. (1992a). Amplification and analysis of specific DNA and RNA sequences of bovine leukemia virus from infected cows by polymerase chain reaction. Journal of Clinical Microbiology 30, 185-191.
37. Sherman, M. P., Saksena, N. K., Dube, D. K., Yanagihara, R. & Poiesz, B. J. (1992b). Evolutionary insights on the origin of human T-cell lymphoma/leukemia virus type I (HTLV-I) derived from sequence analysis of a new HTLV-I variant from Papua New Guinea. Journal of Virology 66, 2556-2563.
38. Sherman, M. P., Dube, S., Spicer, T. P., Kane, T. D., Love, J. G., Saksena, N. K., lannone, R., Gibbs, C. J., JR, Yanagihara, R., Dube, D. K. & Poiesz, B. J. (1993). Sequence analysis of an immunogenic and neutralizing domain of the human T-cell lymphoma/leukemia virus type I (HTLV-I), gp46 extracellular membrane protein from a patient with both HTLV-I associated myelopathy and adult T-cell leukemia. Cancer Research 53, 6067-6073.
39. Swofford, D. L. (1991). PAUP: Phylogenetic Analysis Using Parsimony, version 3.05. Champaign: Illinois Natural History Survey.
40. Van der Maaten, M. J., Booth, A. D. & Seger, C. L. (1972). Isolation of a virus from cattle with persistent lymphocytosis. Journal of the National Cancer Institute 49, 1649-1657.
41. Zhang, H., Bagasra, O., Niikura, M., Poiesz, B. J. & Pomerantz, R. J. (1994). Intravirion reverse transcripts in the peripheral blood plasma of human immunodeficiency virus type-I infected individuals. Journal of Virology 68, 7591-7597.